Wall clock time and date at job start Wed Apr 1 2020 03:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.47249 * 2 1 4 4 C 1.36944 * 119.99913 * 264.29353 * 3 2 1 5 5 H 1.07997 * 120.00238 * 188.63890 * 4 3 2 6 6 C 1.38814 * 119.99699 * 8.63287 * 4 3 2 7 7 N 1.31614 * 120.00258 * 24.60502 * 6 4 3 8 8 Si 1.86808 * 119.99596 * 204.60664 * 6 4 3 9 9 H 1.48500 * 109.47156 * 85.02922 * 8 6 4 10 10 H 1.48504 * 109.46554 * 205.02556 * 8 6 4 11 11 H 1.48499 * 109.47085 * 325.02418 * 8 6 4 12 12 C 1.46500 * 120.00153 * 84.28959 * 3 2 1 13 13 C 1.53004 * 109.46914 * 269.99957 * 12 3 2 14 14 C 1.52998 * 109.46845 * 179.97438 * 13 12 3 15 15 N 1.46499 * 109.47021 * 179.97438 * 14 13 12 16 16 C 1.34780 * 120.00150 * 180.02562 * 15 14 13 17 17 O 1.21285 * 119.99542 * 0.02562 * 16 15 14 18 18 C 1.50697 * 120.00147 * 180.02562 * 16 15 14 19 19 C 1.50701 * 109.47121 * 180.02562 * 18 16 15 20 20 N 1.30244 * 126.10833 * 89.97428 * 19 18 16 21 21 N 1.39864 * 110.08739 * 180.02562 * 20 19 18 22 22 C 1.46501 * 125.46297 * 179.97438 * 21 20 19 23 23 C 1.37042 * 109.07940 * 359.97438 * 21 20 19 24 24 C 1.39282 * 133.85273 * 180.02562 * 23 21 20 25 25 C 1.36586 * 119.85270 * 179.97438 * 24 23 21 26 26 C 1.38971 * 120.81447 * 359.97438 * 25 24 23 27 27 C 1.36461 * 120.62798 * 0.02562 * 26 25 24 28 28 C 1.39948 * 119.63763 * 0.27328 * 27 26 25 29 29 H 1.09002 * 109.46853 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46783 * 299.99885 * 1 2 3 31 31 H 1.08990 * 109.47003 * 60.00263 * 1 2 3 32 32 H 1.08998 * 109.47214 * 239.99764 * 2 1 3 33 33 H 1.09005 * 109.47467 * 119.99612 * 2 1 3 34 34 H 0.97002 * 120.00225 * 179.97438 * 7 6 4 35 35 H 1.09004 * 109.47160 * 150.00506 * 12 3 2 36 36 H 1.08994 * 109.47043 * 30.00395 * 12 3 2 37 37 H 1.09004 * 109.46758 * 60.00303 * 13 12 3 38 38 H 1.08992 * 109.47111 * 300.00070 * 13 12 3 39 39 H 1.09004 * 109.46896 * 60.00753 * 14 13 12 40 40 H 1.08994 * 109.47376 * 300.00599 * 14 13 12 41 41 H 0.97006 * 120.00159 * 0.02562 * 15 14 13 42 42 H 1.08998 * 109.47128 * 59.99762 * 18 16 15 43 43 H 1.09004 * 109.47123 * 300.00053 * 18 16 15 44 44 H 1.08998 * 109.46987 * 270.02605 * 22 21 20 45 45 H 1.08997 * 109.46881 * 30.02496 * 22 21 20 46 46 H 1.09006 * 109.47185 * 150.02299 * 22 21 20 47 47 H 1.08003 * 120.07367 * 359.97438 * 24 23 21 48 48 H 1.08006 * 119.59309 * 179.97438 * 25 24 23 49 49 H 1.08000 * 119.68351 * 180.02562 * 26 25 24 50 50 H 1.08005 * 120.18125 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3578 1.9875 -1.1801 5 1 2.8470 2.9502 -1.1715 6 6 2.0731 1.3644 -2.3874 7 7 1.0959 0.4857 -2.4602 8 14 3.0770 1.7730 -3.9089 9 1 4.3046 0.9377 -3.9310 10 1 2.2688 1.4974 -5.1239 11 1 3.4556 3.2087 -3.8812 12 6 2.1435 2.1139 1.2624 13 6 0.8338 2.8475 1.5583 14 6 0.9644 3.6122 2.8770 15 7 -0.2894 4.3151 3.1601 16 6 -0.4073 5.0596 4.2774 17 8 0.5249 5.1480 5.0482 18 6 -1.6972 5.7822 4.5688 19 6 -1.5682 6.5365 5.8671 20 7 -1.1491 7.7620 6.0043 21 7 -1.1631 8.1261 7.3547 22 6 -0.7579 9.4291 7.8879 23 6 -1.6166 7.0686 8.0991 24 6 -1.8320 6.8689 9.4606 25 6 -2.3053 5.6672 9.9049 26 6 -2.5770 4.6356 9.0141 27 6 -2.3755 4.8025 7.6748 28 6 -1.8853 6.0226 7.1954 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 0.5137 -0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 0.8967 0.0506 -3.3040 35 1 2.9553 2.8372 1.1838 36 1 2.3580 1.4134 2.0694 37 1 0.0221 2.1242 1.6369 38 1 0.6195 3.5480 0.7513 39 1 1.7761 4.3354 2.7988 40 1 1.1786 2.9113 3.6838 41 1 -1.0349 4.2447 2.5434 42 1 -2.5090 5.0590 4.6474 43 1 -1.9116 6.4827 3.7617 44 1 0.3065 9.4108 8.1218 45 1 -0.9535 10.2024 7.1451 46 1 -1.3253 9.6434 8.7936 47 1 -1.6253 7.6625 10.1634 48 1 -2.4704 5.5167 10.9616 49 1 -2.9510 3.6930 9.3854 50 1 -2.5887 3.9959 6.9890 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265114969.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:49 Heat of formation + Delta-G solvation = 75.954828 kcal Electronic energy + Delta-G solvation = -28968.040940 eV Core-core repulsion = 24997.517949 eV Total energy + Delta-G solvation = -3970.522991 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.54899 -39.51021 -37.44595 -36.56332 -34.93048 -34.29530 -32.16328 -30.85119 -30.64924 -30.12437 -29.87465 -28.72406 -26.10681 -24.98864 -23.37038 -23.11227 -22.12781 -21.11031 -20.94822 -20.12659 -19.57974 -17.32073 -17.20317 -17.03142 -16.76558 -15.78256 -15.63957 -15.56714 -15.43894 -14.83224 -14.53295 -14.32348 -14.14073 -13.78055 -13.56057 -13.36011 -13.22849 -13.10663 -12.91480 -12.64917 -12.37330 -12.09893 -11.89354 -11.83920 -11.61380 -11.39492 -11.30842 -11.26092 -10.88076 -10.85174 -10.70362 -10.38917 -10.30900 -10.24500 -9.84624 -9.72603 -9.55514 -9.32287 -8.91242 -8.88348 -8.33975 -8.07545 -6.87628 -5.75153 -3.05882 0.71783 1.28254 2.09182 2.20022 2.67382 3.30837 3.40844 3.48323 3.49165 3.60462 4.05995 4.22042 4.36455 4.52040 4.67992 4.73119 4.86034 4.88391 4.94175 5.09867 5.11166 5.13920 5.25815 5.29237 5.35628 5.37213 5.53272 5.55745 5.74881 5.81832 5.92030 6.08685 6.13641 6.22002 6.25017 6.28289 6.43354 6.57957 6.58506 6.64671 6.77846 6.80872 6.89866 6.95112 7.12897 7.19916 7.42690 7.58345 7.68935 7.79312 8.11105 8.27810 8.38682 9.26520 9.89736 10.34666 11.28777 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.021028 B = 0.001803 C = 0.001714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.211489 B =15526.236384 C =16332.491869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.166 3.834 3 N -0.597 5.597 4 C -0.247 4.247 5 H 0.073 0.927 6 C -0.005 4.005 7 N -0.897 5.897 8 Si 0.896 3.104 9 H -0.289 1.289 10 H -0.294 1.294 11 H -0.282 1.282 12 C 0.156 3.844 13 C -0.154 4.154 14 C 0.120 3.880 15 N -0.725 5.725 16 C 0.514 3.486 17 O -0.534 6.534 18 C -0.064 4.064 19 C 0.122 3.878 20 N -0.240 5.240 21 N -0.409 5.409 22 C 0.112 3.888 23 C 0.128 3.872 24 C -0.143 4.143 25 C -0.071 4.071 26 C -0.162 4.162 27 C -0.036 4.036 28 C -0.164 4.164 29 H 0.017 0.983 30 H 0.013 0.987 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.002 0.998 34 H 0.251 0.749 35 H 0.046 0.954 36 H 0.039 0.961 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.402 0.598 42 H 0.117 0.883 43 H 0.115 0.885 44 H 0.069 0.931 45 H 0.087 0.913 46 H 0.083 0.917 47 H 0.123 0.877 48 H 0.128 0.872 49 H 0.126 0.874 50 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.719 12.045 22.946 28.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.041 3.959 3 N -0.318 5.318 4 C -0.376 4.376 5 H 0.091 0.909 6 C -0.202 4.202 7 N -0.543 5.543 8 Si 0.726 3.274 9 H -0.217 1.217 10 H -0.220 1.220 11 H -0.208 1.208 12 C 0.028 3.972 13 C -0.195 4.195 14 C -0.003 4.003 15 N -0.376 5.376 16 C 0.298 3.702 17 O -0.411 6.411 18 C -0.106 4.106 19 C -0.056 4.056 20 N -0.052 5.052 21 N -0.197 5.197 22 C -0.029 4.029 23 C 0.014 3.986 24 C -0.165 4.165 25 C -0.092 4.092 26 C -0.182 4.182 27 C -0.056 4.056 28 C -0.172 4.172 29 H 0.037 0.963 30 H 0.032 0.968 31 H 0.108 0.892 32 H 0.105 0.895 33 H 0.020 0.980 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.236 0.764 42 H 0.135 0.865 43 H 0.133 0.867 44 H 0.088 0.912 45 H 0.106 0.894 46 H 0.101 0.899 47 H 0.141 0.859 48 H 0.146 0.854 49 H 0.144 0.856 50 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -9.556 13.257 22.800 28.051 hybrid contribution -0.217 -0.331 -0.688 0.794 sum -9.773 12.926 22.111 27.413 Atomic orbital electron populations 1.22413 0.99382 0.98122 1.01000 1.20801 0.92462 0.84516 0.98146 1.44261 1.75765 1.10228 1.01591 1.19287 1.31127 1.03566 0.83590 0.90910 1.24715 0.98035 1.00108 0.97292 1.70147 1.27351 1.32019 1.24827 0.86388 0.80367 0.77821 0.82801 1.21666 1.22034 1.20815 1.20671 0.93693 0.94162 0.88720 1.22713 1.02838 0.99702 0.94242 1.21508 0.85167 0.95309 0.98342 1.46116 1.17704 1.50046 1.23770 1.20245 0.89098 0.79344 0.81472 1.90739 1.40620 1.62283 1.47429 1.20066 0.97833 0.99305 0.93416 1.22615 0.98015 0.91392 0.93594 1.76530 1.17900 1.15054 0.95766 1.48051 1.57546 1.11763 1.02328 1.21730 1.00821 0.80961 0.99431 1.18817 0.97835 0.88388 0.93599 1.19780 1.06415 0.99187 0.91162 1.20706 0.96460 0.92220 0.99790 1.20653 1.04842 0.99737 0.92940 1.20369 0.94955 0.94585 0.95722 1.19691 1.09665 0.95930 0.91874 0.96350 0.96817 0.89166 0.89527 0.97993 0.93874 0.93577 0.94228 0.91557 0.91429 0.91910 0.91959 0.76422 0.86494 0.86708 0.91238 0.89430 0.89877 0.85940 0.85434 0.85574 0.85567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.34 9.58 37.16 0.36 -2.99 16 2 C 0.17 3.93 5.64 -4.04 -0.02 3.90 16 3 N -0.60 -14.35 2.54 -173.23 -0.44 -14.78 16 4 C -0.25 -6.52 9.70 -15.06 -0.15 -6.67 16 5 H 0.07 1.91 7.93 -52.49 -0.42 1.49 16 6 C 0.00 -0.12 4.91 -17.43 -0.09 -0.21 16 7 N -0.90 -24.60 8.54 55.49 0.47 -24.13 16 8 Si 0.90 21.39 29.62 -169.99 -5.03 16.35 16 9 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 10 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 C 0.16 3.06 5.71 -4.04 -0.02 3.04 16 13 C -0.15 -2.61 5.53 -26.73 -0.15 -2.75 16 14 C 0.12 1.79 5.67 -4.04 -0.02 1.76 16 15 N -0.72 -9.11 5.56 -60.30 -0.33 -9.44 16 16 C 0.51 7.00 7.82 -10.99 -0.09 6.92 16 17 O -0.53 -9.71 16.03 5.55 0.09 -9.62 16 18 C -0.06 -0.65 6.30 -29.04 -0.18 -0.83 16 19 C 0.12 1.58 5.93 -80.19 -0.48 1.10 16 20 N -0.24 -3.35 12.40 34.84 0.43 -2.92 16 21 N -0.41 -4.90 4.05 -65.47 -0.27 -5.17 16 22 C 0.11 0.82 11.40 59.85 0.68 1.50 16 23 C 0.13 1.52 6.87 -84.17 -0.58 0.94 16 24 C -0.14 -1.31 9.97 -39.79 -0.40 -1.70 16 25 C -0.07 -0.57 9.96 -39.91 -0.40 -0.97 16 26 C -0.16 -1.40 9.97 -39.95 -0.40 -1.79 16 27 C -0.04 -0.37 10.07 -39.58 -0.40 -0.77 16 28 C -0.16 -2.04 6.33 -105.21 -0.67 -2.71 16 29 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.01 0.27 5.98 -51.92 -0.31 -0.04 16 31 H 0.09 2.29 6.28 -51.93 -0.33 1.96 16 32 H 0.09 2.30 5.87 -51.93 -0.31 1.99 16 33 H 0.00 0.04 7.97 -51.93 -0.41 -0.37 16 34 H 0.25 6.76 8.31 -40.82 -0.34 6.42 16 35 H 0.05 0.90 8.03 -51.93 -0.42 0.48 16 36 H 0.04 0.73 7.95 -51.93 -0.41 0.31 16 37 H 0.07 1.15 5.93 -51.93 -0.31 0.84 16 38 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.40 4.03 8.47 -40.82 -0.35 3.68 16 42 H 0.12 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.11 0.94 8.14 -51.93 -0.42 0.51 16 44 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.12 0.80 8.06 -52.48 -0.42 0.37 16 48 H 0.13 0.65 8.06 -52.48 -0.42 0.23 16 49 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 50 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 LS Contribution 409.64 15.07 6.17 6.17 Total: -1.00 -34.27 409.64 -9.78 -44.05 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -7.89 Total: 1.71 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: -2.99 Total: -2.22 kcal Atomic # 7 Polarization: -56.31 SS G_CDS: -0.13 Total: -56.44 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.09 Total: -9.62 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.35 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -34.27 -9.78 -44.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265114969.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.004 kcal (2) G-P(sol) polarization free energy of solvation -34.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds