Wall clock time and date at job start Wed Apr 1 2020 03:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.49116 * 2 1 4 4 C 1.53192 * 109.49643 * 120.09885 * 2 1 3 5 5 N 1.46927 * 108.77257 * 174.58987 * 4 2 1 6 6 C 1.34778 * 120.63035 * 126.36979 * 5 4 2 7 7 O 1.21554 * 119.99897 * 354.24937 * 6 5 4 8 8 C 1.47831 * 119.99760 * 174.24914 * 6 5 4 9 9 C 1.39974 * 120.93815 * 306.12921 * 8 6 5 10 10 N 1.32135 * 118.92005 * 179.74218 * 9 8 6 11 11 C 1.31878 * 120.96801 * 0.52345 * 10 9 8 12 12 N 1.31855 * 122.09618 * 359.75083 * 11 10 9 13 13 C 1.32163 * 120.96719 * 359.97310 * 12 11 10 14 14 C 1.50702 * 120.53684 * 180.02562 * 13 12 11 15 15 C 1.52998 * 117.49734 * 13.52917 * 14 13 12 16 16 C 1.52999 * 117.50006 * 304.90248 * 14 13 12 17 17 C 1.46924 * 118.73905 * 306.39289 * 5 4 2 18 18 C 1.53191 * 108.77922 * 53.60512 * 17 5 4 19 19 C 1.53037 * 109.49718 * 239.93993 * 2 1 3 20 20 H 1.09002 * 109.46215 * 298.70248 * 19 2 1 21 21 C 1.52999 * 109.46262 * 58.66152 * 19 2 1 22 22 N 1.46500 * 109.47153 * 185.06982 * 21 19 2 23 23 C 1.36942 * 120.00067 * 180.02562 * 22 21 19 24 24 H 1.07997 * 119.99544 * 359.97438 * 23 22 21 25 25 C 1.38811 * 120.00138 * 179.97438 * 23 22 21 26 26 N 1.31622 * 119.99956 * 359.97438 * 25 23 22 27 27 Si 1.86793 * 119.99877 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.47479 * 60.00057 * 27 25 23 29 29 H 1.48510 * 109.47141 * 180.02562 * 27 25 23 30 30 H 1.48495 * 109.47392 * 299.99811 * 27 25 23 31 31 H 1.09000 * 109.46718 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47052 * 300.05929 * 1 2 3 33 33 H 1.09000 * 109.47115 * 60.06409 * 1 2 3 34 34 H 1.09001 * 109.58784 * 294.37645 * 4 2 1 35 35 H 1.08994 * 109.58715 * 54.66015 * 4 2 1 36 36 H 1.07999 * 120.53883 * 359.97438 * 9 8 6 37 37 H 1.07998 * 118.95424 * 179.72013 * 11 10 9 38 38 H 1.08999 * 115.54616 * 159.23064 * 14 13 12 39 39 H 1.08995 * 117.50131 * 359.97438 * 15 14 13 40 40 H 1.09002 * 117.49736 * 145.01886 * 15 14 13 41 41 H 1.08996 * 117.49728 * 214.97766 * 16 14 13 42 42 H 1.08999 * 117.49900 * 0.02562 * 16 14 13 43 43 H 1.09008 * 109.58689 * 293.81883 * 17 5 4 44 44 H 1.08999 * 109.58934 * 173.39831 * 17 5 4 45 45 H 1.09004 * 109.49218 * 65.31785 * 18 17 5 46 46 H 1.08995 * 109.50382 * 185.38176 * 18 17 5 47 47 H 1.08998 * 109.46890 * 305.06745 * 21 19 2 48 48 H 1.08998 * 109.47267 * 65.06479 * 21 19 2 49 49 H 0.97000 * 120.00041 * 359.97438 * 22 21 19 50 50 H 0.96996 * 119.99947 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0414 -0.7242 1.2494 5 7 3.5047 -0.8294 1.1693 6 6 4.2812 -0.3862 2.1778 7 8 3.7807 0.2000 3.1178 8 6 5.7415 -0.6129 2.1408 9 6 6.2659 -1.8986 1.9637 10 7 7.5776 -2.0549 1.9316 11 6 8.3875 -1.0239 2.0737 12 7 7.9362 0.2027 2.2483 13 6 6.6387 0.4507 2.2877 14 6 6.1336 1.8565 2.4871 15 6 7.1389 2.9982 2.3234 16 6 6.6323 2.6187 3.7164 17 6 4.1054 -1.4265 -0.0312 18 6 3.5709 -0.6945 -1.2662 19 6 2.0409 -0.7226 -1.2486 20 1 1.6968 -1.7568 -1.2359 21 6 1.5038 -0.0224 -2.4984 22 7 1.8917 -0.7828 -3.6890 23 6 1.5209 -0.3445 -4.9323 24 1 0.9421 0.5614 -5.0350 25 6 1.8890 -1.0647 -6.0604 26 7 2.5949 -2.1686 -5.9352 27 14 1.3825 -0.4673 -7.7562 28 1 1.9477 0.8852 -7.9938 29 1 1.8956 -1.4066 -8.7857 30 1 -0.0990 -0.4059 -7.8374 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5147 0.8894 33 1 -0.3633 0.5128 -0.8906 34 1 1.7638 -0.1586 2.1389 35 1 1.6034 -1.7211 1.2988 36 1 5.6090 -2.7485 1.8512 37 1 9.4544 -1.1896 2.0468 38 1 5.1085 2.0379 2.1640 39 1 8.1656 2.7326 2.0720 40 1 6.7753 3.9311 1.8926 41 1 5.9354 3.3018 4.2019 42 1 7.3260 2.1035 4.3808 43 1 3.8377 -2.4817 -0.0876 44 1 5.1897 -1.3244 0.0133 45 1 3.9159 0.3394 -1.2539 46 1 3.9339 -1.1885 -2.1675 47 1 0.4168 0.0364 -2.4431 48 1 1.9193 0.9835 -2.5582 49 1 2.4120 -1.5962 -3.5967 50 1 2.8524 -2.6716 -6.7235 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185594975.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:35 Heat of formation + Delta-G solvation = 29.292212 kcal Electronic energy + Delta-G solvation = -30689.113557 eV Core-core repulsion = 26716.567124 eV Total energy + Delta-G solvation = -3972.546434 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.58428 -41.07077 -39.24190 -38.28455 -36.59599 -35.21698 -34.44602 -33.64793 -33.03737 -32.04249 -28.48011 -28.07145 -26.56321 -26.18939 -25.30302 -23.83459 -23.31432 -22.78671 -22.34651 -21.41484 -20.52551 -19.19938 -19.05260 -18.42645 -17.94600 -17.38667 -16.74916 -16.48743 -16.15195 -15.84701 -15.68930 -15.52377 -15.43437 -15.20245 -15.16839 -14.72309 -14.47606 -14.33754 -13.99617 -13.92198 -13.20096 -13.14791 -12.96450 -12.94222 -12.85842 -12.73899 -12.67745 -12.62123 -12.38644 -12.23249 -11.99280 -11.89482 -11.65208 -11.57488 -11.50140 -11.38322 -11.19712 -10.98017 -10.86726 -10.47997 -10.41485 -9.75263 -8.96000 -7.94430 -5.21848 -0.56798 -0.17665 1.38141 1.47363 1.49435 1.55594 1.80003 2.44574 2.56411 2.77928 2.93499 3.03236 3.17247 3.23804 3.38983 3.65710 3.69805 3.71201 3.82006 3.92368 3.92580 3.98682 4.03102 4.19688 4.24121 4.30135 4.35082 4.50621 4.59443 4.60442 4.67188 4.70733 4.71869 4.78054 4.83299 4.85067 4.97229 5.02144 5.08995 5.10845 5.16737 5.20503 5.22707 5.25865 5.34734 5.45754 5.50720 5.58522 5.72653 6.18168 6.28593 6.87366 6.89536 7.35380 8.12072 8.35910 9.28674 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012299 B = 0.002743 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.135673 B =10205.261333 C =10899.560858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.087 4.087 3 H 0.064 0.936 4 C 0.121 3.879 5 N -0.595 5.595 6 C 0.576 3.424 7 O -0.556 6.556 8 C -0.245 4.245 9 C 0.190 3.810 10 N -0.534 5.534 11 C 0.314 3.686 12 N -0.529 5.529 13 C 0.246 3.754 14 C -0.148 4.148 15 C -0.142 4.142 16 C -0.137 4.137 17 C 0.113 3.887 18 C -0.119 4.119 19 C -0.078 4.078 20 H 0.074 0.926 21 C 0.156 3.844 22 N -0.741 5.741 23 C -0.246 4.246 24 H 0.071 0.929 25 C -0.072 4.072 26 N -0.966 5.966 27 Si 0.969 3.031 28 H -0.280 1.280 29 H -0.295 1.295 30 H -0.279 1.279 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.054 0.946 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.194 0.806 37 H 0.234 0.766 38 H 0.112 0.888 39 H 0.108 0.892 40 H 0.114 0.886 41 H 0.114 0.886 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.082 0.918 45 H 0.052 0.948 46 H 0.066 0.934 47 H 0.028 0.972 48 H 0.007 0.993 49 H 0.376 0.624 50 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.650 3.812 21.353 23.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.107 4.107 3 H 0.082 0.918 4 C -0.001 4.001 5 N -0.326 5.326 6 C 0.363 3.637 7 O -0.435 6.435 8 C -0.252 4.252 9 C 0.023 3.977 10 N -0.247 5.247 11 C 0.028 3.972 12 N -0.243 5.243 13 C 0.100 3.900 14 C -0.167 4.167 15 C -0.179 4.179 16 C -0.175 4.175 17 C -0.009 4.009 18 C -0.157 4.157 19 C -0.096 4.096 20 H 0.093 0.907 21 C 0.030 3.970 22 N -0.385 5.385 23 C -0.378 4.378 24 H 0.089 0.911 25 C -0.264 4.264 26 N -0.617 5.617 27 Si 0.798 3.202 28 H -0.207 1.207 29 H -0.221 1.221 30 H -0.205 1.205 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.110 0.890 35 H 0.108 0.892 36 H 0.211 0.789 37 H 0.250 0.750 38 H 0.130 0.870 39 H 0.126 0.874 40 H 0.132 0.868 41 H 0.132 0.868 42 H 0.114 0.886 43 H 0.114 0.886 44 H 0.100 0.900 45 H 0.071 0.929 46 H 0.084 0.916 47 H 0.046 0.954 48 H 0.025 0.975 49 H 0.208 0.792 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 8.292 4.065 21.695 23.578 hybrid contribution -0.947 -0.036 -1.401 1.692 sum 7.345 4.029 20.293 21.955 Atomic orbital electron populations 1.21799 0.93200 1.02788 1.02362 1.21355 0.97009 0.99150 0.93182 0.91787 1.21795 0.77653 1.02054 0.98570 1.48095 1.07419 1.59676 1.17449 1.17909 0.85528 0.78053 0.82210 1.90773 1.75006 1.42231 1.35461 1.21453 0.95502 0.97497 1.10773 1.23802 0.92202 0.95376 0.86291 1.68560 1.04477 1.35712 1.15959 1.25886 1.02487 0.82188 0.86675 1.68263 1.14661 1.25144 1.16250 1.21005 0.88274 0.94586 0.86099 1.21015 0.99748 0.87531 1.08386 1.23078 0.98843 0.96876 0.99134 1.22978 1.02711 1.01257 0.90516 1.21912 0.97988 0.98251 0.82786 1.21795 0.95883 1.00536 0.97493 1.21225 0.94704 1.00022 0.93695 0.90721 1.20887 0.96869 0.93460 0.85772 1.42541 1.65309 1.29066 1.01540 1.19561 1.26943 1.05999 0.85290 0.91118 1.25482 1.01644 0.98000 1.01295 1.69782 1.44240 1.18475 1.29205 0.85283 0.77918 0.77119 0.79877 1.20652 1.22082 1.20482 0.91763 0.91069 0.92663 0.89038 0.89209 0.78927 0.74964 0.87049 0.87405 0.86821 0.86785 0.88560 0.88608 0.90001 0.92935 0.91565 0.95385 0.97480 0.79173 0.93999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 8.82 71.98 0.63 -2.39 16 2 C -0.09 -2.04 2.41 -10.71 -0.03 -2.06 16 3 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 4 C 0.12 2.52 5.73 86.36 0.49 3.01 16 5 N -0.60 -13.13 2.97 -822.33 -2.44 -15.57 16 6 C 0.58 14.22 6.35 86.78 0.55 14.77 16 7 O -0.56 -16.63 15.42 -3.88 -0.06 -16.69 16 8 C -0.24 -5.52 4.62 -19.91 -0.09 -5.61 16 9 C 0.19 3.65 9.11 85.07 0.77 4.42 16 10 N -0.53 -10.41 10.42 -198.97 -2.07 -12.48 16 11 C 0.31 5.51 12.27 180.84 2.22 7.73 16 12 N -0.53 -11.03 9.54 -187.07 -1.78 -12.81 16 13 C 0.25 5.66 6.50 42.92 0.28 5.94 16 14 C -0.15 -3.20 5.28 -11.54 -0.06 -3.26 16 15 C -0.14 -2.42 10.04 30.60 0.31 -2.12 16 16 C -0.14 -2.39 10.23 30.60 0.31 -2.08 16 17 C 0.11 2.43 5.63 86.36 0.49 2.91 16 18 C -0.12 -3.36 5.25 30.67 0.16 -3.20 16 19 C -0.08 -2.24 1.73 -10.77 -0.02 -2.26 16 20 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 21 C 0.16 5.98 5.41 86.38 0.47 6.45 16 22 N -0.74 -36.46 5.32 -343.46 -1.83 -38.28 16 23 C -0.25 -13.58 9.99 84.03 0.84 -12.74 16 24 H 0.07 3.79 7.83 -2.91 -0.02 3.76 16 25 C -0.07 -4.06 5.50 84.86 0.47 -3.60 16 26 N -0.97 -57.91 13.06 21.65 0.28 -57.62 16 27 Si 0.97 45.69 29.55 68.60 2.03 47.72 16 28 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 29 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 30 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 31 H 0.06 1.27 8.14 -2.39 -0.02 1.26 16 32 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.05 1.32 6.29 -2.39 -0.02 1.31 16 34 H 0.09 2.00 7.00 -2.39 -0.02 1.99 16 35 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.19 2.74 7.81 -2.91 -0.02 2.72 16 37 H 0.23 2.23 8.06 -2.91 -0.02 2.21 16 38 H 0.11 2.72 6.94 -2.39 -0.02 2.70 16 39 H 0.11 1.88 7.66 -2.39 -0.02 1.86 16 40 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.10 1.75 8.14 -2.38 -0.02 1.73 16 44 H 0.08 1.70 5.39 -2.39 -0.01 1.69 16 45 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 46 H 0.07 2.22 7.15 -2.39 -0.02 2.21 16 47 H 0.03 1.08 6.14 -2.39 -0.01 1.06 16 48 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 49 H 0.38 19.34 6.85 -92.71 -0.63 18.71 16 50 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 Total: -1.00 -68.96 397.46 2.24 -66.72 By element: Atomic # 1 Polarization: 32.79 SS G_CDS: 0.32 Total: 33.11 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: 7.80 Total: 5.92 kcal Atomic # 7 Polarization: -128.93 SS G_CDS: -7.85 Total: -136.78 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -0.06 Total: -16.69 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -68.96 2.24 -66.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185594975.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.017 kcal (2) G-P(sol) polarization free energy of solvation -68.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds