Wall clock time and date at job start Wed Apr 1 2020 03:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47147 * 2 1 4 4 N 1.46489 * 109.47078 * 239.99661 * 2 1 3 5 5 C 1.36936 * 120.00102 * 85.00139 * 4 2 1 6 6 H 1.08000 * 120.00215 * 0.02562 * 5 4 2 7 7 C 1.38808 * 120.00310 * 179.97438 * 5 4 2 8 8 N 1.31622 * 120.00294 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00263 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47476 * 59.99973 * 9 7 5 11 11 H 1.48503 * 109.47075 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.46924 * 299.99910 * 9 7 5 13 13 C 1.53007 * 109.46961 * 119.99743 * 2 1 3 14 14 C 1.53042 * 109.45748 * 300.00106 * 13 2 1 15 15 C 1.53198 * 109.30990 * 181.38745 * 14 13 2 16 16 N 1.46935 * 108.77252 * 305.36373 * 15 14 13 17 17 C 1.34773 * 120.62810 * 233.58505 * 16 15 14 18 18 O 1.21561 * 120.00124 * 5.79605 * 17 16 15 19 19 C 1.47832 * 119.99791 * 185.79613 * 17 16 15 20 20 C 1.39967 * 120.93807 * 48.87027 * 19 17 16 21 21 N 1.32136 * 118.92126 * 179.72779 * 20 19 17 22 22 C 1.31886 * 120.96306 * 0.24600 * 21 20 19 23 23 N 1.31850 * 122.10177 * 359.97438 * 22 21 20 24 24 C 1.32159 * 120.96403 * 0.02562 * 23 22 21 25 25 C 1.50705 * 120.53855 * 179.97438 * 24 23 22 26 26 C 1.52997 * 117.49483 * 2.24958 * 25 24 23 27 27 C 1.52998 * 117.49683 * 293.59294 * 25 24 23 28 28 C 1.46926 * 118.73650 * 53.85960 * 16 15 14 29 29 C 1.53039 * 109.45566 * 60.06872 * 13 2 1 30 30 H 1.08996 * 109.47358 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47371 * 300.00117 * 1 2 3 32 32 H 1.09000 * 109.47276 * 60.00014 * 1 2 3 33 33 H 0.97001 * 120.00283 * 264.99915 * 4 2 1 34 34 H 0.96993 * 120.00684 * 179.97438 * 8 7 5 35 35 H 1.08995 * 109.44448 * 180.02562 * 13 2 1 36 36 H 1.08998 * 109.50148 * 61.43809 * 14 13 2 37 37 H 1.08998 * 109.49636 * 301.33152 * 14 13 2 38 38 H 1.08998 * 109.58474 * 185.57715 * 15 14 13 39 39 H 1.09003 * 109.70392 * 65.21475 * 15 14 13 40 40 H 1.07999 * 120.53946 * 359.97438 * 20 19 17 41 41 H 1.08007 * 118.94406 * 180.02562 * 22 21 20 42 42 H 1.09000 * 115.55270 * 147.91172 * 25 24 23 43 43 H 1.09003 * 117.50189 * 359.97438 * 26 25 24 44 44 H 1.09004 * 117.50212 * 145.02017 * 26 25 24 45 45 H 1.09004 * 117.49784 * 214.97743 * 27 25 24 46 46 H 1.09001 * 117.49995 * 359.96658 * 27 25 24 47 47 H 1.08999 * 109.58514 * 65.93240 * 28 16 15 48 48 H 1.09004 * 109.57982 * 186.34930 * 28 16 15 49 49 H 1.08994 * 109.49933 * 298.55987 * 29 13 2 50 50 H 1.08992 * 109.50196 * 58.63456 * 29 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1960 5 6 2.1491 -0.0076 -2.3757 6 1 1.8927 1.0404 -2.4242 7 6 2.6123 -0.6618 -3.5089 8 7 2.9263 -1.9387 -3.4496 9 14 2.7914 0.2701 -5.1179 10 1 3.7465 1.3926 -4.9362 11 1 3.3002 -0.6484 -6.1680 12 1 1.4692 0.8069 -5.5288 13 6 2.0400 -0.7212 1.2493 14 6 1.5296 0.0005 2.4987 15 6 2.0705 -0.7038 3.7470 16 7 1.7084 -2.1263 3.6817 17 6 1.0558 -2.7163 4.7026 18 8 0.6681 -2.0498 5.6423 19 6 0.8115 -4.1742 4.6796 20 6 1.8458 -5.0727 4.3936 21 7 1.5841 -6.3679 4.3890 22 6 0.3701 -6.8157 4.6438 23 7 -0.6337 -6.0045 4.9136 24 6 -0.4613 -4.6945 4.9392 25 6 -1.6155 -3.7761 5.2482 26 6 -2.9629 -4.4214 5.5782 27 6 -2.7606 -3.7154 4.2352 28 6 2.0768 -2.8947 2.4847 29 6 1.5310 -2.1645 1.2482 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 2.2490 -1.6318 -1.1525 34 1 3.2496 -2.3960 -4.2415 35 1 3.1299 -0.7206 1.2492 36 1 0.4399 -0.0215 2.5120 37 1 1.8731 1.0349 2.4870 38 1 1.6316 -0.2556 4.6384 39 1 3.1553 -0.6042 3.7842 40 1 2.8425 -4.7135 4.1840 41 1 0.1927 -7.8811 4.6318 42 1 -1.3569 -2.8555 5.7713 43 1 -3.0146 -5.5102 5.5715 44 1 -3.5909 -3.9252 6.3181 45 1 -3.2555 -2.7548 4.0921 46 1 -2.6788 -4.3392 3.3452 47 1 3.1622 -2.9700 2.4186 48 1 1.6421 -3.8926 2.5431 49 1 0.4414 -2.1661 1.2733 50 1 1.8750 -2.6709 0.3464 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267493667.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:30 Heat of formation + Delta-G solvation = 34.194690 kcal Electronic energy + Delta-G solvation = -30927.859258 eV Core-core repulsion = 26955.525412 eV Total energy + Delta-G solvation = -3972.333846 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.58247 -40.99497 -39.29960 -38.27739 -36.87638 -34.87788 -34.44029 -33.60450 -32.17391 -31.88643 -29.87717 -27.17561 -26.58678 -26.25213 -25.23490 -24.34998 -23.32803 -22.93263 -22.30976 -21.13055 -19.90704 -19.31042 -19.03737 -18.29854 -17.99236 -17.26780 -16.70830 -16.45245 -16.32898 -16.01758 -15.58678 -15.46129 -15.38414 -15.17997 -15.12607 -14.73436 -14.39679 -14.24160 -14.17677 -13.67962 -13.17154 -13.14962 -12.99063 -12.90166 -12.79936 -12.74627 -12.64966 -12.54443 -12.35342 -12.19566 -12.01012 -11.77746 -11.60612 -11.56714 -11.40850 -11.21457 -11.11736 -10.93701 -10.85801 -10.46558 -10.43468 -9.73750 -8.95463 -7.91163 -5.17449 -0.58694 -0.17253 1.43058 1.48156 1.49732 1.55702 1.83638 2.44528 2.58265 2.77977 2.92163 3.03776 3.19773 3.25661 3.42300 3.71823 3.73366 3.80618 3.89656 3.91680 3.95923 4.04609 4.10679 4.22918 4.27780 4.32925 4.36615 4.52332 4.61124 4.65560 4.70624 4.71351 4.76528 4.85853 4.88407 4.93282 4.98380 5.06154 5.07857 5.13036 5.17967 5.24529 5.25752 5.32848 5.41759 5.51779 5.58078 5.71411 5.73322 6.21295 6.32437 6.87872 6.91910 7.38954 8.17795 8.40287 9.32040 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014123 B = 0.002724 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.102571 B =10276.425168 C =10619.559155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.171 3.829 3 H 0.041 0.959 4 N -0.735 5.735 5 C -0.235 4.235 6 H 0.071 0.929 7 C -0.074 4.074 8 N -0.968 5.968 9 Si 0.965 3.035 10 H -0.279 1.279 11 H -0.297 1.297 12 H -0.282 1.282 13 C -0.079 4.079 14 C -0.118 4.118 15 C 0.114 3.886 16 N -0.593 5.593 17 C 0.578 3.422 18 O -0.560 6.560 19 C -0.245 4.245 20 C 0.189 3.811 21 N -0.534 5.534 22 C 0.314 3.686 23 N -0.529 5.529 24 C 0.248 3.752 25 C -0.154 4.154 26 C -0.138 4.138 27 C -0.150 4.150 28 C 0.110 3.890 29 C -0.120 4.120 30 H 0.042 0.958 31 H 0.068 0.932 32 H 0.028 0.972 33 H 0.375 0.625 34 H 0.249 0.751 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.193 0.807 41 H 0.234 0.766 42 H 0.129 0.871 43 H 0.108 0.892 44 H 0.116 0.884 45 H 0.114 0.886 46 H 0.090 0.910 47 H 0.094 0.906 48 H 0.082 0.918 49 H 0.061 0.939 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.175 -5.547 20.586 22.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.063 3.937 3 H 0.059 0.941 4 N -0.376 5.376 5 C -0.368 4.368 6 H 0.089 0.911 7 C -0.267 4.267 8 N -0.619 5.619 9 Si 0.795 3.205 10 H -0.205 1.205 11 H -0.224 1.224 12 H -0.208 1.208 13 C -0.099 4.099 14 C -0.157 4.157 15 C -0.007 4.007 16 N -0.324 5.324 17 C 0.365 3.635 18 O -0.440 6.440 19 C -0.253 4.253 20 C 0.022 3.978 21 N -0.248 5.248 22 C 0.028 3.972 23 N -0.243 5.243 24 C 0.102 3.898 25 C -0.173 4.173 26 C -0.175 4.175 27 C -0.188 4.188 28 C -0.012 4.012 29 C -0.159 4.159 30 H 0.061 0.939 31 H 0.087 0.913 32 H 0.047 0.953 33 H 0.209 0.791 34 H 0.058 0.942 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.106 0.894 40 H 0.210 0.790 41 H 0.250 0.750 42 H 0.146 0.854 43 H 0.126 0.874 44 H 0.135 0.865 45 H 0.132 0.868 46 H 0.108 0.892 47 H 0.112 0.888 48 H 0.100 0.900 49 H 0.079 0.921 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.515 -6.039 20.932 22.739 hybrid contribution 0.501 0.853 -1.437 1.744 sum -6.014 -5.186 19.495 21.050 Atomic orbital electron populations 1.22379 0.98470 1.00565 1.00153 1.20426 0.92358 0.94938 0.85937 0.94070 1.42675 1.78346 1.10499 1.06122 1.19557 1.34525 0.94055 0.88619 0.91111 1.25431 1.03309 0.96851 1.01071 1.69777 1.52818 1.10018 1.29297 0.85333 0.77779 0.77422 0.79975 1.20537 1.22371 1.20849 1.21252 1.00085 0.94515 0.94013 1.21928 1.01271 0.99963 0.92512 1.21762 1.00991 0.78778 0.99163 1.48081 1.55844 1.11592 1.16875 1.17870 0.77193 0.86241 0.82204 1.90731 1.52150 1.65209 1.35864 1.21469 0.97627 0.96021 1.10175 1.23833 0.99517 0.87858 0.86582 1.68567 1.23933 1.15782 1.16498 1.25899 0.82680 1.02233 0.86432 1.68290 1.35934 1.03482 1.16610 1.21035 0.92183 0.90549 0.86061 1.21255 0.87613 1.00305 1.08113 1.23046 0.94880 1.01225 0.98318 1.23026 0.98466 1.03525 0.93768 1.22060 1.01457 0.94633 0.83080 1.21913 1.00748 0.96121 0.97072 0.93941 0.91341 0.95324 0.79149 0.94189 0.91276 0.91508 0.89135 0.89093 0.89401 0.78985 0.74978 0.85370 0.87376 0.86542 0.86806 0.89160 0.88810 0.89972 0.92072 0.91966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.26 8.79 71.98 0.63 -4.63 16 2 C 0.17 6.21 2.72 45.00 0.12 6.33 16 3 H 0.04 1.54 8.08 -2.38 -0.02 1.52 16 4 N -0.74 -34.96 5.04 -322.95 -1.63 -36.59 16 5 C -0.24 -12.70 9.93 84.03 0.83 -11.86 16 6 H 0.07 3.70 7.83 -2.91 -0.02 3.68 16 7 C -0.07 -4.18 5.50 84.86 0.47 -3.71 16 8 N -0.97 -57.73 13.06 21.65 0.28 -57.45 16 9 Si 0.97 45.53 29.55 68.60 2.03 47.56 16 10 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 11 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 12 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 13 C -0.08 -2.21 2.14 -10.76 -0.02 -2.23 16 14 C -0.12 -2.58 4.96 30.67 0.15 -2.42 16 15 C 0.11 2.29 6.44 86.36 0.56 2.84 16 16 N -0.59 -12.73 2.97 -821.44 -2.44 -15.16 16 17 C 0.58 14.07 6.81 86.78 0.59 14.66 16 18 O -0.56 -16.45 14.51 -3.91 -0.06 -16.51 16 19 C -0.25 -5.52 4.82 -19.91 -0.10 -5.61 16 20 C 0.19 3.65 8.89 85.07 0.76 4.41 16 21 N -0.53 -10.54 10.42 -198.97 -2.07 -12.61 16 22 C 0.31 5.56 12.27 180.84 2.22 7.78 16 23 N -0.53 -11.09 9.45 -187.05 -1.77 -12.86 16 24 C 0.25 5.68 6.53 42.92 0.28 5.96 16 25 C -0.15 -3.30 5.46 -11.54 -0.06 -3.36 16 26 C -0.14 -2.30 10.04 30.62 0.31 -1.99 16 27 C -0.15 -2.73 10.24 30.62 0.31 -2.42 16 28 C 0.11 2.31 5.37 86.51 0.46 2.77 16 29 C -0.12 -3.27 4.83 30.82 0.15 -3.12 16 30 H 0.04 1.46 6.46 -2.39 -0.02 1.44 16 31 H 0.07 1.88 6.46 -2.38 -0.02 1.86 16 32 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.38 18.91 6.04 -92.71 -0.56 18.35 16 34 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 35 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.07 1.54 6.51 -2.39 -0.02 1.52 16 37 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.09 1.91 7.00 -2.39 -0.02 1.89 16 39 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.19 2.80 7.43 -2.91 -0.02 2.78 16 41 H 0.23 2.27 8.06 -2.91 -0.02 2.25 16 42 H 0.13 3.13 6.21 -2.39 -0.01 3.12 16 43 H 0.11 1.84 7.58 -2.39 -0.02 1.82 16 44 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.11 1.82 8.14 -2.38 -0.02 1.80 16 46 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 47 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 48 H 0.08 1.67 5.15 -2.39 -0.01 1.65 16 49 H 0.06 1.74 6.51 -2.39 -0.02 1.73 16 50 H 0.06 2.04 6.46 -2.39 -0.02 2.02 16 Total: -1.00 -67.99 391.28 2.42 -65.58 By element: Atomic # 1 Polarization: 34.25 SS G_CDS: 0.41 Total: 34.66 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: 7.66 Total: 3.39 kcal Atomic # 7 Polarization: -127.05 SS G_CDS: -7.62 Total: -134.68 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: -0.06 Total: -16.51 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -67.99 2.42 -65.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267493667.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.770 kcal (2) G-P(sol) polarization free energy of solvation -67.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds