Wall clock time and date at job start Wed Apr 1 2020 03:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46900 * 109.47097 * 2 1 4 4 C 1.46904 * 111.00105 * 298.14987 * 3 2 1 5 5 C 1.53007 * 109.46980 * 291.29183 * 4 3 2 6 6 C 1.46898 * 110.99983 * 62.10430 * 3 2 1 7 7 C 1.52996 * 109.47159 * 66.04629 * 6 3 2 8 8 N 1.46496 * 109.47024 * 180.02562 * 7 6 3 9 9 C 1.34704 * 125.86725 * 125.00051 * 8 7 6 10 10 C 1.36623 * 107.59446 * 180.02562 * 9 8 7 11 11 C 1.48232 * 126.24830 * 179.97438 * 10 9 8 12 12 C 1.40139 * 119.51719 * 179.72253 * 11 10 9 13 13 C 1.38292 * 119.57012 * 180.27476 * 12 11 10 14 14 C 1.39145 * 118.64940 * 0.02562 * 13 12 11 15 15 O 1.35553 * 120.48168 * 180.02562 * 14 13 12 16 16 C 1.42891 * 117.00230 * 359.97438 * 15 14 13 17 17 C 1.41358 * 119.03524 * 359.97438 * 14 13 12 18 18 C 1.40962 * 119.83321 * 179.97438 * 17 14 13 19 19 H 1.08000 * 120.00149 * 353.81969 * 18 17 14 20 20 C 1.40009 * 120.00294 * 173.83018 * 18 17 14 21 21 N 1.30788 * 119.99710 * 6.05830 * 20 18 17 22 22 Si 1.86793 * 120.00160 * 186.05425 * 20 18 17 23 23 H 1.48504 * 109.47021 * 94.98656 * 22 20 18 24 24 H 1.48499 * 109.47193 * 214.98251 * 22 20 18 25 25 H 1.48498 * 109.47475 * 334.98831 * 22 20 18 26 26 N 1.32171 * 119.52501 * 0.02562 * 11 10 9 27 27 C 1.40964 * 107.49431 * 0.25995 * 10 9 8 28 28 N 1.30620 * 108.06843 * 359.56071 * 27 10 9 29 29 H 1.08997 * 109.47056 * 179.85755 * 1 2 3 30 30 H 1.08998 * 109.46825 * 299.86256 * 1 2 3 31 31 H 1.09002 * 109.47150 * 59.86480 * 1 2 3 32 32 H 1.09005 * 109.47033 * 240.00165 * 2 1 3 33 33 H 1.08996 * 109.46986 * 120.00415 * 2 1 3 34 34 H 1.09003 * 109.47261 * 51.28506 * 4 3 2 35 35 H 1.08991 * 109.47220 * 171.29580 * 4 3 2 36 36 H 1.08998 * 109.47166 * 64.86735 * 5 4 3 37 37 H 1.08998 * 109.46965 * 184.86609 * 5 4 3 38 38 H 1.08997 * 109.47200 * 304.86578 * 5 4 3 39 39 H 1.09004 * 109.47076 * 306.04557 * 6 3 2 40 40 H 1.08998 * 109.46782 * 186.04638 * 6 3 2 41 41 H 1.09000 * 109.47437 * 59.99562 * 7 6 3 42 42 H 1.09008 * 109.47271 * 299.99657 * 7 6 3 43 43 H 1.07997 * 126.19989 * 0.04976 * 9 8 7 44 44 H 1.08001 * 120.21837 * 0.28648 * 12 11 10 45 45 H 1.07999 * 120.68285 * 180.02562 * 13 12 11 46 46 H 1.08999 * 109.47337 * 59.99757 * 16 15 14 47 47 H 1.09001 * 109.47357 * 180.02562 * 16 15 14 48 48 H 1.08999 * 109.47142 * 299.99792 * 16 15 14 49 49 H 0.96999 * 120.00231 * 180.02562 * 21 20 18 50 50 H 1.07998 * 125.95810 * 179.69955 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5852 2.0970 -1.2092 5 6 2.3052 1.5176 -2.4287 6 6 1.5902 2.0952 1.2121 7 6 2.2647 1.4707 2.4351 8 7 1.8360 2.1786 3.6439 9 6 1.2767 1.6150 4.7321 10 6 1.0253 2.6128 5.6308 11 6 0.4126 2.4514 6.9709 12 6 0.2239 3.5771 7.7839 13 6 -0.3424 3.4270 9.0366 14 6 -0.7096 2.1516 9.4543 15 8 -1.2682 1.9619 10.6747 16 6 -1.4539 3.1204 11.4903 17 6 -0.4928 1.0566 8.5869 18 6 -0.8580 -0.2428 8.9932 19 1 -1.2089 -0.4153 9.9999 20 6 -0.7656 -1.3101 8.0917 21 7 -0.2302 -1.1257 6.9127 22 14 -1.4067 -2.9973 8.5728 23 1 -2.7961 -3.1595 8.0743 24 1 -0.5408 -4.0449 7.9746 25 1 -1.3930 -3.1288 10.0519 26 7 0.0578 1.2471 7.3842 27 6 1.4488 3.8245 5.0482 28 7 1.9364 3.5571 3.8663 29 1 -0.3633 -1.0276 -0.0026 30 1 -0.3633 0.5117 0.8912 31 1 -0.3633 0.5159 -0.8888 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 0.5086 1.9793 -1.3331 35 1 1.8264 3.1556 -1.1140 36 1 1.9969 0.4824 -2.5747 37 1 2.0491 2.1012 -3.3130 38 1 3.3824 1.5566 -2.2671 39 1 0.5078 2.0172 1.3146 40 1 1.8734 3.1451 1.1375 41 1 3.3471 1.5486 2.3325 42 1 1.9815 0.4207 2.5097 43 1 1.0658 0.5647 4.8693 44 1 0.5185 4.5556 7.4344 45 1 -0.4965 4.2823 9.6778 46 1 -2.1064 3.8260 10.9761 47 1 -1.9079 2.8290 12.4375 48 1 -0.4886 3.5899 11.6798 49 1 -0.1665 -1.8649 6.2879 50 1 1.3837 4.8027 5.5012 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239201738.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:06 Heat of formation + Delta-G solvation = 63.929795 kcal Electronic energy + Delta-G solvation = -29710.643550 eV Core-core repulsion = 25739.599114 eV Total energy + Delta-G solvation = -3971.044435 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.07591 -40.50541 -39.56057 -38.29305 -35.58758 -34.76941 -32.41175 -32.21198 -32.16043 -31.28966 -29.85660 -28.36864 -28.00074 -26.83718 -25.39587 -23.97391 -23.44249 -23.21449 -21.33003 -21.11099 -20.55595 -19.29867 -18.32002 -18.06285 -17.39146 -17.27856 -16.68285 -16.44877 -16.28181 -16.12291 -15.73467 -15.47313 -14.94574 -14.76299 -14.72634 -14.44447 -14.16097 -14.02698 -13.95773 -13.78150 -13.47609 -13.34562 -13.03750 -12.94754 -12.89828 -12.85663 -12.59602 -12.55458 -12.38972 -12.33377 -12.08359 -11.94661 -11.93892 -11.70162 -11.46164 -11.36207 -11.20557 -10.31544 -9.96832 -9.81611 -9.54897 -9.35950 -8.41563 -8.25196 -6.28239 0.60059 1.04950 1.16250 1.43523 1.52559 1.54622 1.56405 2.13758 2.28411 2.90336 2.91868 2.99692 3.49935 3.90520 3.93909 3.98005 4.01306 4.08480 4.20880 4.22883 4.29912 4.30804 4.35229 4.36089 4.43170 4.51126 4.51500 4.55403 4.63873 4.65590 4.69517 4.75830 4.79196 4.88654 4.92787 4.98031 5.09016 5.11890 5.16019 5.22609 5.29123 5.39776 5.41398 5.59471 5.71470 5.80466 5.95381 6.05202 6.16106 6.20327 6.38503 6.48433 6.77540 6.88177 7.23563 8.22042 8.51465 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011698 B = 0.002780 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2392.910023 B =10069.351520 C =12127.500317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.040 3.960 3 N -0.535 5.535 4 C 0.043 3.957 5 C -0.141 4.141 6 C 0.055 3.945 7 C 0.139 3.861 8 N -0.371 5.371 9 C 0.095 3.905 10 C -0.199 4.199 11 C 0.176 3.824 12 C -0.273 4.273 13 C -0.142 4.142 14 C -0.058 4.058 15 O -0.336 6.336 16 C 0.026 3.974 17 C 0.219 3.781 18 C -0.454 4.454 19 H 0.080 0.920 20 C 0.029 3.971 21 N -0.748 5.748 22 Si 0.981 3.019 23 H -0.267 1.267 24 H -0.264 1.264 25 H -0.263 1.263 26 N -0.484 5.484 27 C 0.066 3.934 28 N -0.314 5.314 29 H 0.070 0.930 30 H 0.040 0.960 31 H 0.062 0.938 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.040 0.960 35 H 0.071 0.929 36 H 0.058 0.942 37 H 0.070 0.930 38 H 0.059 0.941 39 H 0.033 0.967 40 H 0.078 0.922 41 H 0.097 0.903 42 H 0.105 0.895 43 H 0.177 0.823 44 H 0.129 0.871 45 H 0.136 0.864 46 H 0.050 0.950 47 H 0.112 0.888 48 H 0.050 0.950 49 H 0.277 0.723 50 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.765 3.017 -13.325 13.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.087 4.087 3 N -0.259 5.259 4 C -0.084 4.084 5 C -0.199 4.199 6 C -0.074 4.074 7 C 0.018 3.982 8 N -0.153 5.153 9 C -0.053 4.053 10 C -0.211 4.211 11 C 0.034 3.966 12 C -0.296 4.296 13 C -0.166 4.166 14 C -0.106 4.106 15 O -0.250 6.250 16 C -0.069 4.069 17 C 0.091 3.909 18 C -0.486 4.486 19 H 0.098 0.902 20 C -0.192 4.192 21 N -0.371 5.371 22 Si 0.802 3.198 23 H -0.192 1.192 24 H -0.189 1.189 25 H -0.187 1.187 26 N -0.199 5.199 27 C -0.121 4.121 28 N -0.135 5.135 29 H 0.089 0.911 30 H 0.059 0.941 31 H 0.080 0.920 32 H 0.112 0.888 33 H 0.096 0.904 34 H 0.058 0.942 35 H 0.090 0.910 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.051 0.949 40 H 0.096 0.904 41 H 0.115 0.885 42 H 0.123 0.877 43 H 0.194 0.806 44 H 0.147 0.853 45 H 0.154 0.846 46 H 0.069 0.931 47 H 0.130 0.870 48 H 0.069 0.931 49 H 0.088 0.912 50 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 4.006 2.422 -15.165 15.871 hybrid contribution -1.787 0.099 1.851 2.575 sum 2.220 2.521 -13.314 13.731 Atomic orbital electron populations 1.22391 0.98304 1.02933 1.01437 1.22347 0.92902 0.89627 1.03840 1.62251 1.59483 1.02803 1.01343 1.22201 0.98102 0.98302 0.89801 1.21730 1.00953 1.01136 0.96033 1.22148 0.97345 0.98751 0.89175 1.21793 1.00996 0.95397 0.80026 1.48536 1.47683 1.05146 1.13961 1.22752 0.95656 1.00073 0.86836 1.18850 1.13060 0.93393 0.95839 1.19481 0.95022 0.89937 0.92159 1.21298 1.13160 0.98830 0.96288 1.21224 1.02443 0.95082 0.97896 1.20372 1.06929 0.95163 0.88138 1.85873 1.78073 1.35201 1.25820 1.23083 1.00950 0.88123 0.94780 1.18539 0.92340 0.92574 0.87462 1.19635 1.38092 0.91637 0.99221 0.90226 1.26783 0.94004 1.04038 0.94377 1.70197 1.28150 1.33037 1.05681 0.85223 0.78751 0.76317 0.79552 1.19156 1.18859 1.18665 1.68828 1.15846 1.20992 1.14267 1.24192 0.96875 0.99343 0.91676 1.77003 1.25347 0.92522 1.18606 0.91086 0.94114 0.91954 0.88756 0.90399 0.94205 0.91049 0.92346 0.91137 0.92153 0.94873 0.90360 0.88482 0.87665 0.80607 0.85289 0.84611 0.93120 0.86970 0.93122 0.91198 0.77829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.37 9.27 71.98 0.67 -2.71 16 2 C 0.04 0.67 5.67 86.30 0.49 1.15 16 3 N -0.53 -9.93 4.69 -896.21 -4.20 -14.13 16 4 C 0.04 0.70 5.51 86.30 0.48 1.17 16 5 C -0.14 -1.77 9.79 71.98 0.70 -1.06 16 6 C 0.05 1.24 4.93 86.30 0.43 1.67 16 7 C 0.14 3.45 6.43 86.38 0.56 4.01 16 8 N -0.37 -12.34 3.67 -347.17 -1.27 -13.61 16 9 C 0.09 3.77 11.14 83.87 0.93 4.70 16 10 C -0.20 -8.47 6.06 -20.33 -0.12 -8.60 16 11 C 0.18 8.65 6.76 42.21 0.29 8.93 16 12 C -0.27 -12.06 9.61 22.74 0.22 -11.84 16 13 C -0.14 -6.31 9.11 22.50 0.21 -6.10 16 14 C -0.06 -2.95 6.74 23.26 0.16 -2.79 16 15 O -0.34 -15.55 9.62 -88.58 -0.85 -16.40 16 16 C 0.03 0.83 9.83 113.37 1.11 1.94 16 17 C 0.22 12.48 6.56 40.30 0.26 12.75 16 18 C -0.45 -25.49 8.92 23.37 0.21 -25.28 16 19 H 0.08 4.42 7.33 -2.91 -0.02 4.40 16 20 C 0.03 1.51 5.49 85.28 0.47 1.98 16 21 N -0.75 -38.82 11.48 21.84 0.25 -38.57 16 22 Si 0.98 38.82 29.56 68.60 2.03 40.85 16 23 H -0.27 -10.26 7.11 99.48 0.71 -9.56 16 24 H -0.26 -9.77 7.11 99.48 0.71 -9.07 16 25 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 26 N -0.48 -26.83 7.56 -177.84 -1.34 -28.18 16 27 C 0.07 2.36 11.40 85.54 0.98 3.33 16 28 N -0.31 -10.89 12.37 -56.41 -0.70 -11.59 16 29 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.04 0.88 6.33 -2.39 -0.02 0.87 16 31 H 0.06 1.02 6.26 -2.39 -0.01 1.01 16 32 H 0.09 1.29 6.59 -2.38 -0.02 1.28 16 33 H 0.08 1.30 6.38 -2.39 -0.02 1.28 16 34 H 0.04 0.65 5.94 -2.39 -0.01 0.63 16 35 H 0.07 1.18 7.88 -2.39 -0.02 1.16 16 36 H 0.06 0.68 6.82 -2.39 -0.02 0.66 16 37 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.03 0.84 6.07 -2.38 -0.01 0.83 16 40 H 0.08 1.94 7.90 -2.39 -0.02 1.92 16 41 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 42 H 0.11 2.36 6.43 -2.38 -0.02 2.35 16 43 H 0.18 7.36 8.06 -2.91 -0.02 7.34 16 44 H 0.13 4.72 7.00 -2.91 -0.02 4.70 16 45 H 0.14 4.93 6.43 -2.91 -0.02 4.92 16 46 H 0.05 1.49 7.69 -2.39 -0.02 1.47 16 47 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 48 H 0.05 1.49 7.69 -2.39 -0.02 1.47 16 49 H 0.28 12.83 8.30 -92.71 -0.77 12.07 16 50 H 0.21 5.89 7.31 -2.91 -0.02 5.86 16 Total: -1.00 -67.60 400.59 2.89 -64.72 By element: Atomic # 1 Polarization: 32.72 SS G_CDS: 0.95 Total: 33.68 kcal Atomic # 6 Polarization: -24.78 SS G_CDS: 8.02 Total: -16.75 kcal Atomic # 7 Polarization: -98.81 SS G_CDS: -7.27 Total: -106.08 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -0.85 Total: -16.40 kcal Atomic # 14 Polarization: 38.82 SS G_CDS: 2.03 Total: 40.85 kcal Total: -67.60 2.89 -64.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239201738.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.646 kcal (2) G-P(sol) polarization free energy of solvation -67.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds