Wall clock time and date at job start Wed Apr 1 2020 03:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.52241 * 2 1 4 4 C 1.52765 * 109.56408 * 240.04226 * 2 1 3 5 5 N 1.46918 * 109.00613 * 185.55512 * 4 2 1 6 6 C 1.34781 * 120.62792 * 233.58459 * 5 4 2 7 7 O 1.21549 * 119.99918 * 5.54325 * 6 5 4 8 8 C 1.47832 * 119.99821 * 185.26926 * 6 5 4 9 9 C 1.39945 * 120.93916 * 220.27818 * 8 6 5 10 10 N 1.32149 * 118.92653 * 179.76734 * 9 8 6 11 11 C 1.31869 * 120.96280 * 0.51904 * 10 9 8 12 12 C 1.50697 * 118.95074 * 179.75260 * 11 10 9 13 13 C 1.52999 * 117.50119 * 8.59652 * 12 11 10 14 14 C 1.52992 * 60.00205 * 252.51195 * 13 12 11 15 15 N 1.31868 * 122.09997 * 359.72616 * 11 10 9 16 16 C 1.32153 * 120.96371 * 0.02562 * 15 11 10 17 17 C 1.46928 * 118.74266 * 53.31365 * 5 4 2 18 18 C 1.53197 * 108.77221 * 306.63922 * 17 5 4 19 19 C 1.53042 * 109.31165 * 54.63551 * 18 17 5 20 20 H 1.08997 * 109.46067 * 58.63881 * 19 18 17 21 21 C 1.52997 * 109.46122 * 178.61147 * 19 18 17 22 22 N 1.46499 * 109.47263 * 295.00161 * 21 19 18 23 23 C 1.36938 * 120.00077 * 179.97438 * 22 21 19 24 24 H 1.08003 * 120.00071 * 0.02562 * 23 22 21 25 25 C 1.38813 * 120.00014 * 179.97438 * 23 22 21 26 26 N 1.31621 * 119.99726 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 119.99833 * 180.02562 * 25 23 22 28 28 H 1.48496 * 109.47348 * 0.02562 * 27 25 23 29 29 H 1.48498 * 109.46832 * 120.00305 * 27 25 23 30 30 H 1.48505 * 109.46968 * 240.00242 * 27 25 23 31 31 H 1.09011 * 109.47406 * 299.92500 * 1 2 3 32 32 H 1.09000 * 109.47198 * 59.91730 * 1 2 3 33 33 H 1.08996 * 109.47533 * 179.97438 * 1 2 3 34 34 H 1.09006 * 109.50458 * 65.67258 * 4 2 1 35 35 H 1.08995 * 109.42966 * 305.39478 * 4 2 1 36 36 H 1.08000 * 120.53633 * 0.02562 * 9 8 6 37 37 H 1.08997 * 115.55402 * 154.31015 * 12 11 10 38 38 H 1.09001 * 117.49946 * 0.02562 * 13 12 11 39 39 H 1.08998 * 117.50190 * 145.01851 * 13 12 11 40 40 H 1.09003 * 117.50057 * 252.51071 * 14 13 12 41 41 H 1.09004 * 117.50205 * 107.49067 * 14 13 12 42 42 H 1.08001 * 120.53619 * 180.02562 * 16 15 11 43 43 H 1.08998 * 109.58689 * 66.42509 * 17 5 4 44 44 H 1.08991 * 109.58921 * 186.71470 * 17 5 4 45 45 H 1.08994 * 109.49609 * 174.58102 * 18 17 5 46 46 H 1.08994 * 109.49870 * 294.68597 * 18 17 5 47 47 H 1.09010 * 109.46811 * 55.00298 * 21 19 18 48 48 H 1.08995 * 109.47414 * 174.99525 * 21 19 18 49 49 H 0.96995 * 119.99474 * 359.97438 * 22 21 19 50 50 H 0.97002 * 119.99639 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0415 -0.7188 -1.2471 5 7 3.5045 -0.8293 -1.1695 6 6 4.2811 -0.3858 -2.1779 7 8 3.7808 0.2015 -3.1172 8 6 5.7420 -0.6082 -2.1385 9 6 6.6329 0.3872 -2.5555 10 7 7.9313 0.1475 -2.4991 11 6 8.3890 -1.0117 -2.0681 12 6 9.8783 -1.2384 -2.0280 13 6 10.7837 -0.0358 -2.3013 14 6 10.6435 -1.1415 -3.3493 15 7 7.5852 -1.9785 -1.6706 16 6 6.2731 -1.8226 -1.6891 17 6 4.1052 -1.4268 0.0309 18 6 3.5708 -0.6950 1.2661 19 6 2.0407 -0.7231 1.2484 20 1 1.6966 -1.7572 1.2351 21 6 1.5036 -0.0232 2.4984 22 7 1.8916 -0.7839 3.6888 23 6 1.5208 -0.3460 4.9322 24 1 0.9419 0.5599 5.0352 25 6 1.8879 -1.0671 6.0600 26 7 2.5930 -2.1715 5.9344 27 14 1.3814 -0.4702 7.7561 28 1 0.5999 0.7857 7.6258 29 1 0.5468 -1.5058 8.4164 30 1 2.5945 -0.2163 8.5742 31 1 -0.3634 0.5127 0.8907 32 1 -0.3633 0.5151 -0.8892 33 1 -0.3634 -1.0276 -0.0005 34 1 1.7646 -0.1497 -2.1346 35 1 1.6020 -1.7149 -1.2974 36 1 6.2654 1.3376 -2.9135 37 1 10.2226 -1.9728 -1.2998 38 1 10.3022 0.9196 -2.5097 39 1 11.7238 0.0215 -1.7527 40 1 11.4915 -1.8118 -3.4902 41 1 10.0698 -0.9137 -4.2477 42 1 5.6212 -2.6189 -1.3616 43 1 3.8374 -2.4819 0.0869 44 1 5.1896 -1.3270 -0.0148 45 1 3.9333 -1.1897 2.1671 46 1 3.9158 0.3388 1.2541 47 1 1.9193 0.9827 2.5585 48 1 0.4167 0.0357 2.4432 49 1 2.4112 -1.5977 3.5962 50 1 2.8492 -2.6755 6.7225 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185246757.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:27 Heat of formation + Delta-G solvation = 32.671501 kcal Electronic energy + Delta-G solvation = -29992.733971 eV Core-core repulsion = 26020.334075 eV Total energy + Delta-G solvation = -3972.399897 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.61338 -41.18372 -39.28725 -37.98908 -36.65446 -35.33673 -34.84982 -33.64162 -32.87638 -32.05136 -28.53575 -28.12197 -26.74464 -25.72391 -25.45940 -23.98098 -23.24739 -22.82380 -22.43107 -21.42948 -20.57189 -19.26546 -19.05956 -18.21035 -18.12366 -17.33336 -16.74903 -16.49282 -16.21570 -15.77393 -15.71888 -15.54572 -15.46922 -15.23785 -15.13279 -14.78855 -14.49425 -14.32441 -13.98758 -13.89901 -13.36783 -13.15682 -12.95558 -12.95042 -12.85784 -12.76547 -12.66258 -12.37166 -12.15878 -12.08864 -11.99447 -11.92635 -11.88940 -11.64577 -11.50464 -11.43445 -11.19738 -11.06600 -10.88996 -10.48719 -10.40409 -9.76471 -8.95966 -7.94979 -5.22106 -0.71050 -0.15575 1.41314 1.47001 1.47379 1.57083 1.76238 2.38120 2.55862 2.59619 2.81280 3.12219 3.17902 3.31928 3.38793 3.64978 3.70048 3.76429 3.80823 3.86547 3.89968 3.95374 4.07034 4.19489 4.26958 4.32498 4.35016 4.50761 4.54829 4.59796 4.67177 4.71470 4.77914 4.77925 4.83280 4.91118 4.97271 5.07078 5.09189 5.11231 5.16167 5.19936 5.25471 5.30051 5.34600 5.45667 5.50942 5.58510 5.67388 6.16374 6.28481 6.82244 6.86313 7.35239 8.11826 8.35684 9.28489 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011233 B = 0.002543 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2492.060382 B =11005.977198 C =12957.639805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.088 4.088 3 H 0.064 0.936 4 C 0.121 3.879 5 N -0.595 5.595 6 C 0.576 3.424 7 O -0.564 6.564 8 C -0.252 4.252 9 C 0.203 3.797 10 N -0.526 5.526 11 C 0.357 3.643 12 C -0.128 4.128 13 C -0.145 4.145 14 C -0.142 4.142 15 N -0.528 5.528 16 C 0.191 3.809 17 C 0.106 3.894 18 C -0.120 4.120 19 C -0.078 4.078 20 H 0.075 0.925 21 C 0.156 3.844 22 N -0.741 5.741 23 C -0.242 4.242 24 H 0.071 0.929 25 C -0.073 4.073 26 N -0.966 5.966 27 Si 0.968 3.032 28 H -0.269 1.269 29 H -0.293 1.293 30 H -0.294 1.294 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.188 0.812 37 H 0.140 0.860 38 H 0.099 0.901 39 H 0.122 0.878 40 H 0.127 0.873 41 H 0.087 0.913 42 H 0.198 0.802 43 H 0.099 0.901 44 H 0.089 0.911 45 H 0.067 0.933 46 H 0.053 0.947 47 H 0.007 0.993 48 H 0.028 0.972 49 H 0.376 0.624 50 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.752 1.059 -21.133 23.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.108 4.108 3 H 0.082 0.918 4 C -0.001 4.001 5 N -0.326 5.326 6 C 0.363 3.637 7 O -0.444 6.444 8 C -0.260 4.260 9 C 0.036 3.964 10 N -0.240 5.240 11 C 0.092 3.908 12 C -0.148 4.148 13 C -0.183 4.183 14 C -0.180 4.180 15 N -0.242 5.242 16 C 0.024 3.976 17 C -0.017 4.017 18 C -0.158 4.158 19 C -0.097 4.097 20 H 0.094 0.906 21 C 0.030 3.970 22 N -0.384 5.384 23 C -0.374 4.374 24 H 0.089 0.911 25 C -0.266 4.266 26 N -0.617 5.617 27 Si 0.798 3.202 28 H -0.194 1.194 29 H -0.220 1.220 30 H -0.221 1.221 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.110 0.890 35 H 0.108 0.892 36 H 0.205 0.795 37 H 0.158 0.842 38 H 0.117 0.883 39 H 0.141 0.859 40 H 0.145 0.855 41 H 0.106 0.894 42 H 0.215 0.785 43 H 0.117 0.883 44 H 0.107 0.893 45 H 0.086 0.914 46 H 0.072 0.928 47 H 0.025 0.975 48 H 0.046 0.954 49 H 0.209 0.791 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 11.367 1.340 -21.476 24.335 hybrid contribution -1.200 0.150 1.409 1.857 sum 10.167 1.491 -20.066 22.544 Atomic orbital electron populations 1.21799 0.93191 1.02802 1.02364 1.21284 0.97032 0.99227 0.93235 0.91792 1.21715 0.77624 1.02115 0.98602 1.48068 1.07504 1.59565 1.17450 1.17899 0.85541 0.78048 0.82164 1.90775 1.75154 1.42791 1.35642 1.21628 0.95601 0.99704 1.09036 1.23620 0.87188 0.98663 0.86932 1.68295 1.15586 1.22482 1.17632 1.22925 0.97138 0.84070 0.86642 1.20901 0.83797 1.05695 1.04385 1.23106 1.00152 0.93247 1.01770 1.23078 1.01549 1.02282 0.91066 1.68307 1.04725 1.33018 1.18109 1.23967 0.91436 0.95193 0.86984 1.22157 0.98300 0.98424 0.82773 1.21811 0.95826 1.00629 0.97565 1.21232 0.94784 1.00045 0.93633 0.90642 1.20894 0.96885 0.93473 0.85791 1.42552 1.65312 1.29029 1.01546 1.19620 1.26682 1.05865 0.85259 0.91127 1.25481 1.01750 0.98049 1.01273 1.69795 1.44413 1.18443 1.29034 0.85149 0.77108 0.77559 0.80417 1.19367 1.21975 1.22124 0.92666 0.91089 0.91731 0.89043 0.89174 0.79491 0.84180 0.88260 0.85944 0.85487 0.89417 0.78550 0.88265 0.89331 0.91422 0.92844 0.97471 0.95387 0.79146 0.94019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 8.82 71.98 0.63 -2.38 16 2 C -0.09 -2.04 2.40 -10.86 -0.03 -2.07 16 3 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 4 C 0.12 2.49 5.70 86.22 0.49 2.98 16 5 N -0.60 -12.80 2.98 -823.17 -2.45 -15.25 16 6 C 0.58 13.80 7.36 86.78 0.64 14.44 16 7 O -0.56 -16.71 16.37 -3.87 -0.06 -16.77 16 8 C -0.25 -5.42 5.13 -19.91 -0.10 -5.52 16 9 C 0.20 4.32 10.97 85.06 0.93 5.26 16 10 N -0.53 -11.54 9.32 -186.80 -1.74 -13.28 16 11 C 0.36 7.67 7.31 138.70 1.01 8.69 16 12 C -0.13 -2.05 6.23 -11.54 -0.07 -2.12 16 13 C -0.15 -1.84 10.00 30.59 0.31 -1.53 16 14 C -0.14 -1.70 10.23 30.59 0.31 -1.39 16 15 N -0.53 -11.66 10.32 -186.80 -1.93 -13.58 16 16 C 0.19 3.76 8.69 85.06 0.74 4.50 16 17 C 0.11 2.17 4.97 86.36 0.43 2.60 16 18 C -0.12 -3.32 5.25 30.67 0.16 -3.16 16 19 C -0.08 -2.23 1.73 -10.76 -0.02 -2.25 16 20 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 21 C 0.16 5.92 5.41 86.38 0.47 6.39 16 22 N -0.74 -36.25 5.32 -343.45 -1.83 -38.07 16 23 C -0.24 -13.33 9.99 84.03 0.84 -12.50 16 24 H 0.07 3.79 7.83 -2.91 -0.02 3.77 16 25 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 26 N -0.97 -57.76 13.06 21.65 0.28 -57.48 16 27 Si 0.97 45.74 29.55 68.60 2.03 47.76 16 28 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 29 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 30 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 31 H 0.05 1.32 6.30 -2.38 -0.01 1.30 16 32 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.09 1.99 7.00 -2.38 -0.02 1.98 16 35 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.19 3.43 8.06 -2.91 -0.02 3.41 16 37 H 0.14 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.10 1.52 7.53 -2.39 -0.02 1.50 16 39 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.13 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 42 H 0.20 2.89 6.69 -2.91 -0.02 2.87 16 43 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.09 1.72 4.73 -2.39 -0.01 1.71 16 45 H 0.07 2.22 7.15 -2.39 -0.02 2.21 16 46 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 47 H 0.01 0.29 8.14 -2.38 -0.02 0.27 16 48 H 0.03 1.07 6.14 -2.39 -0.01 1.05 16 49 H 0.38 19.23 6.85 -92.71 -0.63 18.59 16 50 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -69.25 398.21 1.84 -67.41 By element: Atomic # 1 Polarization: 30.67 SS G_CDS: 0.32 Total: 30.99 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: 7.22 Total: 8.28 kcal Atomic # 7 Polarization: -130.01 SS G_CDS: -7.66 Total: -137.67 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: -0.06 Total: -16.77 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.76 kcal Total: -69.25 1.84 -67.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185246757.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.081 kcal (2) G-P(sol) polarization free energy of solvation -69.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds