Wall clock time and date at job start Wed Apr 1 2020 02:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 115.54826 * 2 1 4 4 C 1.53007 * 117.49724 * 145.70890 * 2 1 3 5 5 C 1.52994 * 117.49928 * 214.32800 * 2 1 3 6 6 H 1.08998 * 117.50295 * 0.02562 * 5 2 1 7 7 C 1.53002 * 117.49659 * 145.02245 * 5 2 1 8 8 N 1.46907 * 109.47060 * 185.00129 * 7 5 2 9 9 C 1.46967 * 110.99801 * 190.00153 * 8 7 5 10 10 C 1.53394 * 109.68132 * 164.77266 * 9 8 7 11 11 N 1.46633 * 108.21948 * 49.88154 * 10 9 8 12 12 C 1.34594 * 128.38838 * 163.84244 * 11 10 9 13 13 C 1.36657 * 106.73758 * 180.38340 * 12 11 10 14 14 C 1.47320 * 126.20232 * 179.78581 * 13 12 11 15 15 O 1.21632 * 119.99779 * 359.70783 * 14 13 12 16 16 N 1.34770 * 120.00239 * 179.70918 * 14 13 12 17 17 C 1.47586 * 134.49328 * 179.97438 * 16 14 13 18 18 C 1.53950 * 86.11354 * 155.35990 * 17 16 14 19 19 C 1.50706 * 113.73627 * 137.95493 * 18 17 16 20 20 H 1.07995 * 120.00167 * 1.64697 * 19 18 17 21 21 C 1.37879 * 119.99394 * 181.92396 * 19 18 17 22 22 N 1.31514 * 120.00338 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99424 * 180.02562 * 21 19 18 24 24 H 1.48490 * 109.47405 * 60.00219 * 23 21 19 25 25 H 1.48503 * 109.46845 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47399 * 299.99813 * 23 21 19 27 27 C 1.47813 * 134.45830 * 359.86487 * 16 14 13 28 28 N 1.35960 * 107.59906 * 359.51535 * 13 12 11 29 29 C 1.29595 * 108.83998 * 0.22984 * 28 13 12 30 30 C 1.47309 * 111.00006 * 65.78875 * 8 7 5 31 31 H 1.09006 * 109.47567 * 205.66655 * 1 2 3 32 32 H 1.09001 * 109.47626 * 325.66962 * 1 2 3 33 33 H 1.09001 * 109.47423 * 85.67338 * 1 2 3 34 34 H 1.08997 * 117.49416 * 359.97438 * 4 2 1 35 35 H 1.09003 * 117.49562 * 214.98213 * 4 2 1 36 36 H 1.08997 * 109.47023 * 65.00215 * 7 5 2 37 37 H 1.08997 * 109.47544 * 304.99895 * 7 5 2 38 38 H 1.08995 * 109.43829 * 44.70679 * 9 8 7 39 39 H 1.08997 * 109.42885 * 284.83473 * 9 8 7 40 40 H 1.09000 * 109.71449 * 290.19358 * 10 9 8 41 41 H 1.09002 * 109.74631 * 169.57786 * 10 9 8 42 42 H 1.08003 * 126.63712 * 0.23986 * 12 11 10 43 43 H 1.09008 * 113.76654 * 41.06222 * 17 16 14 44 44 H 1.08991 * 113.77014 * 269.66271 * 17 16 14 45 45 H 1.09000 * 113.74485 * 269.15566 * 18 17 16 46 46 H 0.96996 * 119.99730 * 179.97438 * 22 21 19 47 47 H 1.09002 * 113.76703 * 90.37825 * 27 16 14 48 48 H 1.08998 * 113.83277 * 318.91803 * 27 16 14 49 49 H 1.08997 * 109.73577 * 54.75533 * 30 8 7 50 50 H 1.08997 * 109.74785 * 294.03838 * 30 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2364 -1.1213 0.7647 5 6 2.2364 -1.1207 -0.7653 6 1 1.6113 -1.8578 -1.2692 7 6 3.5490 -0.7754 -1.4716 8 7 4.0098 -1.9370 -2.2439 9 6 5.3769 -1.7296 -2.7419 10 6 5.9671 -3.0680 -3.2036 11 7 4.9979 -3.7134 -4.0948 12 6 5.1994 -4.7315 -4.9518 13 6 4.0016 -4.9741 -5.5633 14 6 3.7391 -6.0012 -6.5863 15 8 4.6388 -6.7275 -6.9637 16 7 2.5021 -6.1360 -7.1040 17 6 1.8943 -7.0260 -8.1123 18 6 0.5593 -6.7527 -7.3959 19 6 -0.5976 -6.5257 -8.3347 20 1 -0.4474 -6.5901 -9.4023 21 6 -1.8465 -6.2302 -7.8307 22 7 -2.0281 -6.1460 -6.5309 23 14 -3.2806 -5.9496 -8.9943 24 1 -3.5026 -7.1705 -9.8099 25 1 -4.5044 -5.6496 -8.2083 26 1 -2.9751 -4.8049 -9.8897 27 6 1.2093 -5.4529 -6.8880 28 7 3.0946 -4.0997 -5.0521 29 6 3.6848 -3.3488 -4.1763 30 6 3.0813 -2.2397 -3.3468 31 1 -0.3634 -0.9263 0.4451 32 1 -0.3634 0.8486 0.5796 33 1 -0.3634 0.0775 -1.0247 34 1 1.6111 -1.8587 1.2680 35 1 3.1715 -0.8756 1.2681 36 1 4.3021 -0.5105 -0.7295 37 1 3.3891 0.0676 -2.1438 38 1 5.9946 -1.3166 -1.9445 39 1 5.3556 -1.0339 -3.5807 40 1 6.1533 -3.7055 -2.3393 41 1 6.9001 -2.8937 -3.7396 42 1 6.1286 -5.2541 -5.1247 43 1 2.2268 -8.0617 -8.0417 44 1 1.9364 -6.6326 -9.1279 45 1 0.3311 -7.4676 -6.6054 46 1 -2.9066 -5.9377 -6.1765 47 1 1.0499 -4.5967 -7.5435 48 1 0.9959 -5.2347 -5.8416 49 1 2.9415 -1.3524 -3.9642 50 1 2.1220 -2.5626 -2.9424 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277142504.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:31 Heat of formation + Delta-G solvation = 96.796562 kcal Electronic energy + Delta-G solvation = -29838.077972 eV Core-core repulsion = 25868.458746 eV Total energy + Delta-G solvation = -3969.619226 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.29356 -39.20303 -38.78342 -37.23047 -36.57154 -34.17893 -32.51435 -30.86087 -30.21127 -28.87251 -28.78165 -26.80210 -25.46756 -24.82542 -24.68237 -22.78298 -22.26419 -21.27643 -20.56748 -19.84213 -19.23555 -18.22926 -17.17022 -16.63451 -16.50158 -16.16460 -15.69628 -15.38753 -15.30203 -14.88472 -14.52034 -14.41536 -14.29736 -14.02527 -13.77940 -13.59314 -13.36322 -13.08622 -12.78812 -12.61703 -12.41863 -12.25193 -12.15605 -11.91599 -11.86239 -11.70353 -11.37428 -11.34197 -11.08039 -10.82537 -10.71314 -10.31318 -10.28928 -10.07778 -9.97080 -9.65741 -9.55308 -9.09622 -8.90487 -8.82373 -8.43732 -8.28900 -7.58223 -6.03646 -4.08625 1.85638 2.54916 2.65731 3.11905 3.33782 3.38388 3.40923 3.54470 3.80385 4.10313 4.11704 4.16318 4.27306 4.44777 4.49697 4.56970 4.63975 4.67794 4.83921 4.96221 4.99682 5.06157 5.08988 5.10322 5.23247 5.26256 5.29662 5.36177 5.44351 5.49993 5.53355 5.56869 5.67049 5.76598 5.90530 6.03513 6.12079 6.27413 6.38288 6.42783 6.45349 6.48988 6.54398 6.66586 6.90579 6.95786 7.12427 7.22324 7.71482 7.94552 8.04943 8.33700 8.69974 8.93190 9.01455 9.56607 11.05957 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008485 B = 0.003019 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3299.088099 B = 9272.711935 C =12226.987436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.152 4.152 3 H 0.101 0.899 4 C -0.169 4.169 5 C -0.149 4.149 6 H 0.113 0.887 7 C 0.091 3.909 8 N -0.539 5.539 9 C 0.040 3.960 10 C 0.111 3.889 11 N -0.455 5.455 12 C 0.028 3.972 13 C -0.043 4.043 14 C 0.608 3.392 15 O -0.576 6.576 16 N -0.624 5.624 17 C 0.104 3.896 18 C 0.029 3.971 19 C -0.518 4.518 20 H 0.061 0.939 21 C 0.068 3.932 22 N -0.884 5.884 23 Si 0.894 3.106 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.276 1.276 27 C 0.125 3.875 28 N -0.434 5.434 29 C 0.200 3.800 30 C 0.145 3.855 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.044 0.956 38 H 0.100 0.900 39 H 0.050 0.950 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.186 0.814 43 H 0.060 0.940 44 H 0.073 0.927 45 H 0.062 0.938 46 H 0.263 0.737 47 H 0.068 0.932 48 H 0.074 0.926 49 H 0.065 0.935 50 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.411 15.393 15.243 25.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.171 4.171 3 H 0.119 0.881 4 C -0.206 4.206 5 C -0.167 4.167 6 H 0.131 0.869 7 C -0.036 4.036 8 N -0.264 5.264 9 C -0.088 4.088 10 C -0.012 4.012 11 N -0.138 5.138 12 C -0.110 4.110 13 C -0.173 4.173 14 C 0.397 3.603 15 O -0.458 6.458 16 N -0.355 5.355 17 C -0.018 4.018 18 C 0.010 3.990 19 C -0.556 4.556 20 H 0.079 0.921 21 C -0.135 4.135 22 N -0.521 5.521 23 Si 0.721 3.279 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.202 1.202 27 C 0.003 3.997 28 N -0.153 5.153 29 C -0.063 4.063 30 C 0.016 3.984 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.113 0.887 35 H 0.110 0.890 36 H 0.099 0.901 37 H 0.062 0.938 38 H 0.118 0.882 39 H 0.068 0.932 40 H 0.112 0.888 41 H 0.113 0.887 42 H 0.203 0.797 43 H 0.079 0.921 44 H 0.091 0.909 45 H 0.080 0.920 46 H 0.072 0.928 47 H 0.087 0.913 48 H 0.092 0.908 49 H 0.083 0.917 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 13.184 14.758 15.420 25.087 hybrid contribution 0.162 0.862 -0.791 1.181 sum 13.346 15.619 14.629 25.221 Atomic orbital electron populations 1.21379 0.92584 1.02050 1.02205 1.22401 0.95534 0.94363 1.04801 0.88055 1.23169 1.02354 1.01165 0.93898 1.22405 0.98038 1.02060 0.94233 0.86917 1.21689 0.95588 0.90097 0.96203 1.61997 1.01500 1.39392 1.23480 1.22413 0.90787 0.95330 1.00296 1.22114 0.91273 0.94278 0.93542 1.45210 1.10474 1.26821 1.31290 1.22293 1.01078 0.93032 0.94625 1.20755 0.90454 1.01797 1.04294 1.16600 0.81359 0.81755 0.80550 1.90708 1.44182 1.46837 1.64059 1.50295 1.08001 1.37374 1.39828 1.23517 0.92888 0.93112 0.92298 1.20554 0.89907 0.93160 0.95401 1.20932 0.92954 1.49020 0.92718 0.92063 1.25004 0.98670 0.94808 0.95042 1.69960 1.23351 1.47644 1.11190 0.86639 0.81619 0.78778 0.80845 1.20178 1.21310 1.20178 1.23617 0.76399 0.98467 1.01218 1.70445 1.30624 1.05280 1.08969 1.23315 0.81027 1.01371 1.00629 1.20647 0.96050 0.92828 0.88864 0.92336 0.92236 0.91924 0.88738 0.88986 0.90145 0.93765 0.88212 0.93207 0.88820 0.88675 0.79667 0.92131 0.90863 0.92029 0.92753 0.91348 0.90766 0.91707 0.86944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.88 10.19 37.16 0.38 -0.50 16 2 C -0.15 -1.05 6.13 -90.62 -0.56 -1.60 16 3 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 4 C -0.17 -1.19 9.82 -26.73 -0.26 -1.45 16 5 C -0.15 -1.15 5.42 -90.62 -0.49 -1.64 16 6 H 0.11 1.05 6.45 -51.93 -0.34 0.72 16 7 C 0.09 0.62 5.24 -3.82 -0.02 0.60 16 8 N -0.54 -4.64 4.65 -235.18 -1.09 -5.74 16 9 C 0.04 0.26 5.55 -3.58 -0.02 0.24 16 10 C 0.11 0.85 7.23 -3.77 -0.03 0.82 16 11 N -0.45 -5.86 3.12 -113.34 -0.35 -6.22 16 12 C 0.03 0.44 11.36 -16.91 -0.19 0.24 16 13 C -0.04 -0.86 6.94 -82.92 -0.58 -1.43 16 14 C 0.61 13.86 8.04 -12.57 -0.10 13.75 16 15 O -0.58 -13.96 17.61 5.25 0.09 -13.87 16 16 N -0.62 -14.57 3.61 -179.52 -0.65 -15.21 16 17 C 0.10 2.36 8.39 -2.96 -0.02 2.34 16 18 C 0.03 0.73 3.60 -90.84 -0.33 0.41 16 19 C -0.52 -13.90 8.77 -34.44 -0.30 -14.20 16 20 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 21 C 0.07 1.84 5.46 -17.82 -0.10 1.75 16 22 N -0.88 -25.07 13.29 55.43 0.74 -24.34 16 23 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 C 0.12 3.01 7.45 -2.83 -0.02 2.99 16 28 N -0.43 -8.33 9.66 -6.97 -0.07 -8.40 16 29 C 0.20 3.02 7.76 -154.61 -1.20 1.82 16 30 C 0.14 1.64 5.56 -4.57 -0.03 1.61 16 31 H 0.06 0.43 7.90 -51.93 -0.41 0.02 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.09 0.70 8.05 -51.93 -0.42 0.28 16 35 H 0.09 0.56 8.03 -51.93 -0.42 0.14 16 36 H 0.08 0.44 7.60 -51.93 -0.39 0.04 16 37 H 0.04 0.29 8.09 -51.93 -0.42 -0.13 16 38 H 0.10 0.40 7.82 -51.93 -0.41 -0.01 16 39 H 0.05 0.34 8.07 -51.93 -0.42 -0.08 16 40 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.19 2.40 8.06 -52.48 -0.42 1.98 16 43 H 0.06 1.32 8.14 -51.92 -0.42 0.90 16 44 H 0.07 1.59 8.09 -51.93 -0.42 1.17 16 45 H 0.06 1.69 8.14 -51.93 -0.42 1.27 16 46 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 47 H 0.07 1.66 8.09 -51.93 -0.42 1.24 16 48 H 0.07 1.86 7.47 -51.93 -0.39 1.48 16 49 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 50 H 0.11 1.33 6.54 -51.93 -0.34 0.99 16 LS Contribution 407.17 15.07 6.14 6.14 Total: -1.00 -33.36 407.17 -12.22 -45.58 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -8.14 Total: 0.53 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: -3.86 Total: 5.75 kcal Atomic # 7 Polarization: -58.48 SS G_CDS: -1.43 Total: -59.91 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: 0.09 Total: -13.87 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.36 -12.22 -45.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277142504.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.374 kcal (2) G-P(sol) polarization free energy of solvation -33.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds