Wall clock time and date at job start Wed Apr 1 2020 03:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47193 * 2 1 4 4 C 1.53008 * 109.47071 * 119.99711 * 2 1 3 5 5 H 1.08995 * 109.47141 * 300.00289 * 4 2 1 6 6 C 1.53007 * 109.46803 * 60.00202 * 4 2 1 7 7 N 1.46498 * 109.46858 * 175.00312 * 6 4 2 8 8 C 1.34777 * 119.99834 * 180.02562 * 7 6 4 9 9 O 1.21284 * 119.99881 * 359.97438 * 8 7 6 10 10 C 1.50698 * 120.00001 * 179.97438 * 8 7 6 11 11 H 1.08994 * 109.47407 * 59.99422 * 10 8 7 12 12 C 1.53004 * 109.47043 * 299.99874 * 10 8 7 13 13 N 1.46504 * 109.47140 * 180.02562 * 10 8 7 14 14 C 1.36031 * 126.34759 * 60.01992 * 13 10 8 15 15 N 1.30111 * 110.09613 * 179.74019 * 14 13 10 16 16 C 1.35786 * 109.64697 * 0.22644 * 15 14 13 17 17 C 1.39739 * 133.60953 * 179.97438 * 16 15 14 18 18 C 1.36601 * 119.88746 * 180.02562 * 17 16 15 19 19 C 1.38772 * 120.67248 * 0.02562 * 18 17 16 20 20 C 1.37858 * 120.45136 * 359.97438 * 19 18 17 21 21 C 1.38052 * 126.34487 * 240.14634 * 13 10 8 22 22 N 1.46496 * 109.47258 * 180.02562 * 4 2 1 23 23 C 1.36933 * 119.99859 * 85.00021 * 22 4 2 24 24 H 1.07997 * 120.00295 * 0.02562 * 23 22 4 25 25 C 1.38819 * 119.99878 * 179.97438 * 23 22 4 26 26 N 1.31622 * 119.99983 * 0.02562 * 25 23 22 27 27 Si 1.86794 * 120.00087 * 179.97438 * 25 23 22 28 28 H 1.48499 * 109.47042 * 60.00308 * 27 25 23 29 29 H 1.48497 * 109.47230 * 180.02562 * 27 25 23 30 30 H 1.48502 * 109.47523 * 300.00376 * 27 25 23 31 31 H 1.08995 * 109.47374 * 300.00142 * 1 2 3 32 32 H 1.09009 * 109.46988 * 60.00239 * 1 2 3 33 33 H 1.09009 * 109.47272 * 179.97438 * 1 2 3 34 34 H 1.08995 * 109.47374 * 239.99858 * 2 1 3 35 35 H 1.09004 * 109.47374 * 179.97438 * 3 2 1 36 36 H 1.09001 * 109.47100 * 299.99456 * 3 2 1 37 37 H 1.08995 * 109.47076 * 59.99676 * 3 2 1 38 38 H 1.09002 * 109.47092 * 54.99768 * 6 4 2 39 39 H 1.08999 * 109.46669 * 295.00131 * 6 4 2 40 40 H 0.96996 * 120.00004 * 359.97438 * 7 6 4 41 41 H 1.09000 * 109.47400 * 59.99977 * 12 10 8 42 42 H 1.08997 * 109.46970 * 180.02562 * 12 10 8 43 43 H 1.09008 * 109.47062 * 299.99663 * 12 10 8 44 44 H 1.08002 * 124.95583 * 0.02562 * 14 13 10 45 45 H 1.07995 * 120.05265 * 359.97438 * 17 16 15 46 46 H 1.07997 * 119.66062 * 179.97438 * 18 17 16 47 47 H 1.08003 * 119.77977 * 179.97438 * 19 18 17 48 48 H 1.07997 * 120.15641 * 179.97438 * 20 19 18 49 49 H 0.97004 * 119.99781 * 264.99998 * 22 4 2 50 50 H 0.96993 * 119.99741 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6766 -0.2074 2.1393 6 6 1.5299 -2.1638 1.2493 7 7 2.1140 -2.8882 2.3808 8 6 1.8059 -4.1847 2.5822 9 8 1.0447 -4.7515 1.8270 10 6 2.4071 -4.9301 3.7458 11 1 2.1188 -4.4431 4.6773 12 6 3.9319 -4.9278 3.6199 13 7 1.9196 -6.3117 3.7452 14 6 2.0884 -7.2257 2.7520 15 7 1.5323 -8.3542 3.0837 16 6 0.9638 -8.2395 4.3115 17 6 0.2520 -9.1203 5.1302 18 6 -0.2053 -8.6999 6.3468 19 6 0.0290 -7.4030 6.7815 20 6 0.7289 -6.5168 5.9908 21 6 1.2017 -6.9264 4.7514 22 7 3.5049 -0.7207 1.2497 23 6 4.1890 0.3543 1.7512 24 1 3.6487 1.2015 2.1468 25 6 5.5772 0.3545 1.7520 26 7 6.2358 -0.6783 1.2703 27 14 6.5106 1.8212 2.4353 28 1 6.1510 2.0152 3.8630 29 1 7.9706 1.5757 2.3211 30 1 6.1520 3.0389 1.6648 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8899 35 1 3.1300 1.4425 0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.6766 1.9563 0.8899 38 1 1.8183 -2.6511 0.3179 39 1 0.4436 -2.1650 1.3388 40 1 2.7230 -2.4350 2.9845 41 1 4.2950 -3.9001 3.6201 42 1 4.3668 -5.4673 4.4612 43 1 4.2203 -5.4149 2.6883 44 1 2.6121 -7.0429 1.8252 45 1 0.0629 -10.1314 4.8011 46 1 -0.7554 -9.3835 6.9763 47 1 -0.3394 -7.0858 7.7459 48 1 0.9082 -5.5085 6.3337 49 1 3.9902 -1.4819 0.8947 50 1 7.2058 -0.6779 1.2705 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271915544.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:32 Heat of formation + Delta-G solvation = 42.579780 kcal Electronic energy + Delta-G solvation = -30322.489812 eV Core-core repulsion = 26350.519570 eV Total energy + Delta-G solvation = -3971.970242 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.26756 -39.75379 -37.59224 -37.17380 -34.92320 -34.11939 -33.23266 -31.63494 -30.49373 -29.54654 -29.26636 -28.04904 -26.22349 -24.99626 -23.77643 -23.28251 -22.27717 -22.08074 -21.08578 -19.96818 -19.25937 -17.82607 -17.52408 -17.13721 -16.64055 -15.85903 -15.65502 -15.52652 -15.22872 -14.83928 -14.30345 -14.23862 -14.02220 -13.85125 -13.65373 -13.58963 -13.41415 -13.12126 -12.70380 -12.57822 -12.33381 -12.13295 -12.12041 -11.99383 -11.72714 -11.71126 -11.43920 -11.17107 -11.05161 -10.91624 -10.76187 -10.65412 -10.39452 -10.21641 -10.08772 -9.96624 -9.74721 -9.64363 -9.03681 -8.86593 -8.40082 -8.15732 -7.15684 -5.93569 -3.23208 0.91828 1.44564 2.34329 2.54381 2.79518 3.30762 3.33084 3.37551 3.38898 3.83848 4.23823 4.38537 4.44030 4.50802 4.61077 4.69383 4.88144 4.94778 5.21061 5.25487 5.32217 5.33802 5.37927 5.41333 5.45951 5.50657 5.53529 5.64171 5.67318 5.76637 5.87655 5.90725 6.05521 6.07117 6.13954 6.27692 6.32920 6.35861 6.41515 6.42193 6.47150 6.52002 6.52952 6.74013 6.79399 6.96431 7.04850 7.20751 7.55589 7.61727 7.87671 8.21464 8.24033 9.35969 9.89094 10.25353 11.27858 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013490 B = 0.002668 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.056887 B =10492.813167 C =11530.716012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.109 4.109 3 C -0.139 4.139 4 C 0.170 3.830 5 H 0.054 0.946 6 C 0.114 3.886 7 N -0.702 5.702 8 C 0.499 3.501 9 O -0.536 6.536 10 C 0.122 3.878 11 H 0.122 0.878 12 C -0.161 4.161 13 N -0.473 5.473 14 C 0.296 3.704 15 N -0.505 5.505 16 C 0.049 3.951 17 C -0.067 4.067 18 C -0.132 4.132 19 C -0.108 4.108 20 C -0.109 4.109 21 C 0.047 3.953 22 N -0.721 5.721 23 C -0.240 4.240 24 H 0.072 0.928 25 C -0.008 4.008 26 N -0.929 5.929 27 Si 0.902 3.098 28 H -0.286 1.286 29 H -0.292 1.292 30 H -0.286 1.286 31 H 0.049 0.951 32 H 0.046 0.954 33 H 0.050 0.950 34 H 0.063 0.937 35 H 0.087 0.913 36 H 0.032 0.968 37 H 0.040 0.960 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.412 0.588 41 H 0.096 0.904 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.208 0.792 45 H 0.126 0.874 46 H 0.126 0.874 47 H 0.127 0.873 48 H 0.120 0.880 49 H 0.385 0.615 50 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.830 -8.988 8.145 15.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.131 4.131 3 C -0.197 4.197 4 C 0.060 3.940 5 H 0.072 0.928 6 C -0.011 4.011 7 N -0.354 5.354 8 C 0.282 3.718 9 O -0.413 6.413 10 C 0.014 3.986 11 H 0.140 0.860 12 C -0.219 4.219 13 N -0.162 5.162 14 C 0.010 3.990 15 N -0.224 5.224 16 C -0.069 4.069 17 C -0.086 4.086 18 C -0.152 4.152 19 C -0.128 4.128 20 C -0.130 4.130 21 C -0.061 4.061 22 N -0.363 5.363 23 C -0.370 4.370 24 H 0.090 0.910 25 C -0.205 4.205 26 N -0.576 5.576 27 Si 0.733 3.267 28 H -0.213 1.213 29 H -0.218 1.218 30 H -0.212 1.212 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.105 0.895 36 H 0.051 0.949 37 H 0.059 0.941 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.249 0.751 41 H 0.115 0.885 42 H 0.093 0.907 43 H 0.092 0.908 44 H 0.225 0.775 45 H 0.144 0.856 46 H 0.144 0.856 47 H 0.145 0.855 48 H 0.138 0.862 49 H 0.219 0.781 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -10.252 -9.833 7.195 15.924 hybrid contribution 1.077 1.797 0.749 2.225 sum -9.175 -8.036 7.944 14.555 Atomic orbital electron populations 1.21948 0.96843 1.00941 1.01021 1.21726 0.93544 0.97856 0.99965 1.21819 1.04220 0.94558 0.99064 1.20551 0.86460 0.90879 0.96154 0.92800 1.21811 0.97379 0.93321 0.88540 1.45918 1.48165 1.10206 1.31065 1.20435 0.82080 0.82918 0.86345 1.90752 1.35916 1.67751 1.46909 1.21288 0.96766 0.80353 1.00153 0.86039 1.22185 0.90195 1.05473 1.04028 1.45099 1.44983 1.10606 1.15496 1.25186 0.97116 0.83088 0.93612 1.70519 1.15980 1.23191 1.12661 1.19090 1.02249 0.92471 0.93110 1.19994 0.96879 0.98725 0.93025 1.20598 1.01958 0.96383 0.96278 1.20827 0.99050 0.93448 0.99429 1.19961 1.01116 1.00178 0.91730 1.18897 1.00195 0.94492 0.92536 1.42451 0.98645 1.21269 1.73893 1.19136 0.88748 0.96478 1.32675 0.90973 1.24719 0.96452 0.97684 1.01649 1.69637 1.07048 1.29828 1.51116 0.86351 0.79124 0.82405 0.78776 1.21289 1.21772 1.21244 0.93174 0.93484 0.93101 0.91860 0.89462 0.94936 0.94054 0.91607 0.91417 0.75111 0.88543 0.90664 0.90841 0.77546 0.85569 0.85594 0.85474 0.86221 0.78112 0.93373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 8.84 37.15 0.33 -1.65 16 2 C -0.11 -1.73 2.69 -90.62 -0.24 -1.97 16 3 C -0.14 -2.36 8.26 37.16 0.31 -2.05 16 4 C 0.17 2.83 2.18 -67.92 -0.15 2.68 16 5 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 6 C 0.11 1.73 4.73 -4.04 -0.02 1.71 16 7 N -0.70 -9.93 5.28 -60.29 -0.32 -10.25 16 8 C 0.50 7.17 7.12 -10.99 -0.08 7.09 16 9 O -0.54 -9.54 15.48 5.55 0.09 -9.45 16 10 C 0.12 1.42 3.40 -69.08 -0.23 1.18 16 11 H 0.12 1.17 7.63 -51.93 -0.40 0.78 16 12 C -0.16 -1.69 9.14 37.16 0.34 -1.35 16 13 N -0.47 -6.34 2.45 -109.93 -0.27 -6.61 16 14 C 0.30 4.22 10.70 -89.79 -0.96 3.26 16 15 N -0.50 -7.99 11.27 -12.05 -0.14 -8.13 16 16 C 0.05 0.73 7.23 -84.70 -0.61 0.11 16 17 C -0.07 -0.81 10.05 -39.61 -0.40 -1.20 16 18 C -0.13 -1.30 9.96 -39.98 -0.40 -1.69 16 19 C -0.11 -1.05 10.03 -39.52 -0.40 -1.44 16 20 C -0.11 -1.23 9.89 -39.50 -0.39 -1.62 16 21 C 0.05 0.66 6.87 -83.99 -0.58 0.08 16 22 N -0.72 -14.86 4.44 -53.42 -0.24 -15.10 16 23 C -0.24 -5.61 7.56 -15.06 -0.11 -5.73 16 24 H 0.07 1.67 7.40 -52.49 -0.39 1.28 16 25 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 26 N -0.93 -24.95 13.06 55.49 0.72 -24.22 16 27 Si 0.90 20.38 29.55 -169.99 -5.02 15.36 16 28 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 29 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 30 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 33 H 0.05 0.64 6.55 -51.92 -0.34 0.30 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.09 1.77 6.01 -51.93 -0.31 1.45 16 36 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.07 0.99 6.71 -51.93 -0.35 0.64 16 40 H 0.41 5.74 7.56 -40.82 -0.31 5.44 16 41 H 0.10 1.06 7.56 -51.93 -0.39 0.66 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.07 0.80 7.95 -51.92 -0.41 0.39 16 44 H 0.21 2.51 8.06 -52.49 -0.42 2.09 16 45 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 46 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 47 H 0.13 0.88 8.06 -52.48 -0.42 0.45 16 48 H 0.12 1.11 7.76 -52.49 -0.41 0.70 16 49 H 0.38 8.72 7.80 -40.82 -0.32 8.40 16 50 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 405.54 15.07 6.11 6.11 Total: -1.00 -29.83 405.54 -10.58 -40.41 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: -7.83 Total: 14.79 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: -3.69 Total: -2.92 kcal Atomic # 7 Polarization: -64.07 SS G_CDS: -0.24 Total: -64.31 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.09 Total: -9.45 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -29.83 -10.58 -40.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271915544.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.990 kcal (2) G-P(sol) polarization free energy of solvation -29.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds