Wall clock time and date at job start Wed Apr 1 2020 03:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47193 * 2 1 4 4 C 1.53008 * 109.47071 * 119.99711 * 2 1 3 5 5 H 1.08995 * 109.47141 * 300.00289 * 4 2 1 6 6 C 1.53007 * 109.46803 * 60.00202 * 4 2 1 7 7 N 1.46498 * 109.46858 * 175.00312 * 6 4 2 8 8 C 1.34777 * 119.99834 * 180.02562 * 7 6 4 9 9 O 1.21284 * 119.99881 * 359.97438 * 8 7 6 10 10 C 1.50698 * 120.00001 * 179.97438 * 8 7 6 11 11 H 1.08994 * 109.47407 * 59.99422 * 10 8 7 12 12 C 1.53004 * 109.47043 * 299.99874 * 10 8 7 13 13 N 1.46504 * 109.47140 * 180.02562 * 10 8 7 14 14 C 1.36031 * 126.34759 * 60.01992 * 13 10 8 15 15 N 1.30111 * 110.09613 * 179.74019 * 14 13 10 16 16 C 1.35786 * 109.64697 * 0.22644 * 15 14 13 17 17 C 1.39739 * 133.60953 * 179.97438 * 16 15 14 18 18 C 1.36601 * 119.88746 * 180.02562 * 17 16 15 19 19 C 1.38772 * 120.67248 * 0.02562 * 18 17 16 20 20 C 1.37858 * 120.45136 * 359.97438 * 19 18 17 21 21 C 1.38052 * 126.34487 * 240.14634 * 13 10 8 22 22 N 1.46496 * 109.47258 * 180.02562 * 4 2 1 23 23 C 1.36933 * 119.99859 * 85.00021 * 22 4 2 24 24 H 1.07997 * 120.00295 * 0.02562 * 23 22 4 25 25 C 1.38819 * 119.99878 * 179.97438 * 23 22 4 26 26 N 1.31622 * 119.99983 * 0.02562 * 25 23 22 27 27 Si 1.86794 * 120.00087 * 179.97438 * 25 23 22 28 28 H 1.48499 * 109.47042 * 60.00308 * 27 25 23 29 29 H 1.48497 * 109.47230 * 180.02562 * 27 25 23 30 30 H 1.48502 * 109.47523 * 300.00376 * 27 25 23 31 31 H 1.08995 * 109.47374 * 300.00142 * 1 2 3 32 32 H 1.09009 * 109.46988 * 60.00239 * 1 2 3 33 33 H 1.09009 * 109.47272 * 179.97438 * 1 2 3 34 34 H 1.08995 * 109.47374 * 239.99858 * 2 1 3 35 35 H 1.09004 * 109.47374 * 179.97438 * 3 2 1 36 36 H 1.09001 * 109.47100 * 299.99456 * 3 2 1 37 37 H 1.08995 * 109.47076 * 59.99676 * 3 2 1 38 38 H 1.09002 * 109.47092 * 54.99768 * 6 4 2 39 39 H 1.08999 * 109.46669 * 295.00131 * 6 4 2 40 40 H 0.96996 * 120.00004 * 359.97438 * 7 6 4 41 41 H 1.09000 * 109.47400 * 59.99977 * 12 10 8 42 42 H 1.08997 * 109.46970 * 180.02562 * 12 10 8 43 43 H 1.09008 * 109.47062 * 299.99663 * 12 10 8 44 44 H 1.08002 * 124.95583 * 0.02562 * 14 13 10 45 45 H 1.07995 * 120.05265 * 359.97438 * 17 16 15 46 46 H 1.07997 * 119.66062 * 179.97438 * 18 17 16 47 47 H 1.08003 * 119.77977 * 179.97438 * 19 18 17 48 48 H 1.07997 * 120.15641 * 179.97438 * 20 19 18 49 49 H 0.97004 * 119.99781 * 264.99998 * 22 4 2 50 50 H 0.96993 * 119.99741 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6766 -0.2074 2.1393 6 6 1.5299 -2.1638 1.2493 7 7 2.1140 -2.8882 2.3808 8 6 1.8059 -4.1847 2.5822 9 8 1.0447 -4.7515 1.8270 10 6 2.4071 -4.9301 3.7458 11 1 2.1188 -4.4431 4.6773 12 6 3.9319 -4.9278 3.6199 13 7 1.9196 -6.3117 3.7452 14 6 2.0884 -7.2257 2.7520 15 7 1.5323 -8.3542 3.0837 16 6 0.9638 -8.2395 4.3115 17 6 0.2520 -9.1203 5.1302 18 6 -0.2053 -8.6999 6.3468 19 6 0.0290 -7.4030 6.7815 20 6 0.7289 -6.5168 5.9908 21 6 1.2017 -6.9264 4.7514 22 7 3.5049 -0.7207 1.2497 23 6 4.1890 0.3543 1.7512 24 1 3.6487 1.2015 2.1468 25 6 5.5772 0.3545 1.7520 26 7 6.2358 -0.6783 1.2703 27 14 6.5106 1.8212 2.4353 28 1 6.1510 2.0152 3.8630 29 1 7.9706 1.5757 2.3211 30 1 6.1520 3.0389 1.6648 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8899 35 1 3.1300 1.4425 0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.6766 1.9563 0.8899 38 1 1.8183 -2.6511 0.3179 39 1 0.4436 -2.1650 1.3388 40 1 2.7230 -2.4350 2.9845 41 1 4.2950 -3.9001 3.6201 42 1 4.3668 -5.4673 4.4612 43 1 4.2203 -5.4149 2.6883 44 1 2.6121 -7.0429 1.8252 45 1 0.0629 -10.1314 4.8011 46 1 -0.7554 -9.3835 6.9763 47 1 -0.3394 -7.0858 7.7459 48 1 0.9082 -5.5085 6.3337 49 1 3.9902 -1.4819 0.8947 50 1 7.2058 -0.6779 1.2705 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271915544.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:31 Heat of formation + Delta-G solvation = 26.080031 kcal Electronic energy + Delta-G solvation = -30323.205295 eV Core-core repulsion = 26350.519570 eV Total energy + Delta-G solvation = -3972.685724 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.23751 -40.93854 -38.87238 -38.15189 -35.95650 -35.38612 -34.90572 -32.61532 -32.06862 -30.50146 -30.20517 -29.37584 -27.48525 -26.17413 -25.29349 -24.19035 -23.55213 -23.04543 -22.23755 -21.14492 -20.50661 -19.25380 -18.54493 -18.42469 -17.69863 -16.96354 -16.83582 -16.68415 -16.40445 -16.07759 -15.73376 -15.31542 -15.21409 -14.97226 -14.88591 -14.81091 -14.56944 -14.39906 -13.87964 -13.63235 -13.47272 -13.43622 -12.99542 -12.90615 -12.86110 -12.80019 -12.71551 -12.60148 -12.47331 -12.30552 -12.25606 -12.02602 -11.77823 -11.67412 -11.44834 -11.28406 -11.00129 -10.92349 -10.76204 -10.11106 -9.31696 -9.07719 -8.93773 -7.85494 -5.11968 0.02548 0.56898 1.34209 1.42389 1.51994 1.54455 1.58373 1.80234 2.21738 2.61340 2.94303 3.31989 3.39306 3.48510 3.57713 3.68923 3.70856 3.86355 3.92843 4.07029 4.21347 4.28856 4.30956 4.44305 4.45163 4.50347 4.51435 4.58962 4.63240 4.68834 4.76637 4.87331 4.91748 4.97176 5.04378 5.06404 5.14908 5.21879 5.25200 5.29509 5.46514 5.47584 5.59482 5.60901 5.62247 5.66031 5.76644 5.98523 6.06410 6.34420 6.44997 6.86441 7.05746 7.43611 8.13747 8.39526 9.36540 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013490 B = 0.002668 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.056887 B =10492.813167 C =11530.716012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.107 4.107 3 C -0.135 4.135 4 C 0.174 3.826 5 H 0.059 0.941 6 C 0.123 3.877 7 N -0.697 5.697 8 C 0.502 3.498 9 O -0.572 6.572 10 C 0.129 3.871 11 H 0.148 0.852 12 C -0.153 4.153 13 N -0.472 5.472 14 C 0.280 3.720 15 N -0.535 5.535 16 C 0.011 3.989 17 C -0.086 4.086 18 C -0.123 4.123 19 C -0.099 4.099 20 C -0.120 4.120 21 C 0.029 3.971 22 N -0.725 5.725 23 C -0.214 4.214 24 H 0.078 0.922 25 C -0.066 4.066 26 N -0.963 5.963 27 Si 0.953 3.047 28 H -0.278 1.278 29 H -0.306 1.306 30 H -0.287 1.287 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.049 0.951 35 H 0.050 0.950 36 H 0.048 0.952 37 H 0.047 0.953 38 H 0.051 0.949 39 H 0.080 0.920 40 H 0.415 0.585 41 H 0.093 0.907 42 H 0.088 0.912 43 H 0.064 0.936 44 H 0.215 0.785 45 H 0.133 0.867 46 H 0.160 0.840 47 H 0.163 0.837 48 H 0.141 0.859 49 H 0.374 0.626 50 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.819 -8.269 10.437 17.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.129 4.129 3 C -0.192 4.192 4 C 0.065 3.935 5 H 0.077 0.923 6 C -0.001 4.001 7 N -0.348 5.348 8 C 0.286 3.714 9 O -0.451 6.451 10 C 0.023 3.977 11 H 0.166 0.834 12 C -0.211 4.211 13 N -0.162 5.162 14 C -0.006 4.006 15 N -0.255 5.255 16 C -0.106 4.106 17 C -0.106 4.106 18 C -0.143 4.143 19 C -0.118 4.118 20 C -0.141 4.141 21 C -0.079 4.079 22 N -0.365 5.365 23 C -0.346 4.346 24 H 0.096 0.904 25 C -0.259 4.259 26 N -0.614 5.614 27 Si 0.784 3.216 28 H -0.204 1.204 29 H -0.233 1.233 30 H -0.214 1.214 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.098 0.902 40 H 0.252 0.748 41 H 0.112 0.888 42 H 0.107 0.893 43 H 0.083 0.917 44 H 0.232 0.768 45 H 0.151 0.849 46 H 0.177 0.823 47 H 0.181 0.819 48 H 0.159 0.841 49 H 0.206 0.794 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -12.285 -9.083 9.511 17.997 hybrid contribution 1.545 1.556 0.064 2.194 sum -10.740 -7.527 9.575 16.238 Atomic orbital electron populations 1.21856 0.94163 1.01756 1.02138 1.21635 0.95732 0.96835 0.98652 1.21732 1.01716 0.95517 1.00248 1.20661 0.84093 0.92032 0.96734 0.92262 1.21649 0.97930 0.92157 0.88401 1.45860 1.47994 1.10294 1.30688 1.20856 0.81318 0.82642 0.86541 1.90739 1.37617 1.68378 1.48381 1.21345 0.96964 0.79547 0.99847 0.83444 1.22124 0.89426 1.05310 1.04225 1.45132 1.44956 1.10793 1.15286 1.25355 0.97587 0.83336 0.94285 1.70438 1.16947 1.24224 1.13845 1.19565 1.03724 0.93972 0.93352 1.20298 0.97345 0.99003 0.93910 1.21034 1.00666 0.97135 0.95427 1.21328 0.97308 0.92901 1.00309 1.20356 1.01156 1.01656 0.90920 1.19279 1.00750 0.94356 0.93508 1.42538 1.00321 1.20158 1.73482 1.19381 0.88685 0.96605 1.29926 0.90434 1.25264 0.97526 0.99561 1.03512 1.69769 1.06355 1.31508 1.53762 0.85521 0.77281 0.80194 0.78576 1.20416 1.23292 1.21363 0.92146 0.92303 0.92467 0.93215 0.93114 0.93303 0.93372 0.93059 0.90218 0.74776 0.88818 0.89337 0.91663 0.76816 0.84944 0.82270 0.81908 0.84099 0.79395 0.94466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.35 8.84 71.98 0.64 -2.72 16 2 C -0.11 -3.24 2.69 -10.79 -0.03 -3.27 16 3 C -0.13 -4.37 8.26 71.98 0.59 -3.77 16 4 C 0.17 5.57 2.18 45.00 0.10 5.67 16 5 H 0.06 1.89 8.08 -2.39 -0.02 1.87 16 6 C 0.12 3.63 4.73 86.38 0.41 4.03 16 7 N -0.70 -19.17 5.28 -463.05 -2.45 -21.62 16 8 C 0.50 14.17 7.12 87.66 0.62 14.79 16 9 O -0.57 -20.42 15.48 -3.04 -0.05 -20.47 16 10 C 0.13 2.89 3.40 44.25 0.15 3.05 16 11 H 0.15 2.51 7.63 -2.39 -0.02 2.49 16 12 C -0.15 -3.13 9.14 71.98 0.66 -2.47 16 13 N -0.47 -12.59 2.45 -501.72 -1.23 -13.82 16 14 C 0.28 8.31 10.70 180.06 1.93 10.23 16 15 N -0.53 -17.62 11.27 -192.03 -2.16 -19.79 16 16 C 0.01 0.34 7.23 39.45 0.29 0.62 16 17 C -0.09 -2.02 10.05 22.25 0.22 -1.79 16 18 C -0.12 -2.07 9.96 22.01 0.22 -1.85 16 19 C -0.10 -1.58 10.03 22.31 0.22 -1.35 16 20 C -0.12 -2.42 9.89 22.32 0.22 -2.20 16 21 C 0.03 0.79 6.87 38.86 0.27 1.05 16 22 N -0.73 -29.71 4.44 -322.93 -1.43 -31.14 16 23 C -0.21 -9.92 7.56 84.04 0.64 -9.29 16 24 H 0.08 3.48 7.40 -2.91 -0.02 3.46 16 25 C -0.07 -3.34 5.50 84.86 0.47 -2.87 16 26 N -0.96 -52.75 13.06 21.65 0.28 -52.46 16 27 Si 0.95 42.07 29.55 68.60 2.03 44.10 16 28 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 29 H -0.31 -14.12 7.11 99.48 0.71 -13.42 16 30 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 31 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 33 H 0.06 1.30 6.55 -2.38 -0.02 1.28 16 34 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.05 2.02 6.01 -2.39 -0.01 2.00 16 36 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.08 2.20 6.71 -2.39 -0.02 2.18 16 40 H 0.41 11.13 7.56 -92.71 -0.70 10.43 16 41 H 0.09 2.00 7.56 -2.39 -0.02 1.98 16 42 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.06 1.44 7.95 -2.38 -0.02 1.42 16 44 H 0.22 5.58 8.06 -2.91 -0.02 5.55 16 45 H 0.13 2.75 8.06 -2.91 -0.02 2.73 16 46 H 0.16 1.57 8.06 -2.91 -0.02 1.55 16 47 H 0.16 1.41 8.06 -2.91 -0.02 1.39 16 48 H 0.14 2.13 7.76 -2.91 -0.02 2.11 16 49 H 0.37 17.14 7.80 -92.71 -0.72 16.41 16 50 H 0.25 13.53 8.31 -92.71 -0.77 12.76 16 Total: -1.00 -65.87 405.54 2.13 -63.74 By element: Atomic # 1 Polarization: 44.06 SS G_CDS: -0.47 Total: 43.59 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: 7.61 Total: 7.87 kcal Atomic # 7 Polarization: -131.84 SS G_CDS: -6.99 Total: -138.83 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: -0.05 Total: -20.47 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Total: -65.87 2.13 -63.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271915544.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.819 kcal (2) G-P(sol) polarization free energy of solvation -65.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds