Wall clock time and date at job start Wed Apr 1 2020 02:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 115.54847 * 2 1 4 4 C 1.53070 * 117.51672 * 145.72752 * 2 1 3 5 5 C 1.52994 * 59.98606 * 107.47535 * 4 2 1 6 6 H 1.09004 * 117.49856 * 107.50342 * 5 4 2 7 7 C 1.52997 * 117.50114 * 252.49735 * 5 4 2 8 8 N 1.46900 * 109.47644 * 243.74496 * 7 5 4 9 9 C 1.46933 * 111.00300 * 189.99938 * 8 7 5 10 10 C 1.53634 * 109.64796 * 164.27322 * 9 8 7 11 11 C 1.50410 * 107.73994 * 48.73837 * 10 9 8 12 12 C 1.35814 * 123.65888 * 344.43574 * 11 10 9 13 13 N 1.34117 * 107.17333 * 179.97438 * 12 11 10 14 14 H 0.97000 * 124.97899 * 180.15142 * 13 12 11 15 15 N 1.28924 * 110.03402 * 359.81045 * 13 12 11 16 16 C 1.32293 * 110.16918 * 0.26933 * 15 13 12 17 17 C 1.47711 * 126.69672 * 179.74734 * 16 15 13 18 18 O 1.21572 * 119.99811 * 180.02562 * 17 16 15 19 19 N 1.34777 * 119.99798 * 0.02562 * 17 16 15 20 20 C 1.47061 * 136.05757 * 359.62403 * 19 17 16 21 21 C 1.53761 * 87.88712 * 152.96939 * 20 19 17 22 22 C 1.50695 * 114.08859 * 139.78105 * 21 20 19 23 23 H 1.08001 * 120.00076 * 266.55867 * 22 21 20 24 24 C 1.37874 * 120.00112 * 86.56421 * 22 21 20 25 25 N 1.31517 * 120.00073 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 120.00267 * 179.97438 * 24 22 21 27 27 H 1.48493 * 109.47128 * 89.99723 * 26 24 22 28 28 H 1.48502 * 109.46920 * 210.00054 * 26 24 22 29 29 H 1.48507 * 109.46899 * 329.99651 * 26 24 22 30 30 C 1.47062 * 136.05488 * 180.02562 * 19 17 16 31 31 C 1.47323 * 110.99678 * 65.20867 * 8 7 5 32 32 H 1.09006 * 109.46871 * 205.66513 * 1 2 3 33 33 H 1.08999 * 109.47396 * 325.66527 * 1 2 3 34 34 H 1.08996 * 109.47598 * 85.66809 * 1 2 3 35 35 H 1.09004 * 117.51103 * 359.97438 * 4 2 1 36 36 H 1.09004 * 117.49216 * 214.96416 * 4 2 1 37 37 H 1.08999 * 109.47336 * 123.74524 * 7 5 4 38 38 H 1.09000 * 109.47334 * 3.74845 * 7 5 4 39 39 H 1.08997 * 109.44091 * 44.21706 * 9 8 7 40 40 H 1.09007 * 109.44198 * 284.32359 * 9 8 7 41 41 H 1.09004 * 109.80201 * 289.18325 * 10 9 8 42 42 H 1.08995 * 109.80887 * 168.30577 * 10 9 8 43 43 H 1.09002 * 113.47133 * 267.69590 * 20 19 17 44 44 H 1.08996 * 113.46839 * 38.14476 * 20 19 17 45 45 H 1.09000 * 114.57165 * 272.66545 * 21 20 19 46 46 H 0.96998 * 120.00109 * 180.02562 * 25 24 22 47 47 H 1.09000 * 113.46760 * 321.85888 * 30 19 17 48 48 H 1.08998 * 113.46930 * 92.29864 * 30 19 17 49 49 H 1.09004 * 109.70647 * 56.16374 * 31 8 7 50 50 H 1.08995 * 109.72613 * 295.52991 * 31 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9835 0.0000 4 6 2.2372 -1.1218 0.7645 5 6 2.2364 -1.1207 -0.7655 6 1 3.1713 -0.8745 -1.2690 7 6 1.3588 -2.1556 -1.4723 8 7 2.2082 -3.0735 -2.2430 9 6 1.3979 -3.9298 -3.1200 10 6 2.2987 -4.5849 -4.1782 11 6 3.4864 -5.1740 -3.4678 12 6 3.8355 -4.8563 -2.1943 13 7 4.9333 -5.5667 -1.8958 14 1 5.4000 -5.5381 -1.0460 15 7 5.2729 -6.2983 -2.9015 16 6 4.4339 -6.1098 -3.9068 17 6 4.4854 -6.7581 -5.2330 18 8 3.6467 -6.4930 -6.0722 19 7 5.4622 -7.6436 -5.5127 20 6 6.6194 -8.2042 -4.7990 21 6 6.4863 -9.4554 -5.6828 22 6 7.8027 -10.0234 -6.1469 23 1 8.2124 -9.7268 -7.1012 24 6 8.4840 -10.9218 -5.3535 25 7 7.9853 -11.2828 -4.1913 26 14 10.1154 -11.6265 -5.9291 27 1 11.2233 -10.7545 -5.4630 28 1 10.2902 -12.9909 -5.3695 29 1 10.1294 -11.6944 -7.4126 30 6 5.8440 -8.4691 -6.6683 31 6 3.0699 -3.8693 -1.3517 32 1 -0.3633 -0.9263 0.4451 33 1 -0.3634 0.8486 0.5796 34 1 -0.3634 0.0776 -1.0247 35 1 1.6124 -1.8597 1.2678 36 1 3.1724 -0.8760 1.2675 37 1 0.6686 -1.6475 -2.1457 38 1 0.7935 -2.7199 -0.7307 39 1 0.6372 -3.3258 -3.6146 40 1 0.9147 -4.7047 -2.5248 41 1 2.6320 -3.8345 -4.8951 42 1 1.7494 -5.3719 -4.6948 43 1 7.5431 -7.6504 -4.9671 44 1 6.4276 -8.3945 -3.7431 45 1 5.8025 -10.2118 -5.2976 46 1 8.4648 -11.9146 -3.6329 47 1 4.9914 -8.8851 -7.2052 48 1 6.5633 -7.9851 -7.3289 49 1 2.4554 -4.4035 -0.6270 50 1 3.7665 -3.2126 -0.8306 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277141477.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:15 Heat of formation + Delta-G solvation = 86.863475 kcal Electronic energy + Delta-G solvation = -29733.210530 eV Core-core repulsion = 25763.160574 eV Total energy + Delta-G solvation = -3970.049956 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.88752 -40.94898 -39.85412 -38.69868 -37.96318 -34.65530 -34.06462 -32.85784 -31.27152 -30.56954 -29.34813 -27.88536 -27.30898 -26.67071 -25.23502 -24.59257 -23.56363 -22.27054 -21.85799 -20.28941 -20.16285 -19.62800 -18.89928 -18.70279 -17.74255 -17.20471 -17.02624 -16.72452 -16.51571 -16.27248 -16.03185 -15.63815 -15.10351 -14.89933 -14.65498 -14.51972 -14.27628 -14.07333 -13.99833 -13.82008 -13.62929 -13.25646 -13.19190 -13.15927 -12.79530 -12.77630 -12.62676 -12.53592 -12.30575 -12.26123 -12.17193 -11.90193 -11.73142 -11.47694 -11.04207 -10.87871 -10.71914 -10.62273 -10.52374 -10.47637 -9.73059 -9.53841 -9.30736 -8.15582 -6.27251 0.47975 1.01985 1.47738 1.48826 1.59229 1.72659 2.05472 2.32487 2.47191 2.72363 2.98024 3.13655 3.26846 3.56031 3.76706 3.88179 3.96466 4.00548 4.04904 4.22889 4.24770 4.33188 4.38382 4.40045 4.42020 4.48920 4.51843 4.57795 4.68305 4.69537 4.76378 4.84541 4.87762 4.92033 4.97075 4.99028 5.01001 5.04687 5.08033 5.09084 5.12178 5.25816 5.38222 5.43071 5.49249 5.58525 5.81377 5.94148 6.05307 6.16880 6.23346 6.74989 6.79244 6.81527 7.16419 7.42415 8.94685 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.025523 B = 0.002029 C = 0.001918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.777193 B =13798.425362 C =14593.045350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.151 4.151 3 H 0.104 0.896 4 C -0.176 4.176 5 C -0.151 4.151 6 H 0.102 0.898 7 C 0.095 3.905 8 N -0.544 5.544 9 C 0.065 3.935 10 C -0.032 4.032 11 C -0.161 4.161 12 C 0.021 3.979 13 N -0.352 5.352 14 H 0.461 0.539 15 N -0.271 5.271 16 C -0.026 4.026 17 C 0.611 3.389 18 O -0.577 6.577 19 N -0.636 5.636 20 C 0.128 3.872 21 C 0.023 3.977 22 C -0.527 4.527 23 H 0.069 0.931 24 C 0.019 3.981 25 N -0.919 5.919 26 Si 0.962 3.038 27 H -0.274 1.274 28 H -0.286 1.286 29 H -0.264 1.264 30 C 0.109 3.891 31 C 0.141 3.859 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.047 0.953 39 H 0.102 0.898 40 H 0.043 0.957 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.072 0.928 44 H 0.056 0.944 45 H 0.038 0.962 46 H 0.264 0.736 47 H 0.063 0.937 48 H 0.088 0.912 49 H 0.073 0.927 50 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.551 21.929 13.242 28.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.170 4.170 3 H 0.122 0.878 4 C -0.213 4.213 5 C -0.170 4.170 6 H 0.120 0.880 7 C -0.031 4.031 8 N -0.269 5.269 9 C -0.063 4.063 10 C -0.071 4.071 11 C -0.172 4.172 12 C -0.108 4.108 13 N -0.067 5.067 14 H 0.309 0.691 15 N -0.109 5.109 16 C -0.184 4.184 17 C 0.400 3.600 18 O -0.457 6.457 19 N -0.368 5.368 20 C 0.005 3.995 21 C 0.003 3.997 22 C -0.565 4.565 23 H 0.087 0.913 24 C -0.181 4.181 25 N -0.558 5.558 26 Si 0.787 3.213 27 H -0.200 1.200 28 H -0.212 1.212 29 H -0.188 1.188 30 C -0.013 4.013 31 C 0.012 3.988 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.116 0.884 36 H 0.114 0.886 37 H 0.107 0.893 38 H 0.065 0.935 39 H 0.120 0.880 40 H 0.061 0.939 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.090 0.910 44 H 0.075 0.925 45 H 0.057 0.943 46 H 0.073 0.927 47 H 0.082 0.918 48 H 0.106 0.894 49 H 0.090 0.910 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -12.886 21.756 12.961 28.415 hybrid contribution 0.270 -0.798 0.408 0.936 sum -12.617 20.958 13.369 27.878 Atomic orbital electron populations 1.21362 0.92306 1.02263 1.02154 1.22446 0.95893 0.94462 1.04166 0.87784 1.23275 1.02806 1.01683 0.93556 1.22312 1.01341 0.99717 0.93600 0.88007 1.21652 0.93336 0.92239 0.95908 1.61737 1.23674 1.19843 1.21661 1.22164 0.94472 0.95583 0.94072 1.19983 0.91832 0.98531 0.96752 1.20126 1.00916 1.00743 0.95376 1.21430 0.92317 1.00300 0.96785 1.42976 1.20810 1.29110 1.13812 0.69081 1.74088 1.24202 1.16403 0.96174 1.21392 0.98596 1.03954 0.94439 1.16829 0.80617 0.77117 0.85400 1.90672 1.41221 1.64672 1.49102 1.49859 1.26565 1.40351 1.20027 1.23286 0.85407 0.93245 0.97558 1.20303 0.95947 0.91069 0.92356 1.21211 1.04580 1.25821 1.04916 0.91253 1.25818 1.01346 0.96100 0.94858 1.70089 1.40144 1.33746 1.11775 0.85495 0.79471 0.77415 0.78908 1.19979 1.21169 1.18846 1.23286 0.97693 0.89820 0.90503 1.20613 0.95142 0.91596 0.91455 0.92351 0.91760 0.91929 0.88399 0.88558 0.89346 0.93497 0.88007 0.93906 0.91055 0.91242 0.91028 0.92547 0.94350 0.92701 0.91808 0.89411 0.90966 0.86892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.94 9.20 71.98 0.66 -0.27 16 2 C -0.15 -1.38 6.41 -10.77 -0.07 -1.45 16 3 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 4 C -0.18 -1.52 9.83 30.62 0.30 -1.22 16 5 C -0.15 -1.61 4.84 -10.80 -0.05 -1.66 16 6 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 7 C 0.10 1.07 4.32 86.30 0.37 1.44 16 8 N -0.54 -8.80 4.61 -898.29 -4.14 -12.94 16 9 C 0.06 1.18 5.54 86.51 0.48 1.66 16 10 C -0.03 -0.88 5.79 29.97 0.17 -0.71 16 11 C -0.16 -5.09 6.05 -20.04 -0.12 -5.21 16 12 C 0.02 0.50 7.23 41.64 0.30 0.80 16 13 N -0.35 -8.78 6.82 -48.17 -0.33 -9.11 16 14 H 0.46 7.41 8.96 -219.76 -1.97 5.44 16 15 N -0.27 -9.68 10.81 -48.75 -0.53 -10.20 16 16 C -0.03 -1.02 7.09 42.06 0.30 -0.72 16 17 C 0.61 27.66 8.08 86.75 0.70 28.36 16 18 O -0.58 -27.65 16.73 -3.94 -0.07 -27.72 16 19 N -0.64 -29.22 3.69 -861.42 -3.18 -32.39 16 20 C 0.13 6.03 7.38 83.27 0.61 6.65 16 21 C 0.02 1.14 3.80 -11.11 -0.04 1.10 16 22 C -0.53 -27.84 8.82 25.60 0.23 -27.61 16 23 H 0.07 3.51 7.81 -2.91 -0.02 3.48 16 24 C 0.02 1.01 5.46 84.65 0.46 1.47 16 25 N -0.92 -52.19 13.26 21.45 0.28 -51.90 16 26 Si 0.96 41.90 29.54 68.60 2.03 43.93 16 27 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 28 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 29 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 30 C 0.11 4.87 8.18 83.18 0.68 5.55 16 31 C 0.14 2.16 5.55 85.47 0.47 2.64 16 32 H 0.06 0.42 7.90 -2.38 -0.02 0.40 16 33 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.06 0.47 7.84 -2.39 -0.02 0.45 16 35 H 0.10 0.76 7.94 -2.38 -0.02 0.74 16 36 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.09 0.93 7.49 -2.39 -0.02 0.91 16 38 H 0.05 0.46 7.85 -2.39 -0.02 0.44 16 39 H 0.10 1.44 7.81 -2.39 -0.02 1.43 16 40 H 0.04 0.75 8.08 -2.38 -0.02 0.73 16 41 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 42 H 0.07 2.11 7.80 -2.39 -0.02 2.09 16 43 H 0.07 3.34 8.10 -2.39 -0.02 3.32 16 44 H 0.06 2.77 7.49 -2.39 -0.02 2.75 16 45 H 0.04 2.15 8.11 -2.39 -0.02 2.13 16 46 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 47 H 0.06 2.75 8.14 -2.39 -0.02 2.74 16 48 H 0.09 3.67 8.10 -2.39 -0.02 3.66 16 49 H 0.07 0.90 8.12 -2.38 -0.02 0.88 16 50 H 0.11 1.33 7.43 -2.39 -0.02 1.31 16 Total: -1.00 -69.23 404.29 -1.49 -70.72 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: -1.02 Total: 18.82 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: 5.46 Total: 10.80 kcal Atomic # 7 Polarization: -108.67 SS G_CDS: -7.89 Total: -116.55 kcal Atomic # 8 Polarization: -27.65 SS G_CDS: -0.07 Total: -27.72 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Total: -69.23 -1.49 -70.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277141477.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.586 kcal (2) G-P(sol) polarization free energy of solvation -69.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds