Wall clock time and date at job start Wed Apr 1 2020 03:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.47249 * 2 1 4 4 C 1.36944 * 119.99913 * 264.29353 * 3 2 1 5 5 H 1.07997 * 120.00238 * 188.63890 * 4 3 2 6 6 C 1.38814 * 119.99699 * 8.63287 * 4 3 2 7 7 N 1.31614 * 120.00258 * 24.60502 * 6 4 3 8 8 Si 1.86808 * 119.99596 * 204.60664 * 6 4 3 9 9 H 1.48500 * 109.47156 * 85.02922 * 8 6 4 10 10 H 1.48504 * 109.46554 * 205.02556 * 8 6 4 11 11 H 1.48499 * 109.47085 * 325.02418 * 8 6 4 12 12 C 1.46500 * 120.00153 * 84.28959 * 3 2 1 13 13 C 1.53004 * 109.46914 * 269.99957 * 12 3 2 14 14 C 1.52998 * 109.46845 * 179.97438 * 13 12 3 15 15 N 1.46499 * 109.47021 * 179.97438 * 14 13 12 16 16 C 1.34780 * 120.00150 * 180.02562 * 15 14 13 17 17 O 1.21285 * 119.99542 * 0.02562 * 16 15 14 18 18 C 1.50697 * 120.00147 * 180.02562 * 16 15 14 19 19 C 1.50701 * 109.47121 * 180.02562 * 18 16 15 20 20 N 1.30244 * 126.10833 * 89.97428 * 19 18 16 21 21 N 1.39864 * 110.08739 * 180.02562 * 20 19 18 22 22 C 1.46501 * 125.46297 * 179.97438 * 21 20 19 23 23 C 1.37042 * 109.07940 * 359.97438 * 21 20 19 24 24 C 1.39282 * 133.85273 * 180.02562 * 23 21 20 25 25 C 1.36586 * 119.85270 * 179.97438 * 24 23 21 26 26 C 1.38971 * 120.81447 * 359.97438 * 25 24 23 27 27 C 1.36461 * 120.62798 * 0.02562 * 26 25 24 28 28 C 1.39948 * 119.63763 * 0.27328 * 27 26 25 29 29 H 1.09002 * 109.46853 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46783 * 299.99885 * 1 2 3 31 31 H 1.08990 * 109.47003 * 60.00263 * 1 2 3 32 32 H 1.08998 * 109.47214 * 239.99764 * 2 1 3 33 33 H 1.09005 * 109.47467 * 119.99612 * 2 1 3 34 34 H 0.97002 * 120.00225 * 179.97438 * 7 6 4 35 35 H 1.09004 * 109.47160 * 150.00506 * 12 3 2 36 36 H 1.08994 * 109.47043 * 30.00395 * 12 3 2 37 37 H 1.09004 * 109.46758 * 60.00303 * 13 12 3 38 38 H 1.08992 * 109.47111 * 300.00070 * 13 12 3 39 39 H 1.09004 * 109.46896 * 60.00753 * 14 13 12 40 40 H 1.08994 * 109.47376 * 300.00599 * 14 13 12 41 41 H 0.97006 * 120.00159 * 0.02562 * 15 14 13 42 42 H 1.08998 * 109.47128 * 59.99762 * 18 16 15 43 43 H 1.09004 * 109.47123 * 300.00053 * 18 16 15 44 44 H 1.08998 * 109.46987 * 270.02605 * 22 21 20 45 45 H 1.08997 * 109.46881 * 30.02496 * 22 21 20 46 46 H 1.09006 * 109.47185 * 150.02299 * 22 21 20 47 47 H 1.08003 * 120.07367 * 359.97438 * 24 23 21 48 48 H 1.08006 * 119.59309 * 179.97438 * 25 24 23 49 49 H 1.08000 * 119.68351 * 180.02562 * 26 25 24 50 50 H 1.08005 * 120.18125 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3578 1.9875 -1.1801 5 1 2.8470 2.9502 -1.1715 6 6 2.0731 1.3644 -2.3874 7 7 1.0959 0.4857 -2.4602 8 14 3.0770 1.7730 -3.9089 9 1 4.3046 0.9377 -3.9310 10 1 2.2688 1.4974 -5.1239 11 1 3.4556 3.2087 -3.8812 12 6 2.1435 2.1139 1.2624 13 6 0.8338 2.8475 1.5583 14 6 0.9644 3.6122 2.8770 15 7 -0.2894 4.3151 3.1601 16 6 -0.4073 5.0596 4.2774 17 8 0.5249 5.1480 5.0482 18 6 -1.6972 5.7822 4.5688 19 6 -1.5682 6.5365 5.8671 20 7 -1.1491 7.7620 6.0043 21 7 -1.1631 8.1261 7.3547 22 6 -0.7579 9.4291 7.8879 23 6 -1.6166 7.0686 8.0991 24 6 -1.8320 6.8689 9.4606 25 6 -2.3053 5.6672 9.9049 26 6 -2.5770 4.6356 9.0141 27 6 -2.3755 4.8025 7.6748 28 6 -1.8853 6.0226 7.1954 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 0.5137 -0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 0.8967 0.0506 -3.3040 35 1 2.9553 2.8372 1.1838 36 1 2.3580 1.4134 2.0694 37 1 0.0221 2.1242 1.6369 38 1 0.6195 3.5480 0.7513 39 1 1.7761 4.3354 2.7988 40 1 1.1786 2.9113 3.6838 41 1 -1.0349 4.2447 2.5434 42 1 -2.5090 5.0590 4.6474 43 1 -1.9116 6.4827 3.7617 44 1 0.3065 9.4108 8.1218 45 1 -0.9535 10.2024 7.1451 46 1 -1.3253 9.6434 8.7936 47 1 -1.6253 7.6625 10.1634 48 1 -2.4704 5.5167 10.9616 49 1 -2.9510 3.6930 9.3854 50 1 -2.5887 3.9959 6.9890 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265114969.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:48 Heat of formation + Delta-G solvation = 55.224490 kcal Electronic energy + Delta-G solvation = -28968.939875 eV Core-core repulsion = 24997.517949 eV Total energy + Delta-G solvation = -3971.421926 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.31536 -40.62255 -38.28902 -38.11674 -36.27556 -35.10807 -33.78478 -32.31276 -31.38375 -31.22325 -30.77642 -30.28481 -27.17358 -26.33514 -24.96472 -23.89635 -22.89701 -22.61021 -22.14613 -21.65445 -20.51598 -18.68922 -18.11238 -18.01257 -17.90676 -17.10148 -16.75530 -16.54163 -16.38524 -16.12203 -15.82881 -15.41322 -15.12210 -14.95022 -14.77392 -14.63755 -14.38548 -14.13397 -13.84099 -13.68916 -13.56099 -13.36473 -13.17521 -13.01720 -12.87033 -12.72895 -12.62724 -12.57055 -12.52834 -12.13062 -12.07943 -11.96290 -11.69461 -11.64503 -11.33946 -11.16443 -11.13120 -10.79641 -10.31020 -10.07422 -9.63774 -8.81486 -8.78681 -7.77187 -5.07978 -0.00834 0.57339 1.31228 1.45634 1.49224 1.53413 1.58598 1.62224 2.31259 2.57432 2.88178 3.31302 3.32078 3.48534 3.68256 3.69901 3.88673 4.11351 4.14502 4.17336 4.30953 4.33353 4.36864 4.44854 4.47689 4.51107 4.56963 4.62838 4.65398 4.68971 4.80230 4.85641 4.94014 4.95751 5.08808 5.09065 5.24317 5.30184 5.37423 5.39960 5.46156 5.53312 5.58346 5.61972 5.66448 5.85904 5.92451 6.13257 6.22420 6.40669 6.56911 6.60660 7.24743 7.26449 7.98326 8.38033 9.24491 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.021028 B = 0.001803 C = 0.001714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.211489 B =15526.236384 C =16332.491869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.166 3.834 3 N -0.612 5.612 4 C -0.254 4.254 5 H 0.070 0.930 6 C -0.051 4.051 7 N -0.914 5.914 8 Si 0.951 3.049 9 H -0.293 1.293 10 H -0.298 1.298 11 H -0.277 1.277 12 C 0.150 3.850 13 C -0.131 4.131 14 C 0.133 3.867 15 N -0.715 5.715 16 C 0.517 3.483 17 O -0.584 6.584 18 C -0.057 4.057 19 C 0.106 3.894 20 N -0.278 5.278 21 N -0.418 5.418 22 C 0.103 3.897 23 C 0.105 3.895 24 C -0.150 4.150 25 C -0.069 4.069 26 C -0.163 4.163 27 C -0.053 4.053 28 C -0.194 4.194 29 H 0.030 0.970 30 H 0.032 0.968 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.021 0.979 34 H 0.245 0.755 35 H 0.044 0.956 36 H 0.055 0.945 37 H 0.067 0.933 38 H 0.052 0.948 39 H 0.052 0.948 40 H 0.062 0.938 41 H 0.416 0.584 42 H 0.152 0.848 43 H 0.135 0.865 44 H 0.071 0.929 45 H 0.092 0.908 46 H 0.110 0.890 47 H 0.147 0.853 48 H 0.161 0.839 49 H 0.152 0.848 50 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.859 12.173 24.951 30.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.041 3.959 3 N -0.334 5.334 4 C -0.383 4.383 5 H 0.087 0.913 6 C -0.246 4.246 7 N -0.561 5.561 8 Si 0.781 3.219 9 H -0.220 1.220 10 H -0.225 1.225 11 H -0.203 1.203 12 C 0.023 3.977 13 C -0.172 4.172 14 C 0.008 3.992 15 N -0.367 5.367 16 C 0.303 3.697 17 O -0.464 6.464 18 C -0.098 4.098 19 C -0.071 4.071 20 N -0.091 5.091 21 N -0.207 5.207 22 C -0.037 4.037 23 C -0.010 4.010 24 C -0.172 4.172 25 C -0.089 4.089 26 C -0.182 4.182 27 C -0.074 4.074 28 C -0.202 4.202 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.040 0.960 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.081 0.919 41 H 0.253 0.747 42 H 0.170 0.830 43 H 0.153 0.847 44 H 0.090 0.910 45 H 0.110 0.890 46 H 0.129 0.871 47 H 0.165 0.835 48 H 0.179 0.821 49 H 0.169 0.831 50 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -10.718 13.405 24.807 30.165 hybrid contribution 0.158 -0.373 -1.177 1.245 sum -10.560 13.032 23.630 28.978 Atomic orbital electron populations 1.22184 0.98310 0.98701 1.00276 1.20709 0.93325 0.84433 0.97454 1.44403 1.76120 1.10661 1.02216 1.19474 1.30696 1.03450 0.84716 0.91260 1.25305 0.98965 1.00835 0.99472 1.70296 1.28119 1.32910 1.24798 0.85520 0.78737 0.77631 0.80008 1.22024 1.22539 1.20260 1.20826 0.94952 0.94479 0.87443 1.22338 1.01065 0.99114 0.94674 1.21193 0.85962 0.94956 0.97045 1.45954 1.17373 1.49432 1.23933 1.20782 0.89632 0.78660 0.80621 1.90718 1.42589 1.63998 1.49058 1.20163 0.96619 0.99936 0.93114 1.23025 0.97867 0.91431 0.94798 1.76408 1.19151 1.16082 0.97504 1.48369 1.57573 1.12941 1.01799 1.22022 1.01438 0.79619 1.00602 1.19283 0.98476 0.88468 0.94765 1.20168 1.06122 1.00487 0.90438 1.21165 0.94864 0.91432 1.01437 1.21060 1.03737 1.00948 0.92444 1.20651 0.95432 0.94349 0.96929 1.20049 1.10979 0.97169 0.91991 0.95112 0.94889 0.92337 0.92748 0.96035 0.94534 0.93754 0.92636 0.91493 0.92953 0.93006 0.91941 0.74682 0.83019 0.84744 0.91035 0.88957 0.87137 0.83543 0.82137 0.83073 0.84329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.90 9.58 71.98 0.69 -5.21 16 2 C 0.17 7.76 5.64 86.38 0.49 8.24 16 3 N -0.61 -29.10 2.54 -701.98 -1.78 -30.88 16 4 C -0.25 -13.41 9.70 84.03 0.82 -12.59 16 5 H 0.07 3.63 7.93 -2.91 -0.02 3.61 16 6 C -0.05 -2.74 4.91 84.86 0.42 -2.32 16 7 N -0.91 -50.68 8.54 21.65 0.18 -50.50 16 8 Si 0.95 44.37 29.62 68.60 2.03 46.40 16 9 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 10 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 11 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 12 C 0.15 5.73 5.71 86.38 0.49 6.22 16 13 C -0.13 -4.28 5.53 30.59 0.17 -4.11 16 14 C 0.13 3.80 5.67 86.38 0.49 4.29 16 15 N -0.71 -16.95 5.56 -463.06 -2.57 -19.52 16 16 C 0.52 13.66 7.82 87.66 0.69 14.34 16 17 O -0.58 -21.37 16.03 -3.05 -0.05 -21.42 16 18 C -0.06 -1.09 6.30 29.10 0.18 -0.90 16 19 C 0.11 2.74 5.93 44.79 0.27 3.01 16 20 N -0.28 -7.91 12.40 -43.70 -0.54 -8.45 16 21 N -0.42 -10.03 4.05 -361.03 -1.46 -11.50 16 22 C 0.10 1.46 11.40 127.77 1.46 2.92 16 23 C 0.10 2.43 6.87 39.21 0.27 2.70 16 24 C -0.15 -2.46 9.97 22.13 0.22 -2.24 16 25 C -0.07 -0.91 9.96 22.06 0.22 -0.69 16 26 C -0.16 -2.42 9.97 22.03 0.22 -2.20 16 27 C -0.05 -1.03 10.07 22.27 0.22 -0.80 16 28 C -0.19 -4.77 6.33 -20.24 -0.13 -4.90 16 29 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.03 1.27 5.98 -2.38 -0.01 1.25 16 31 H 0.06 2.95 6.28 -2.39 -0.02 2.94 16 32 H 0.05 2.90 5.87 -2.39 -0.01 2.89 16 33 H 0.02 0.91 7.97 -2.38 -0.02 0.89 16 34 H 0.25 13.40 8.31 -92.71 -0.77 12.63 16 35 H 0.04 1.70 8.03 -2.39 -0.02 1.68 16 36 H 0.06 1.94 7.95 -2.39 -0.02 1.92 16 37 H 0.07 2.19 5.93 -2.39 -0.01 2.17 16 38 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.42 7.49 8.47 -92.70 -0.79 6.70 16 42 H 0.15 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.13 1.99 8.14 -2.38 -0.02 1.97 16 44 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 46 H 0.11 0.88 8.14 -2.38 -0.02 0.86 16 47 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 48 H 0.16 1.00 8.06 -2.91 -0.02 0.98 16 49 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 50 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 Total: -1.00 -75.76 409.64 3.15 -72.61 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: 0.16 Total: 17.49 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: 7.18 Total: 5.76 kcal Atomic # 7 Polarization: -114.67 SS G_CDS: -6.17 Total: -120.84 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: -0.05 Total: -21.42 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -75.76 3.15 -72.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265114969.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.836 kcal (2) G-P(sol) polarization free energy of solvation -75.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds