Wall clock time and date at job start Wed Apr 1 2020 03:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46900 * 109.47097 * 2 1 4 4 C 1.46904 * 111.00105 * 298.14987 * 3 2 1 5 5 C 1.53007 * 109.46980 * 291.29183 * 4 3 2 6 6 C 1.46898 * 110.99983 * 62.10430 * 3 2 1 7 7 C 1.52996 * 109.47159 * 66.04629 * 6 3 2 8 8 N 1.46496 * 109.47024 * 180.02562 * 7 6 3 9 9 C 1.34704 * 125.86725 * 125.00051 * 8 7 6 10 10 C 1.36623 * 107.59446 * 180.02562 * 9 8 7 11 11 C 1.48232 * 126.24830 * 179.97438 * 10 9 8 12 12 C 1.40139 * 119.51719 * 179.72253 * 11 10 9 13 13 C 1.38292 * 119.57012 * 180.27476 * 12 11 10 14 14 C 1.39145 * 118.64940 * 0.02562 * 13 12 11 15 15 O 1.35553 * 120.48168 * 180.02562 * 14 13 12 16 16 C 1.42891 * 117.00230 * 359.97438 * 15 14 13 17 17 C 1.41358 * 119.03524 * 359.97438 * 14 13 12 18 18 C 1.40962 * 119.83321 * 179.97438 * 17 14 13 19 19 H 1.08000 * 120.00149 * 353.81969 * 18 17 14 20 20 C 1.40009 * 120.00294 * 173.83018 * 18 17 14 21 21 N 1.30788 * 119.99710 * 6.05830 * 20 18 17 22 22 Si 1.86793 * 120.00160 * 186.05425 * 20 18 17 23 23 H 1.48504 * 109.47021 * 94.98656 * 22 20 18 24 24 H 1.48499 * 109.47193 * 214.98251 * 22 20 18 25 25 H 1.48498 * 109.47475 * 334.98831 * 22 20 18 26 26 N 1.32171 * 119.52501 * 0.02562 * 11 10 9 27 27 C 1.40964 * 107.49431 * 0.25995 * 10 9 8 28 28 N 1.30620 * 108.06843 * 359.56071 * 27 10 9 29 29 H 1.08997 * 109.47056 * 179.85755 * 1 2 3 30 30 H 1.08998 * 109.46825 * 299.86256 * 1 2 3 31 31 H 1.09002 * 109.47150 * 59.86480 * 1 2 3 32 32 H 1.09005 * 109.47033 * 240.00165 * 2 1 3 33 33 H 1.08996 * 109.46986 * 120.00415 * 2 1 3 34 34 H 1.09003 * 109.47261 * 51.28506 * 4 3 2 35 35 H 1.08991 * 109.47220 * 171.29580 * 4 3 2 36 36 H 1.08998 * 109.47166 * 64.86735 * 5 4 3 37 37 H 1.08998 * 109.46965 * 184.86609 * 5 4 3 38 38 H 1.08997 * 109.47200 * 304.86578 * 5 4 3 39 39 H 1.09004 * 109.47076 * 306.04557 * 6 3 2 40 40 H 1.08998 * 109.46782 * 186.04638 * 6 3 2 41 41 H 1.09000 * 109.47437 * 59.99562 * 7 6 3 42 42 H 1.09008 * 109.47271 * 299.99657 * 7 6 3 43 43 H 1.07997 * 126.19989 * 0.04976 * 9 8 7 44 44 H 1.08001 * 120.21837 * 0.28648 * 12 11 10 45 45 H 1.07999 * 120.68285 * 180.02562 * 13 12 11 46 46 H 1.08999 * 109.47337 * 59.99757 * 16 15 14 47 47 H 1.09001 * 109.47357 * 180.02562 * 16 15 14 48 48 H 1.08999 * 109.47142 * 299.99792 * 16 15 14 49 49 H 0.96999 * 120.00231 * 180.02562 * 21 20 18 50 50 H 1.07998 * 125.95810 * 179.69955 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5852 2.0970 -1.2092 5 6 2.3052 1.5176 -2.4287 6 6 1.5902 2.0952 1.2121 7 6 2.2647 1.4707 2.4351 8 7 1.8360 2.1786 3.6439 9 6 1.2767 1.6150 4.7321 10 6 1.0253 2.6128 5.6308 11 6 0.4126 2.4514 6.9709 12 6 0.2239 3.5771 7.7839 13 6 -0.3424 3.4270 9.0366 14 6 -0.7096 2.1516 9.4543 15 8 -1.2682 1.9619 10.6747 16 6 -1.4539 3.1204 11.4903 17 6 -0.4928 1.0566 8.5869 18 6 -0.8580 -0.2428 8.9932 19 1 -1.2089 -0.4153 9.9999 20 6 -0.7656 -1.3101 8.0917 21 7 -0.2302 -1.1257 6.9127 22 14 -1.4067 -2.9973 8.5728 23 1 -2.7961 -3.1595 8.0743 24 1 -0.5408 -4.0449 7.9746 25 1 -1.3930 -3.1288 10.0519 26 7 0.0578 1.2471 7.3842 27 6 1.4488 3.8245 5.0482 28 7 1.9364 3.5571 3.8663 29 1 -0.3633 -1.0276 -0.0026 30 1 -0.3633 0.5117 0.8912 31 1 -0.3633 0.5159 -0.8888 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 0.5086 1.9793 -1.3331 35 1 1.8264 3.1556 -1.1140 36 1 1.9969 0.4824 -2.5747 37 1 2.0491 2.1012 -3.3130 38 1 3.3824 1.5566 -2.2671 39 1 0.5078 2.0172 1.3146 40 1 1.8734 3.1451 1.1375 41 1 3.3471 1.5486 2.3325 42 1 1.9815 0.4207 2.5097 43 1 1.0658 0.5647 4.8693 44 1 0.5185 4.5556 7.4344 45 1 -0.4965 4.2823 9.6778 46 1 -2.1064 3.8260 10.9761 47 1 -1.9079 2.8290 12.4375 48 1 -0.4886 3.5899 11.6798 49 1 -0.1665 -1.8649 6.2879 50 1 1.3837 4.8027 5.5012 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239201738.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:07 Heat of formation + Delta-G solvation = 81.887560 kcal Electronic energy + Delta-G solvation = -29709.864842 eV Core-core repulsion = 25739.599114 eV Total energy + Delta-G solvation = -3970.265728 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.62886 -38.83296 -38.64870 -36.57436 -33.93006 -33.41961 -31.57528 -30.60383 -30.47055 -30.14211 -28.36937 -27.19153 -26.42007 -25.24080 -24.55801 -22.90027 -21.79626 -21.54290 -20.16432 -19.69634 -19.34038 -17.55159 -16.77870 -16.55973 -16.43865 -15.90225 -15.38976 -15.07146 -14.72194 -14.70317 -14.49641 -14.16824 -13.81544 -13.60704 -13.29023 -13.12400 -13.00127 -12.71550 -12.54556 -12.44358 -12.30467 -12.17233 -11.94294 -11.77531 -11.68073 -11.54233 -11.28803 -11.24975 -11.20356 -11.10742 -10.71094 -10.60026 -10.49562 -10.39564 -10.17314 -9.73173 -9.40839 -8.91748 -8.54536 -8.27573 -8.03435 -7.70011 -6.67122 -6.43094 -4.36111 2.26845 2.64826 2.82673 2.88406 3.10642 3.15734 3.17380 3.75628 3.80894 3.97954 4.47590 4.55176 4.68180 4.84038 4.90720 4.92173 4.97495 5.07710 5.17904 5.24425 5.33303 5.35185 5.44204 5.58922 5.62272 5.70888 5.73429 5.74709 5.75709 5.77886 5.82204 5.90274 5.92683 5.94416 5.98366 6.07746 6.10369 6.24490 6.33949 6.54239 6.77374 6.81986 6.88857 6.99497 7.11869 7.22937 7.44970 7.54438 7.67047 7.96524 8.22172 8.25969 8.35338 8.74258 9.05537 10.07653 10.31616 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011698 B = 0.002780 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2392.910023 B =10069.351520 C =12127.500317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.041 3.959 3 N -0.534 5.534 4 C 0.046 3.954 5 C -0.147 4.147 6 C 0.041 3.959 7 C 0.144 3.856 8 N -0.382 5.382 9 C 0.095 3.905 10 C -0.169 4.169 11 C 0.198 3.802 12 C -0.275 4.275 13 C -0.143 4.143 14 C -0.038 4.038 15 O -0.310 6.310 16 C 0.034 3.966 17 C 0.258 3.742 18 C -0.415 4.415 19 H 0.089 0.911 20 C 0.070 3.930 21 N -0.721 5.721 22 Si 0.907 3.093 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.261 1.261 26 N -0.459 5.459 27 C 0.062 3.938 28 N -0.314 5.314 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.040 0.960 35 H 0.073 0.927 36 H 0.053 0.947 37 H 0.057 0.943 38 H 0.064 0.936 39 H 0.046 0.954 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.093 0.907 43 H 0.188 0.812 44 H 0.096 0.904 45 H 0.102 0.898 46 H 0.039 0.961 47 H 0.082 0.918 48 H 0.039 0.961 49 H 0.269 0.731 50 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.466 2.532 -12.320 12.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.087 4.087 3 N -0.258 5.258 4 C -0.082 4.082 5 C -0.204 4.204 6 C -0.087 4.087 7 C 0.022 3.978 8 N -0.165 5.165 9 C -0.051 4.051 10 C -0.181 4.181 11 C 0.055 3.945 12 C -0.299 4.299 13 C -0.168 4.168 14 C -0.086 4.086 15 O -0.223 6.223 16 C -0.062 4.062 17 C 0.130 3.870 18 C -0.447 4.447 19 H 0.108 0.892 20 C -0.154 4.154 21 N -0.344 5.344 22 Si 0.732 3.268 23 H -0.196 1.196 24 H -0.203 1.203 25 H -0.185 1.185 26 N -0.175 5.175 27 C -0.126 4.126 28 N -0.135 5.135 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.058 0.942 35 H 0.092 0.908 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.064 0.936 40 H 0.106 0.894 41 H 0.105 0.895 42 H 0.111 0.889 43 H 0.205 0.795 44 H 0.114 0.886 45 H 0.120 0.880 46 H 0.057 0.943 47 H 0.100 0.900 48 H 0.057 0.943 49 H 0.080 0.920 50 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 3.689 1.908 -14.130 14.728 hybrid contribution -1.730 0.115 1.583 2.348 sum 1.959 2.023 -12.548 12.860 Atomic orbital electron populations 1.22435 0.98074 1.02730 1.02261 1.22284 0.93163 0.90157 1.03090 1.62215 1.59507 1.02404 1.01709 1.22123 0.97869 0.98350 0.89816 1.21772 1.01505 1.00748 0.96420 1.22371 0.98364 0.99207 0.88764 1.21492 1.00366 0.94939 0.81038 1.48290 1.49012 1.05440 1.13727 1.22910 0.95563 1.00621 0.86027 1.18777 1.11327 0.91656 0.96322 1.18943 0.94969 0.89966 0.90624 1.20873 1.14601 0.97813 0.96600 1.20847 1.03588 0.94848 0.97473 1.20303 1.06204 0.94816 0.87315 1.85934 1.78204 1.32043 1.26144 1.22734 0.99800 0.89293 0.94396 1.18097 0.91319 0.91281 0.86310 1.19485 1.35863 0.90435 0.98938 0.89249 1.26008 0.94056 1.00713 0.94597 1.70140 1.27736 1.31567 1.04938 0.86311 0.79273 0.81069 0.80169 1.19608 1.20258 1.18483 1.68890 1.15186 1.19360 1.14028 1.23878 0.97618 0.99111 0.91962 1.77022 1.25572 0.92098 1.18825 0.91778 0.92064 0.92430 0.90316 0.90327 0.94193 0.90826 0.92805 0.92403 0.91737 0.93618 0.89429 0.89479 0.88917 0.79515 0.88565 0.87999 0.94253 0.89992 0.94257 0.92026 0.80440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.81 9.27 37.16 0.34 -1.47 16 2 C 0.04 0.37 5.67 -3.82 -0.02 0.34 16 3 N -0.53 -5.31 4.69 -234.62 -1.10 -6.41 16 4 C 0.05 0.40 5.51 -3.82 -0.02 0.38 16 5 C -0.15 -1.07 9.79 37.16 0.36 -0.71 16 6 C 0.04 0.49 4.93 -3.83 -0.02 0.47 16 7 C 0.14 1.85 6.43 -4.05 -0.03 1.82 16 8 N -0.38 -6.43 3.67 -61.08 -0.22 -6.65 16 9 C 0.10 1.85 11.14 -16.87 -0.19 1.67 16 10 C -0.17 -3.58 6.06 -105.34 -0.64 -4.22 16 11 C 0.20 4.78 6.76 -82.90 -0.56 4.22 16 12 C -0.28 -6.21 9.61 -38.85 -0.37 -6.58 16 13 C -0.14 -3.24 9.11 -39.23 -0.36 -3.59 16 14 C -0.04 -0.95 6.74 -38.06 -0.26 -1.21 16 15 O -0.31 -7.11 9.62 -18.35 -0.18 -7.28 16 16 C 0.03 0.57 9.83 101.05 0.99 1.57 16 17 C 0.26 7.06 6.56 -84.86 -0.56 6.50 16 18 C -0.42 -11.14 8.92 -37.89 -0.34 -11.48 16 19 H 0.09 2.35 7.33 -52.49 -0.38 1.97 16 20 C 0.07 1.75 5.49 -17.33 -0.10 1.66 16 21 N -0.72 -18.10 11.48 55.55 0.64 -17.46 16 22 Si 0.91 18.48 29.56 -169.99 -5.03 13.46 16 23 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 24 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 25 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 26 N -0.46 -12.28 7.56 -7.56 -0.06 -12.34 16 27 C 0.06 1.14 11.40 -17.04 -0.19 0.94 16 28 N -0.31 -5.63 12.37 30.82 0.38 -5.25 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.67 6.33 -51.93 -0.33 0.34 16 31 H 0.06 0.51 6.26 -51.93 -0.33 0.18 16 32 H 0.08 0.63 6.59 -51.93 -0.34 0.28 16 33 H 0.08 0.71 6.38 -51.93 -0.33 0.37 16 34 H 0.04 0.35 5.94 -51.93 -0.31 0.04 16 35 H 0.07 0.65 7.88 -51.93 -0.41 0.24 16 36 H 0.05 0.38 6.82 -51.93 -0.35 0.02 16 37 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.05 0.58 6.07 -51.93 -0.32 0.27 16 40 H 0.09 1.12 7.90 -51.93 -0.41 0.71 16 41 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.09 1.07 6.43 -51.92 -0.33 0.73 16 43 H 0.19 3.75 8.06 -52.49 -0.42 3.32 16 44 H 0.10 1.88 7.00 -52.49 -0.37 1.52 16 45 H 0.10 1.98 6.43 -52.49 -0.34 1.64 16 46 H 0.04 0.62 7.69 -51.93 -0.40 0.22 16 47 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 48 H 0.04 0.62 7.69 -51.93 -0.40 0.22 16 49 H 0.27 6.06 8.30 -40.82 -0.34 5.72 16 50 H 0.18 2.78 7.31 -52.49 -0.38 2.40 16 LS Contribution 400.59 15.07 6.04 6.04 Total: -1.00 -30.08 400.59 -8.87 -38.96 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -7.40 Total: 6.63 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: -1.94 Total: -9.69 kcal Atomic # 7 Polarization: -47.75 SS G_CDS: -0.36 Total: -48.11 kcal Atomic # 8 Polarization: -7.11 SS G_CDS: -0.18 Total: -7.28 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.03 Total: 13.46 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -30.08 -8.87 -38.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239201738.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.843 kcal (2) G-P(sol) polarization free energy of solvation -30.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds