Wall clock time and date at job start Wed Apr 1 2020 03:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.49587 * 2 1 4 4 C 1.53191 * 109.49877 * 120.06421 * 2 1 3 5 5 N 1.46927 * 108.77361 * 65.31818 * 4 2 1 6 6 C 1.34777 * 120.62755 * 233.58441 * 5 4 2 7 7 O 1.21554 * 119.99520 * 174.20799 * 6 5 4 8 8 C 1.47825 * 120.00196 * 354.20161 * 6 5 4 9 9 C 1.39947 * 120.94075 * 320.00368 * 8 6 5 10 10 N 1.32155 * 118.92102 * 179.73890 * 9 8 6 11 11 C 1.31860 * 120.97097 * 0.51654 * 10 9 8 12 12 C 1.50701 * 118.95831 * 179.72482 * 11 10 9 13 13 C 1.53007 * 117.49107 * 8.77566 * 12 11 10 14 14 C 1.52998 * 117.49694 * 300.12040 * 12 11 10 15 15 N 1.31876 * 122.09476 * 359.75811 * 11 10 9 16 16 C 1.32151 * 120.96439 * 359.96949 * 15 11 10 17 17 C 1.46923 * 118.73972 * 53.60585 * 5 4 2 18 18 C 1.53193 * 108.77630 * 306.39258 * 17 5 4 19 19 C 1.53034 * 109.31423 * 54.63531 * 18 17 5 20 20 H 1.08999 * 109.46356 * 58.65446 * 19 18 17 21 21 C 1.53000 * 109.44894 * 178.62456 * 19 18 17 22 22 N 1.46504 * 109.46830 * 295.05870 * 21 19 18 23 23 C 1.36933 * 119.99573 * 180.02562 * 22 21 19 24 24 H 1.08003 * 120.00563 * 0.02562 * 23 22 21 25 25 C 1.38816 * 119.99937 * 180.02562 * 23 22 21 26 26 N 1.31615 * 120.00302 * 179.97438 * 25 23 22 27 27 Si 1.86805 * 119.99580 * 359.97438 * 25 23 22 28 28 H 1.48503 * 109.47040 * 90.00469 * 27 25 23 29 29 H 1.48506 * 109.46848 * 209.99906 * 27 25 23 30 30 H 1.48493 * 109.47446 * 330.00259 * 27 25 23 31 31 H 1.09007 * 109.46916 * 299.93171 * 1 2 3 32 32 H 1.08990 * 109.47609 * 59.93312 * 1 2 3 33 33 H 1.09000 * 109.46622 * 179.97438 * 1 2 3 34 34 H 1.08993 * 109.58865 * 305.53059 * 4 2 1 35 35 H 1.09003 * 109.58509 * 185.10017 * 4 2 1 36 36 H 1.07994 * 120.53840 * 359.96870 * 9 8 6 37 37 H 1.08994 * 115.55410 * 154.44039 * 12 11 10 38 38 H 1.08995 * 117.49947 * 359.97438 * 13 12 11 39 39 H 1.09004 * 117.49587 * 145.02291 * 13 12 11 40 40 H 1.09004 * 117.49401 * 214.97069 * 14 12 11 41 41 H 1.09000 * 117.50088 * 359.97438 * 14 12 11 42 42 H 1.08003 * 120.53347 * 179.97438 * 16 15 11 43 43 H 1.08998 * 109.58594 * 66.17988 * 17 5 4 44 44 H 1.09003 * 109.58606 * 186.60487 * 17 5 4 45 45 H 1.09002 * 109.49881 * 174.59085 * 18 17 5 46 46 H 1.09005 * 109.49576 * 294.67823 * 18 17 5 47 47 H 1.08999 * 109.47283 * 55.06193 * 21 19 18 48 48 H 1.09001 * 109.46937 * 175.06417 * 21 19 18 49 49 H 0.96994 * 120.00075 * 359.97438 * 22 21 19 50 50 H 0.96999 * 120.00121 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0414 -0.7234 1.2498 5 7 1.6516 -2.1378 1.1701 6 6 0.9749 -2.7214 2.1790 7 8 0.5664 -3.8599 2.0583 8 6 0.7296 -1.9771 3.4325 9 6 1.7181 -1.1564 3.9871 10 7 1.4541 -0.5051 5.1064 11 6 0.2850 -0.6283 5.7035 12 6 0.0347 0.1305 6.9813 13 6 1.0808 1.1632 7.4059 14 6 0.9572 -0.1592 8.1671 15 7 -0.6722 -1.3949 5.2185 16 6 -0.4958 -2.0778 4.1010 17 6 2.0140 -2.9040 -0.0300 18 6 1.5030 -2.1560 -1.2654 19 6 2.0408 -0.7234 -1.2482 20 1 3.1305 -0.7446 -1.2352 21 6 1.5602 0.0162 -2.4984 22 7 2.1463 -0.6051 -3.6888 23 6 1.8578 -0.1093 -4.9321 24 1 1.1986 0.7400 -5.0353 25 6 2.4126 -0.6982 -6.0601 26 7 2.1350 -0.2220 -7.2552 27 14 3.5534 -2.1667 -5.8816 28 1 2.7574 -3.4197 -5.9235 29 1 4.5369 -2.1676 -6.9943 30 1 4.2725 -2.0802 -4.5853 31 1 -0.3633 0.5128 0.8907 32 1 -0.3634 0.5148 -0.8893 33 1 -0.3632 -1.0277 -0.0005 34 1 1.6008 -0.2725 2.1389 35 1 3.1276 -0.6459 1.2981 36 1 2.6797 -1.0539 3.5064 37 1 -1.0097 0.3534 7.1989 38 1 1.9501 1.2934 6.7614 39 1 0.7245 2.0653 7.9034 40 1 0.5196 -0.1264 9.1649 41 1 1.7448 -0.8988 8.0231 42 1 -1.2843 -2.7039 3.7102 43 1 3.0980 -3.0042 -0.0860 44 1 1.5554 -3.8918 0.0148 45 1 1.8480 -2.6634 -2.1664 46 1 0.4132 -2.1358 -1.2535 47 1 0.4733 -0.0386 -2.5577 48 1 1.8690 1.0601 -2.4441 49 1 2.7392 -1.3671 -3.5960 50 1 2.5224 -0.6338 -8.0434 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185246756.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:25 Heat of formation + Delta-G solvation = 59.341941 kcal Electronic energy + Delta-G solvation = -30303.263596 eV Core-core repulsion = 26332.020216 eV Total energy + Delta-G solvation = -3971.243380 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.89059 -40.39784 -38.36768 -37.43324 -35.34798 -34.30532 -33.37941 -32.82411 -31.68516 -30.71553 -27.57867 -27.12212 -26.10128 -25.14161 -23.67886 -23.11880 -22.81073 -21.95939 -21.41701 -20.53736 -18.86266 -18.51175 -17.80247 -17.39776 -17.05448 -16.43192 -15.77638 -15.69579 -15.12797 -15.02439 -14.68424 -14.45059 -14.37726 -14.22754 -14.01083 -13.88082 -13.60967 -12.95670 -12.90396 -12.72437 -12.43790 -12.41229 -12.10184 -11.92188 -11.88030 -11.64349 -11.42479 -11.35452 -11.30011 -11.15235 -10.96660 -10.87118 -10.54355 -10.41065 -10.28357 -10.14342 -10.08096 -9.76849 -9.68217 -9.60291 -8.91333 -8.84791 -7.24832 -5.78931 -3.14373 0.02608 0.55722 2.30719 2.60468 3.03078 3.22303 3.34080 3.36451 3.42931 3.46971 3.68267 3.95695 4.04654 4.36140 4.43066 4.47768 4.51073 4.53173 4.56451 4.67730 4.77794 4.86092 5.00569 5.07322 5.15426 5.19040 5.24454 5.34830 5.35544 5.42130 5.50359 5.52098 5.59529 5.61676 5.66272 5.73403 5.76383 5.79560 5.87404 6.04542 6.05079 6.11432 6.20214 6.31998 6.38779 6.46944 6.63144 6.76569 7.05063 7.54082 7.76996 7.97272 8.40038 9.19178 9.91454 10.11134 11.39543 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.023656 B = 0.002248 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.371478 B =12454.025183 C =12941.857993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.097 4.097 3 H 0.087 0.913 4 C 0.102 3.898 5 N -0.596 5.596 6 C 0.570 3.430 7 O -0.531 6.531 8 C -0.241 4.241 9 C 0.186 3.814 10 N -0.517 5.517 11 C 0.365 3.635 12 C -0.109 4.109 13 C -0.151 4.151 14 C -0.153 4.153 15 N -0.514 5.514 16 C 0.207 3.793 17 C 0.111 3.889 18 C -0.129 4.129 19 C -0.093 4.093 20 H 0.073 0.927 21 C 0.163 3.837 22 N -0.755 5.755 23 C -0.244 4.244 24 H 0.089 0.911 25 C 0.003 3.997 26 N -0.934 5.934 27 Si 0.884 3.116 28 H -0.284 1.284 29 H -0.291 1.291 30 H -0.278 1.278 31 H 0.045 0.955 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.177 0.823 37 H 0.132 0.868 38 H 0.112 0.888 39 H 0.102 0.898 40 H 0.105 0.895 41 H 0.097 0.903 42 H 0.179 0.821 43 H 0.071 0.929 44 H 0.094 0.906 45 H 0.082 0.918 46 H 0.073 0.927 47 H 0.030 0.970 48 H 0.026 0.974 49 H 0.360 0.640 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.261 0.184 30.903 30.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.117 4.117 3 H 0.105 0.895 4 C -0.021 4.021 5 N -0.329 5.329 6 C 0.356 3.644 7 O -0.408 6.408 8 C -0.249 4.249 9 C 0.019 3.981 10 N -0.231 5.231 11 C 0.100 3.900 12 C -0.129 4.129 13 C -0.189 4.189 14 C -0.192 4.192 15 N -0.227 5.227 16 C 0.040 3.960 17 C -0.010 4.010 18 C -0.167 4.167 19 C -0.112 4.112 20 H 0.091 0.909 21 C 0.036 3.964 22 N -0.401 5.401 23 C -0.373 4.373 24 H 0.107 0.893 25 C -0.192 4.192 26 N -0.582 5.582 27 Si 0.714 3.286 28 H -0.210 1.210 29 H -0.217 1.217 30 H -0.204 1.204 31 H 0.064 0.936 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.194 0.806 37 H 0.150 0.850 38 H 0.130 0.870 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.115 0.885 42 H 0.196 0.804 43 H 0.089 0.911 44 H 0.112 0.888 45 H 0.100 0.900 46 H 0.092 0.908 47 H 0.048 0.952 48 H 0.044 0.956 49 H 0.193 0.807 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.753 0.218 31.476 31.525 hybrid contribution 0.998 -1.483 -1.055 2.076 sum -0.755 -1.266 30.421 30.457 Atomic orbital electron populations 1.21902 0.94697 1.02221 1.01774 1.21457 0.96808 0.99604 0.93811 0.89525 1.22182 1.00150 0.80351 0.99416 1.47991 1.55345 1.11556 1.17972 1.17793 0.78128 0.85901 0.82531 1.90813 1.50577 1.18049 1.81335 1.21738 0.99042 1.03993 1.00111 1.23596 0.98566 0.86589 0.89376 1.68180 1.21963 1.23365 1.09581 1.22385 0.84356 0.89405 0.93858 1.20716 0.98656 1.03217 0.90295 1.23072 1.00390 0.92837 1.02563 1.23018 1.00971 1.00163 0.95013 1.68268 1.33389 1.08486 1.12544 1.23422 0.94580 0.90573 0.87375 1.21784 1.00130 0.96061 0.83071 1.21997 1.01946 0.95737 0.97045 1.21374 1.00316 0.94806 0.94722 0.90910 1.20686 0.96337 0.94803 0.84589 1.42722 1.57298 1.37481 1.02590 1.19049 1.24165 1.12255 0.81873 0.89305 1.24683 1.00278 0.99146 0.95131 1.69698 1.48344 1.43123 0.97036 0.86558 0.81252 0.83855 0.76909 1.21027 1.21743 1.20381 0.93609 0.91361 0.92321 0.89962 0.90525 0.80643 0.85008 0.87008 0.87914 0.87690 0.88482 0.80422 0.91074 0.88789 0.89951 0.90833 0.95233 0.95642 0.80710 0.93063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 8.38 37.16 0.31 -1.33 16 2 C -0.10 -1.02 2.72 -90.50 -0.25 -1.26 16 3 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 4 C 0.10 0.87 4.33 -3.71 -0.02 0.86 16 5 N -0.60 -6.22 2.41 -173.89 -0.42 -6.64 16 6 C 0.57 6.63 7.37 -12.34 -0.09 6.54 16 7 O -0.53 -7.92 16.37 5.32 0.09 -7.83 16 8 C -0.24 -2.39 5.14 -104.70 -0.54 -2.93 16 9 C 0.19 1.59 8.69 -16.77 -0.15 1.45 16 10 N -0.52 -4.81 9.32 -10.39 -0.10 -4.91 16 11 C 0.37 3.51 7.31 -157.07 -1.15 2.36 16 12 C -0.11 -0.78 6.23 -91.77 -0.57 -1.35 16 13 C -0.15 -0.86 10.01 -26.69 -0.27 -1.12 16 14 C -0.15 -0.87 10.24 -26.69 -0.27 -1.14 16 15 N -0.51 -5.36 10.32 -10.39 -0.11 -5.47 16 16 C 0.21 2.08 10.97 -16.77 -0.18 1.89 16 17 C 0.11 1.27 6.44 -3.71 -0.02 1.25 16 18 C -0.13 -1.72 4.90 -26.61 -0.13 -1.85 16 19 C -0.09 -1.24 1.96 -90.58 -0.18 -1.42 16 20 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 21 C 0.16 2.92 5.19 -4.04 -0.02 2.90 16 22 N -0.76 -17.22 5.12 -59.90 -0.31 -17.53 16 23 C -0.24 -6.79 10.47 -15.06 -0.16 -6.95 16 24 H 0.09 2.67 8.06 -52.48 -0.42 2.24 16 25 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 26 N -0.93 -29.20 13.97 55.49 0.78 -28.42 16 27 Si 0.88 21.77 27.74 -169.99 -4.71 17.06 16 28 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 29 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 30 H -0.28 -6.35 6.52 56.52 0.37 -5.98 16 31 H 0.04 0.45 8.14 -51.92 -0.42 0.03 16 32 H 0.07 0.83 6.59 -51.93 -0.34 0.49 16 33 H 0.06 0.71 5.97 -51.93 -0.31 0.40 16 34 H 0.08 0.63 4.73 -51.93 -0.25 0.39 16 35 H 0.08 0.54 8.13 -51.93 -0.42 0.12 16 36 H 0.18 1.11 6.65 -52.49 -0.35 0.76 16 37 H 0.13 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.11 0.73 7.53 -51.93 -0.39 0.34 16 39 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.18 1.55 8.06 -52.48 -0.42 1.13 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.09 1.17 7.00 -51.93 -0.36 0.80 16 45 H 0.08 1.23 7.15 -51.93 -0.37 0.86 16 46 H 0.07 1.03 6.33 -51.93 -0.33 0.70 16 47 H 0.03 0.55 6.74 -51.93 -0.35 0.20 16 48 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.36 7.96 4.71 -40.82 -0.19 7.77 16 50 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 LS Contribution 391.06 15.07 5.89 5.89 Total: -1.00 -33.68 391.06 -10.15 -43.83 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -7.48 Total: 6.13 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -3.78 Total: -2.11 kcal Atomic # 7 Polarization: -62.81 SS G_CDS: -0.15 Total: -62.96 kcal Atomic # 8 Polarization: -7.92 SS G_CDS: 0.09 Total: -7.83 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.71 Total: 17.06 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.68 -10.15 -43.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185246756.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.174 kcal (2) G-P(sol) polarization free energy of solvation -33.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds