Wall clock time and date at job start Wed Apr 1 2020 03:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.49587 * 2 1 4 4 C 1.53191 * 109.49877 * 120.06421 * 2 1 3 5 5 N 1.46927 * 108.77361 * 65.31818 * 4 2 1 6 6 C 1.34777 * 120.62755 * 233.58441 * 5 4 2 7 7 O 1.21554 * 119.99520 * 174.20799 * 6 5 4 8 8 C 1.47825 * 120.00196 * 354.20161 * 6 5 4 9 9 C 1.39947 * 120.94075 * 320.00368 * 8 6 5 10 10 N 1.32155 * 118.92102 * 179.73890 * 9 8 6 11 11 C 1.31860 * 120.97097 * 0.51654 * 10 9 8 12 12 C 1.50701 * 118.95831 * 179.72482 * 11 10 9 13 13 C 1.53007 * 117.49107 * 8.77566 * 12 11 10 14 14 C 1.52998 * 117.49694 * 300.12040 * 12 11 10 15 15 N 1.31876 * 122.09476 * 359.75811 * 11 10 9 16 16 C 1.32151 * 120.96439 * 359.96949 * 15 11 10 17 17 C 1.46923 * 118.73972 * 53.60585 * 5 4 2 18 18 C 1.53193 * 108.77630 * 306.39258 * 17 5 4 19 19 C 1.53034 * 109.31423 * 54.63531 * 18 17 5 20 20 H 1.08999 * 109.46356 * 58.65446 * 19 18 17 21 21 C 1.53000 * 109.44894 * 178.62456 * 19 18 17 22 22 N 1.46504 * 109.46830 * 295.05870 * 21 19 18 23 23 C 1.36933 * 119.99573 * 180.02562 * 22 21 19 24 24 H 1.08003 * 120.00563 * 0.02562 * 23 22 21 25 25 C 1.38816 * 119.99937 * 180.02562 * 23 22 21 26 26 N 1.31615 * 120.00302 * 179.97438 * 25 23 22 27 27 Si 1.86805 * 119.99580 * 359.97438 * 25 23 22 28 28 H 1.48503 * 109.47040 * 90.00469 * 27 25 23 29 29 H 1.48506 * 109.46848 * 209.99906 * 27 25 23 30 30 H 1.48493 * 109.47446 * 330.00259 * 27 25 23 31 31 H 1.09007 * 109.46916 * 299.93171 * 1 2 3 32 32 H 1.08990 * 109.47609 * 59.93312 * 1 2 3 33 33 H 1.09000 * 109.46622 * 179.97438 * 1 2 3 34 34 H 1.08993 * 109.58865 * 305.53059 * 4 2 1 35 35 H 1.09003 * 109.58509 * 185.10017 * 4 2 1 36 36 H 1.07994 * 120.53840 * 359.96870 * 9 8 6 37 37 H 1.08994 * 115.55410 * 154.44039 * 12 11 10 38 38 H 1.08995 * 117.49947 * 359.97438 * 13 12 11 39 39 H 1.09004 * 117.49587 * 145.02291 * 13 12 11 40 40 H 1.09004 * 117.49401 * 214.97069 * 14 12 11 41 41 H 1.09000 * 117.50088 * 359.97438 * 14 12 11 42 42 H 1.08003 * 120.53347 * 179.97438 * 16 15 11 43 43 H 1.08998 * 109.58594 * 66.17988 * 17 5 4 44 44 H 1.09003 * 109.58606 * 186.60487 * 17 5 4 45 45 H 1.09002 * 109.49881 * 174.59085 * 18 17 5 46 46 H 1.09005 * 109.49576 * 294.67823 * 18 17 5 47 47 H 1.08999 * 109.47283 * 55.06193 * 21 19 18 48 48 H 1.09001 * 109.46937 * 175.06417 * 21 19 18 49 49 H 0.96994 * 120.00075 * 359.97438 * 22 21 19 50 50 H 0.96999 * 120.00121 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0414 -0.7234 1.2498 5 7 1.6516 -2.1378 1.1701 6 6 0.9749 -2.7214 2.1790 7 8 0.5664 -3.8599 2.0583 8 6 0.7296 -1.9771 3.4325 9 6 1.7181 -1.1564 3.9871 10 7 1.4541 -0.5051 5.1064 11 6 0.2850 -0.6283 5.7035 12 6 0.0347 0.1305 6.9813 13 6 1.0808 1.1632 7.4059 14 6 0.9572 -0.1592 8.1671 15 7 -0.6722 -1.3949 5.2185 16 6 -0.4958 -2.0778 4.1010 17 6 2.0140 -2.9040 -0.0300 18 6 1.5030 -2.1560 -1.2654 19 6 2.0408 -0.7234 -1.2482 20 1 3.1305 -0.7446 -1.2352 21 6 1.5602 0.0162 -2.4984 22 7 2.1463 -0.6051 -3.6888 23 6 1.8578 -0.1093 -4.9321 24 1 1.1986 0.7400 -5.0353 25 6 2.4126 -0.6982 -6.0601 26 7 2.1350 -0.2220 -7.2552 27 14 3.5534 -2.1667 -5.8816 28 1 2.7574 -3.4197 -5.9235 29 1 4.5369 -2.1676 -6.9943 30 1 4.2725 -2.0802 -4.5853 31 1 -0.3633 0.5128 0.8907 32 1 -0.3634 0.5148 -0.8893 33 1 -0.3632 -1.0277 -0.0005 34 1 1.6008 -0.2725 2.1389 35 1 3.1276 -0.6459 1.2981 36 1 2.6797 -1.0539 3.5064 37 1 -1.0097 0.3534 7.1989 38 1 1.9501 1.2934 6.7614 39 1 0.7245 2.0653 7.9034 40 1 0.5196 -0.1264 9.1649 41 1 1.7448 -0.8988 8.0231 42 1 -1.2843 -2.7039 3.7102 43 1 3.0980 -3.0042 -0.0860 44 1 1.5554 -3.8918 0.0148 45 1 1.8480 -2.6634 -2.1664 46 1 0.4132 -2.1358 -1.2535 47 1 0.4733 -0.0386 -2.5577 48 1 1.8690 1.0601 -2.4441 49 1 2.7392 -1.3671 -3.5960 50 1 2.5224 -0.6338 -8.0434 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185246756.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:23 Heat of formation + Delta-G solvation = 38.716075 kcal Electronic energy + Delta-G solvation = -30304.158000 eV Core-core repulsion = 26332.020216 eV Total energy + Delta-G solvation = -3972.137784 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.62320 -41.26449 -39.38142 -37.95528 -36.80253 -35.18546 -34.66338 -33.62452 -33.22953 -32.03381 -28.91941 -27.96662 -26.95440 -25.86673 -25.17424 -24.16563 -23.23340 -23.02933 -22.45304 -21.46148 -20.10364 -19.45998 -19.14842 -18.17526 -17.93589 -17.31551 -16.76769 -16.61285 -16.26075 -15.97488 -15.76052 -15.56324 -15.27185 -15.21708 -15.11034 -14.79508 -14.73377 -14.62505 -13.99873 -13.78028 -13.58015 -13.34818 -13.26451 -12.89848 -12.81245 -12.77053 -12.49676 -12.34386 -12.20505 -12.08025 -12.04658 -11.92975 -11.84322 -11.59364 -11.44891 -11.38796 -11.27983 -11.02261 -10.93533 -10.48442 -10.36735 -9.73163 -9.27208 -8.02488 -5.35473 -0.69035 -0.13935 1.36970 1.41631 1.45238 1.48792 1.78207 2.39027 2.48597 2.61606 2.84494 3.12143 3.21772 3.29025 3.33821 3.52483 3.68546 3.73950 3.82532 3.87578 3.93323 3.98009 4.06668 4.08986 4.23753 4.31086 4.35741 4.40815 4.54421 4.59802 4.61532 4.71244 4.74088 4.80548 4.84746 4.92987 4.96425 5.02022 5.08879 5.12575 5.15376 5.18468 5.22293 5.25119 5.33045 5.46230 5.55729 5.69267 5.76287 6.20693 6.21617 6.84425 6.90075 7.09120 7.85694 8.05020 9.19178 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.023656 B = 0.002248 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.371478 B =12454.025183 C =12941.857993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 H 0.103 0.897 4 C 0.104 3.896 5 N -0.592 5.592 6 C 0.574 3.426 7 O -0.570 6.570 8 C -0.248 4.248 9 C 0.194 3.806 10 N -0.521 5.521 11 C 0.358 3.642 12 C -0.128 4.128 13 C -0.141 4.141 14 C -0.146 4.146 15 N -0.531 5.531 16 C 0.200 3.800 17 C 0.118 3.882 18 C -0.126 4.126 19 C -0.082 4.082 20 H 0.085 0.915 21 C 0.160 3.840 22 N -0.756 5.756 23 C -0.233 4.233 24 H 0.052 0.948 25 C -0.068 4.068 26 N -0.985 5.985 27 Si 0.955 3.045 28 H -0.280 1.280 29 H -0.297 1.297 30 H -0.245 1.245 31 H 0.059 0.941 32 H 0.050 0.950 33 H 0.044 0.956 34 H 0.096 0.904 35 H 0.108 0.892 36 H 0.204 0.796 37 H 0.138 0.862 38 H 0.104 0.896 39 H 0.121 0.879 40 H 0.124 0.876 41 H 0.088 0.912 42 H 0.181 0.819 43 H 0.093 0.907 44 H 0.081 0.919 45 H 0.066 0.934 46 H 0.058 0.942 47 H 0.019 0.981 48 H 0.024 0.976 49 H 0.367 0.633 50 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.713 0.239 34.018 34.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 H 0.121 0.879 4 C -0.018 4.018 5 N -0.323 5.323 6 C 0.361 3.639 7 O -0.450 6.450 8 C -0.256 4.256 9 C 0.027 3.973 10 N -0.235 5.235 11 C 0.093 3.907 12 C -0.148 4.148 13 C -0.178 4.178 14 C -0.184 4.184 15 N -0.244 5.244 16 C 0.034 3.966 17 C -0.004 4.004 18 C -0.164 4.164 19 C -0.101 4.101 20 H 0.104 0.896 21 C 0.034 3.966 22 N -0.402 5.402 23 C -0.364 4.364 24 H 0.071 0.929 25 C -0.259 4.259 26 N -0.636 5.636 27 Si 0.782 3.218 28 H -0.206 1.206 29 H -0.224 1.224 30 H -0.169 1.169 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.114 0.886 35 H 0.126 0.874 36 H 0.220 0.780 37 H 0.156 0.844 38 H 0.122 0.878 39 H 0.140 0.860 40 H 0.142 0.858 41 H 0.106 0.894 42 H 0.198 0.802 43 H 0.111 0.889 44 H 0.099 0.901 45 H 0.084 0.916 46 H 0.077 0.923 47 H 0.037 0.963 48 H 0.042 0.958 49 H 0.200 0.800 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.222 0.301 34.655 34.657 hybrid contribution 0.263 -1.386 -1.996 2.444 sum 0.486 -1.085 32.659 32.681 Atomic orbital electron populations 1.21854 0.95515 1.01282 1.01646 1.21443 0.96034 1.00430 0.93223 0.87883 1.22352 1.02040 0.78725 0.98650 1.48012 1.54732 1.12263 1.17252 1.17972 0.77407 0.85417 0.83076 1.90796 1.52212 1.19870 1.82157 1.21573 0.99536 1.04815 0.99667 1.24001 0.98994 0.85366 0.88906 1.68289 1.21763 1.23634 1.09808 1.22892 0.84281 0.89037 0.94448 1.20884 0.99527 1.04339 0.90030 1.23130 0.99304 0.93374 1.02022 1.23090 1.00079 0.99923 0.95328 1.68319 1.34055 1.09197 1.12852 1.23558 0.95048 0.90572 0.87443 1.21665 1.01119 0.95204 0.82417 1.21911 1.01096 0.95903 0.97478 1.21274 1.00911 0.94333 0.93560 0.89649 1.20856 0.95579 0.95132 0.85042 1.42712 1.57526 1.37732 1.02200 1.19025 1.22501 1.10744 0.84163 0.92950 1.25559 1.02817 1.02870 0.94649 1.69893 1.50385 1.45303 0.98036 0.85403 0.78870 0.79472 0.78030 1.20585 1.22421 1.16901 0.92160 0.93068 0.93667 0.88594 0.87412 0.77988 0.84446 0.87787 0.86034 0.85818 0.89381 0.80167 0.88908 0.90066 0.91579 0.92295 0.96286 0.95768 0.79959 0.93415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 8.38 71.98 0.60 -2.43 16 2 C -0.09 -1.65 2.72 -10.71 -0.03 -1.68 16 3 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 4 C 0.10 1.37 4.33 86.36 0.37 1.75 16 5 N -0.59 -10.82 2.41 -822.34 -1.98 -12.80 16 6 C 0.57 12.48 7.37 86.78 0.64 13.12 16 7 O -0.57 -16.82 16.37 -3.89 -0.06 -16.88 16 8 C -0.25 -4.49 5.14 -19.91 -0.10 -4.59 16 9 C 0.19 2.78 8.69 85.06 0.74 3.52 16 10 N -0.52 -8.48 9.32 -186.80 -1.74 -10.22 16 11 C 0.36 6.33 7.31 138.71 1.01 7.35 16 12 C -0.13 -1.61 6.23 -11.54 -0.07 -1.68 16 13 C -0.14 -1.25 10.01 30.62 0.31 -0.95 16 14 C -0.15 -1.34 10.24 30.62 0.31 -1.03 16 15 N -0.53 -10.60 10.32 -186.79 -1.93 -12.53 16 16 C 0.20 3.87 10.97 85.06 0.93 4.80 16 17 C 0.12 2.44 6.44 86.36 0.56 2.99 16 18 C -0.13 -3.16 4.90 30.67 0.15 -3.01 16 19 C -0.08 -2.00 1.96 -10.77 -0.02 -2.02 16 20 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 21 C 0.16 5.62 5.19 86.38 0.45 6.07 16 22 N -0.76 -33.92 5.12 -343.44 -1.76 -35.68 16 23 C -0.23 -13.23 10.47 84.04 0.88 -12.35 16 24 H 0.05 3.29 8.06 -2.91 -0.02 3.26 16 25 C -0.07 -3.98 5.50 84.86 0.47 -3.52 16 26 N -0.99 -63.36 13.97 21.65 0.30 -63.05 16 27 Si 0.96 44.74 27.74 68.60 1.90 46.64 16 28 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 29 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 30 H -0.24 -10.03 6.52 99.48 0.65 -9.38 16 31 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 32 H 0.05 1.23 6.59 -2.39 -0.02 1.21 16 33 H 0.04 1.06 5.97 -2.39 -0.01 1.05 16 34 H 0.10 1.08 4.73 -2.39 -0.01 1.07 16 35 H 0.11 0.89 8.13 -2.39 -0.02 0.87 16 36 H 0.20 1.67 6.65 -2.91 -0.02 1.66 16 37 H 0.14 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.10 1.12 7.53 -2.39 -0.02 1.10 16 39 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.12 0.66 8.14 -2.38 -0.02 0.64 16 41 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.18 3.19 8.06 -2.91 -0.02 3.17 16 43 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.08 1.94 7.00 -2.39 -0.02 1.92 16 45 H 0.07 1.89 7.15 -2.39 -0.02 1.87 16 46 H 0.06 1.65 6.33 -2.38 -0.02 1.63 16 47 H 0.02 0.72 6.74 -2.39 -0.02 0.70 16 48 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 49 H 0.37 15.46 4.71 -92.71 -0.44 15.02 16 50 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 Total: -1.00 -75.43 391.06 2.40 -73.02 By element: Atomic # 1 Polarization: 24.69 SS G_CDS: 0.47 Total: 25.16 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: 7.20 Total: 6.34 kcal Atomic # 7 Polarization: -127.18 SS G_CDS: -7.11 Total: -134.29 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: -0.06 Total: -16.88 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.90 Total: 46.64 kcal Total: -75.43 2.40 -73.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185246756.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.739 kcal (2) G-P(sol) polarization free energy of solvation -75.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds