Wall clock time and date at job start Wed Apr 1 2020 03:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 110.39560 * 2 1 4 4 C 1.54390 * 110.34249 * 237.76464 * 2 1 3 5 5 N 1.48151 * 104.61765 * 217.26224 * 4 2 1 6 6 C 1.34773 * 127.84138 * 219.58675 * 5 4 2 7 7 O 1.21550 * 120.00244 * 184.73172 * 6 5 4 8 8 C 1.47839 * 119.99871 * 4.72604 * 6 5 4 9 9 C 1.39965 * 120.93815 * 320.26484 * 8 6 5 10 10 N 1.32132 * 118.92028 * 180.27282 * 9 8 6 11 11 C 1.31884 * 120.96894 * 359.48167 * 10 9 8 12 12 N 1.31856 * 122.09007 * 0.53245 * 11 10 9 13 13 C 1.32157 * 120.97000 * 359.73609 * 12 11 10 14 14 C 1.50706 * 120.53572 * 180.02562 * 13 12 11 15 15 C 1.52995 * 117.49876 * 2.49969 * 14 13 12 16 16 C 1.53002 * 117.50098 * 293.87409 * 14 13 12 17 17 C 1.48149 * 104.32073 * 39.84820 * 5 4 2 18 18 C 1.54289 * 110.34175 * 122.23140 * 2 1 3 19 19 C 1.52998 * 110.34217 * 359.89285 * 18 2 1 20 20 C 1.53003 * 110.34119 * 237.74300 * 18 2 1 21 21 N 1.46495 * 109.47053 * 180.02562 * 20 18 2 22 22 C 1.36939 * 120.00353 * 179.97438 * 21 20 18 23 23 H 1.08009 * 119.99389 * 359.97438 * 22 21 20 24 24 C 1.38802 * 120.00613 * 179.97438 * 22 21 20 25 25 N 1.31627 * 119.99928 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00343 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47277 * 89.99934 * 26 24 22 28 28 H 1.48500 * 109.47110 * 210.00261 * 26 24 22 29 29 H 1.48500 * 109.47111 * 330.00002 * 26 24 22 30 30 H 1.08997 * 109.47024 * 180.77748 * 1 2 3 31 31 H 1.08997 * 109.47262 * 300.78126 * 1 2 3 32 32 H 1.09004 * 109.46947 * 60.78179 * 1 2 3 33 33 H 1.08996 * 110.40371 * 98.48358 * 4 2 1 34 34 H 1.09000 * 110.50790 * 336.09910 * 4 2 1 35 35 H 1.07996 * 120.54066 * 359.97438 * 9 8 6 36 36 H 1.08003 * 118.95907 * 180.27004 * 11 10 9 37 37 H 1.09002 * 115.54633 * 148.20535 * 14 13 12 38 38 H 1.08996 * 117.50132 * 0.02562 * 15 14 13 39 39 H 1.09005 * 117.49415 * 145.02071 * 15 14 13 40 40 H 1.08997 * 117.49913 * 214.98082 * 16 14 13 41 41 H 1.09000 * 117.49590 * 0.02562 * 16 14 13 42 42 H 1.09002 * 110.40657 * 78.93645 * 17 5 4 43 43 H 1.08999 * 110.40568 * 201.36976 * 17 5 4 44 44 H 1.09000 * 109.47531 * 60.00146 * 19 18 2 45 45 H 1.09006 * 109.47211 * 180.02562 * 19 18 2 46 46 H 1.09001 * 109.47057 * 299.99988 * 19 18 2 47 47 H 1.09006 * 109.47062 * 299.99516 * 20 18 2 48 48 H 1.08998 * 109.47390 * 59.99457 * 20 18 2 49 49 H 0.97001 * 120.00247 * 359.97438 * 21 20 18 50 50 H 0.97002 * 119.99958 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9098 1.0217 0.0000 4 6 2.0667 -0.7722 -1.2245 5 7 3.2664 -1.4818 -0.7226 6 6 4.4425 -1.6665 -1.3544 7 8 5.3077 -2.3487 -0.8410 8 6 4.6801 -1.0397 -2.6720 9 6 3.6669 -0.9847 -3.6360 10 7 3.9246 -0.4200 -4.8024 11 6 5.1110 0.0955 -5.0595 12 7 6.0933 0.0653 -4.1804 13 6 5.9245 -0.4847 -2.9907 14 6 7.0538 -0.5133 -1.9932 15 6 8.3658 0.1653 -2.3917 16 6 8.2797 -1.3613 -2.3380 17 6 2.8779 -1.9478 0.6290 18 6 2.0663 -0.7716 1.2237 19 6 0.9061 -1.3012 2.0688 20 6 2.9691 0.1307 2.0675 21 7 3.4677 -0.6201 3.2224 22 6 4.3006 -0.0147 4.1251 23 1 4.5904 1.0164 3.9852 24 6 4.7726 -0.7258 5.2196 25 7 4.4199 -1.9825 5.3898 26 14 5.9083 0.1004 6.4513 27 1 5.0992 0.7320 7.5244 28 1 6.8147 -0.9140 7.0467 29 1 6.7138 1.1401 5.7618 30 1 -0.3633 -1.0275 0.0139 31 1 -0.3633 0.5259 0.8829 32 1 -0.3633 0.5017 -0.8970 33 1 2.3401 -0.0796 -2.0205 34 1 1.3243 -1.4861 -1.5812 35 1 2.6918 -1.4015 -3.4316 36 1 5.2848 0.5532 -6.0222 37 1 6.7572 -0.4601 -0.9456 38 1 8.4120 0.6329 -3.3752 39 1 8.9326 0.6654 -1.6063 40 1 8.7899 -1.8656 -1.5174 41 1 8.2696 -1.8982 -3.2866 42 1 2.2593 -2.8426 0.5592 43 1 3.7639 -2.1433 1.2329 44 1 0.2940 -1.9721 1.4660 45 1 1.3005 -1.8429 2.9287 46 1 0.2972 -0.4658 2.4143 47 1 3.8112 0.4690 1.4636 48 1 2.3998 0.9936 2.4128 49 1 3.2078 -1.5462 3.3478 50 1 4.7500 -2.4796 6.1545 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183312164.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:23 Heat of formation + Delta-G solvation = 42.948193 kcal Electronic energy + Delta-G solvation = -31258.516159 eV Core-core repulsion = 27286.561893 eV Total energy + Delta-G solvation = -3971.954266 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.55541 -41.23302 -39.45752 -38.28627 -36.54543 -34.96382 -34.40341 -33.26594 -33.17488 -31.16599 -28.43107 -27.68697 -26.93058 -26.34879 -25.86273 -25.02360 -23.34028 -22.59724 -22.35819 -21.03650 -19.77647 -19.28980 -19.05564 -18.21563 -17.87816 -17.30312 -16.73827 -16.60013 -16.46761 -16.12636 -15.76851 -15.36854 -15.20494 -15.12150 -15.08459 -14.74805 -14.50639 -14.45874 -13.90830 -13.38990 -13.17130 -13.10767 -12.98524 -12.90384 -12.75515 -12.64653 -12.62733 -12.58324 -12.39812 -12.30689 -12.10117 -11.97938 -11.67474 -11.57992 -11.44309 -11.26530 -11.19107 -10.98347 -10.95150 -10.56432 -10.44529 -9.82764 -9.00875 -7.97588 -5.25385 -0.62653 -0.20661 1.42688 1.44754 1.47956 1.52851 1.78583 2.45560 2.52800 2.73531 2.86757 3.00853 3.19739 3.24368 3.35633 3.51938 3.59061 3.66894 3.77040 3.88234 3.95636 4.01807 4.14165 4.18053 4.25592 4.32098 4.37775 4.47681 4.58019 4.61435 4.66038 4.70579 4.79965 4.82587 4.84374 4.87727 4.98029 4.99381 5.02627 5.12119 5.15542 5.20217 5.20880 5.30227 5.40382 5.44881 5.46302 5.67324 5.70387 6.24902 6.40447 6.85248 6.93046 7.31757 8.07649 8.31685 9.25758 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.009766 B = 0.003821 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2866.313794 B = 7325.922689 C = 9436.232177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.089 4.089 3 H 0.074 0.926 4 C 0.096 3.904 5 N -0.612 5.612 6 C 0.580 3.420 7 O -0.565 6.565 8 C -0.243 4.243 9 C 0.194 3.806 10 N -0.527 5.527 11 C 0.317 3.683 12 N -0.528 5.528 13 C 0.253 3.747 14 C -0.147 4.147 15 C -0.137 4.137 16 C -0.141 4.141 17 C 0.118 3.882 18 C -0.068 4.068 19 C -0.126 4.126 20 C 0.170 3.830 21 N -0.737 5.737 22 C -0.247 4.247 23 H 0.068 0.932 24 C -0.070 4.070 25 N -0.966 5.966 26 Si 0.969 3.031 27 H -0.282 1.282 28 H -0.295 1.295 29 H -0.274 1.274 30 H 0.075 0.925 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.115 0.885 35 H 0.202 0.798 36 H 0.241 0.759 37 H 0.097 0.903 38 H 0.119 0.881 39 H 0.108 0.892 40 H 0.101 0.899 41 H 0.099 0.901 42 H 0.091 0.909 43 H 0.045 0.955 44 H 0.087 0.913 45 H 0.031 0.969 46 H 0.068 0.932 47 H -0.005 1.005 48 H 0.023 0.977 49 H 0.377 0.623 50 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.820 4.302 -23.860 25.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.109 4.109 3 H 0.093 0.907 4 C -0.025 4.025 5 N -0.343 5.343 6 C 0.368 3.632 7 O -0.444 6.444 8 C -0.250 4.250 9 C 0.027 3.973 10 N -0.241 5.241 11 C 0.031 3.969 12 N -0.241 5.241 13 C 0.108 3.892 14 C -0.166 4.166 15 C -0.174 4.174 16 C -0.179 4.179 17 C -0.005 4.005 18 C -0.069 4.069 19 C -0.184 4.184 20 C 0.043 3.957 21 N -0.381 5.381 22 C -0.379 4.379 23 H 0.086 0.914 24 C -0.263 4.263 25 N -0.616 5.616 26 Si 0.798 3.202 27 H -0.209 1.209 28 H -0.221 1.221 29 H -0.199 1.199 30 H 0.094 0.906 31 H 0.078 0.922 32 H 0.096 0.904 33 H 0.109 0.891 34 H 0.133 0.867 35 H 0.218 0.782 36 H 0.256 0.744 37 H 0.115 0.885 38 H 0.137 0.863 39 H 0.126 0.874 40 H 0.119 0.881 41 H 0.118 0.882 42 H 0.109 0.891 43 H 0.064 0.936 44 H 0.106 0.894 45 H 0.050 0.950 46 H 0.087 0.913 47 H 0.013 0.987 48 H 0.041 0.959 49 H 0.210 0.790 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -6.008 4.500 -24.495 25.620 hybrid contribution 0.821 -0.537 2.350 2.547 sum -5.187 3.963 -22.145 23.087 Atomic orbital electron populations 1.21876 0.91185 1.03442 1.02899 1.22115 0.98304 0.98721 0.91781 0.90735 1.23070 0.85862 0.96427 0.97177 1.48877 1.13003 1.54828 1.17640 1.17718 0.80670 0.80336 0.84430 1.90826 1.44664 1.40983 1.67958 1.21380 0.98197 1.07781 0.97686 1.23967 0.98371 0.88523 0.86441 1.68592 1.23463 1.11912 1.20100 1.26016 0.82846 0.89126 0.98922 1.68287 1.35312 1.18476 1.02072 1.20855 0.91334 0.86119 0.90937 1.20891 0.88284 1.11011 0.96408 1.23079 0.95319 0.94595 1.04367 1.22908 0.96974 0.94719 1.03262 1.22518 0.98630 0.97221 0.82085 1.21681 0.95264 0.94544 0.95388 1.21827 0.96329 1.01467 0.98759 1.20749 0.93727 0.93711 0.87466 1.42546 1.56940 1.12850 1.25759 1.19561 1.20398 0.95829 1.02132 0.91396 1.25492 1.03034 0.96749 1.01016 1.69805 1.50501 1.09760 1.31553 0.85206 0.78529 0.77207 0.79233 1.20909 1.22130 1.19948 0.90642 0.92187 0.90430 0.89106 0.86688 0.78163 0.74351 0.88515 0.86279 0.87388 0.88081 0.88217 0.89106 0.93602 0.89404 0.94977 0.91339 0.98741 0.95922 0.78972 0.93984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 7.93 71.98 0.57 -1.28 16 2 C -0.09 -1.81 3.31 -9.89 -0.03 -1.84 16 3 H 0.07 1.64 7.71 -2.39 -0.02 1.63 16 4 C 0.10 1.67 5.00 86.53 0.43 2.11 16 5 N -0.61 -17.11 3.31 -810.56 -2.68 -19.79 16 6 C 0.58 18.93 7.09 86.78 0.62 19.54 16 7 O -0.57 -23.79 15.53 -3.87 -0.06 -23.85 16 8 C -0.24 -6.35 5.52 -19.91 -0.11 -6.46 16 9 C 0.19 3.66 9.09 85.07 0.77 4.43 16 10 N -0.53 -9.44 10.42 -198.97 -2.07 -11.51 16 11 C 0.32 5.32 12.27 180.84 2.22 7.54 16 12 N -0.53 -11.72 9.45 -187.06 -1.77 -13.49 16 13 C 0.25 6.84 6.53 42.92 0.28 7.12 16 14 C -0.15 -4.29 4.77 -11.54 -0.06 -4.34 16 15 C -0.14 -3.10 10.04 30.59 0.31 -2.79 16 16 C -0.14 -3.54 10.24 30.60 0.31 -3.23 16 17 C 0.12 3.83 5.92 86.67 0.51 4.35 16 18 C -0.07 -1.99 0.73 -51.13 -0.04 -2.03 16 19 C -0.13 -3.43 7.11 71.98 0.51 -2.92 16 20 C 0.17 6.96 4.96 86.38 0.43 7.39 16 21 N -0.74 -38.34 4.80 -343.45 -1.65 -39.99 16 22 C -0.25 -14.35 9.99 84.03 0.84 -13.51 16 23 H 0.07 3.85 7.83 -2.91 -0.02 3.82 16 24 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 25 N -0.97 -60.43 13.06 21.65 0.28 -60.15 16 26 Si 0.97 47.69 29.55 68.60 2.03 49.71 16 27 H -0.28 -13.43 7.11 99.48 0.71 -12.73 16 28 H -0.29 -14.57 7.11 99.48 0.71 -13.87 16 29 H -0.27 -12.97 7.11 99.48 0.71 -12.26 16 30 H 0.07 0.86 6.62 -2.39 -0.02 0.85 16 31 H 0.06 0.92 6.98 -2.39 -0.02 0.90 16 32 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 33 H 0.09 1.34 5.86 -2.39 -0.01 1.33 16 34 H 0.12 1.25 7.86 -2.39 -0.02 1.23 16 35 H 0.20 2.51 6.40 -2.91 -0.02 2.49 16 36 H 0.24 1.87 8.06 -2.91 -0.02 1.85 16 37 H 0.10 3.49 7.11 -2.39 -0.02 3.47 16 38 H 0.12 2.43 7.58 -2.39 -0.02 2.42 16 39 H 0.11 2.25 8.14 -2.38 -0.02 2.23 16 40 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 41 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 42 H 0.09 2.54 7.84 -2.39 -0.02 2.52 16 43 H 0.05 2.02 7.00 -2.39 -0.02 2.00 16 44 H 0.09 1.74 6.68 -2.39 -0.02 1.72 16 45 H 0.03 1.11 6.74 -2.38 -0.02 1.10 16 46 H 0.07 1.74 6.89 -2.39 -0.02 1.73 16 47 H -0.01 -0.24 8.14 -2.38 -0.02 -0.26 16 48 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 49 H 0.38 20.60 5.99 -92.71 -0.56 20.04 16 50 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -78.09 393.76 2.52 -75.57 By element: Atomic # 1 Polarization: 32.73 SS G_CDS: 0.41 Total: 33.14 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: 8.04 Total: 10.37 kcal Atomic # 7 Polarization: -137.05 SS G_CDS: -7.89 Total: -144.94 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: -0.06 Total: -23.85 kcal Atomic # 14 Polarization: 47.69 SS G_CDS: 2.03 Total: 49.71 kcal Total: -78.09 2.52 -75.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183312164.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.519 kcal (2) G-P(sol) polarization free energy of solvation -78.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds