Wall clock time and date at job start Wed Apr 1 2020 02:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 115.54826 * 2 1 4 4 C 1.53007 * 117.49724 * 145.70890 * 2 1 3 5 5 C 1.52994 * 117.49928 * 214.32800 * 2 1 3 6 6 H 1.08998 * 117.50295 * 0.02562 * 5 2 1 7 7 C 1.53002 * 117.49659 * 145.02245 * 5 2 1 8 8 N 1.46907 * 109.47060 * 185.00129 * 7 5 2 9 9 C 1.46967 * 110.99801 * 190.00153 * 8 7 5 10 10 C 1.53394 * 109.68132 * 164.77266 * 9 8 7 11 11 N 1.46633 * 108.21948 * 49.88154 * 10 9 8 12 12 C 1.34594 * 128.38838 * 163.84244 * 11 10 9 13 13 C 1.36657 * 106.73758 * 180.38340 * 12 11 10 14 14 C 1.47320 * 126.20232 * 179.78581 * 13 12 11 15 15 O 1.21632 * 119.99779 * 359.70783 * 14 13 12 16 16 N 1.34770 * 120.00239 * 179.70918 * 14 13 12 17 17 C 1.47586 * 134.49328 * 179.97438 * 16 14 13 18 18 C 1.53950 * 86.11354 * 155.35990 * 17 16 14 19 19 C 1.50706 * 113.73627 * 137.95493 * 18 17 16 20 20 H 1.07995 * 120.00167 * 1.64697 * 19 18 17 21 21 C 1.37879 * 119.99394 * 181.92396 * 19 18 17 22 22 N 1.31514 * 120.00338 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99424 * 180.02562 * 21 19 18 24 24 H 1.48490 * 109.47405 * 60.00219 * 23 21 19 25 25 H 1.48503 * 109.46845 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47399 * 299.99813 * 23 21 19 27 27 C 1.47813 * 134.45830 * 359.86487 * 16 14 13 28 28 N 1.35960 * 107.59906 * 359.51535 * 13 12 11 29 29 C 1.29595 * 108.83998 * 0.22984 * 28 13 12 30 30 C 1.47309 * 111.00006 * 65.78875 * 8 7 5 31 31 H 1.09006 * 109.47567 * 205.66655 * 1 2 3 32 32 H 1.09001 * 109.47626 * 325.66962 * 1 2 3 33 33 H 1.09001 * 109.47423 * 85.67338 * 1 2 3 34 34 H 1.08997 * 117.49416 * 359.97438 * 4 2 1 35 35 H 1.09003 * 117.49562 * 214.98213 * 4 2 1 36 36 H 1.08997 * 109.47023 * 65.00215 * 7 5 2 37 37 H 1.08997 * 109.47544 * 304.99895 * 7 5 2 38 38 H 1.08995 * 109.43829 * 44.70679 * 9 8 7 39 39 H 1.08997 * 109.42885 * 284.83473 * 9 8 7 40 40 H 1.09000 * 109.71449 * 290.19358 * 10 9 8 41 41 H 1.09002 * 109.74631 * 169.57786 * 10 9 8 42 42 H 1.08003 * 126.63712 * 0.23986 * 12 11 10 43 43 H 1.09008 * 113.76654 * 41.06222 * 17 16 14 44 44 H 1.08991 * 113.77014 * 269.66271 * 17 16 14 45 45 H 1.09000 * 113.74485 * 269.15566 * 18 17 16 46 46 H 0.96996 * 119.99730 * 179.97438 * 22 21 19 47 47 H 1.09002 * 113.76703 * 90.37825 * 27 16 14 48 48 H 1.08998 * 113.83277 * 318.91803 * 27 16 14 49 49 H 1.08997 * 109.73577 * 54.75533 * 30 8 7 50 50 H 1.08997 * 109.74785 * 294.03838 * 30 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2364 -1.1213 0.7647 5 6 2.2364 -1.1207 -0.7653 6 1 1.6113 -1.8578 -1.2692 7 6 3.5490 -0.7754 -1.4716 8 7 4.0098 -1.9370 -2.2439 9 6 5.3769 -1.7296 -2.7419 10 6 5.9671 -3.0680 -3.2036 11 7 4.9979 -3.7134 -4.0948 12 6 5.1994 -4.7315 -4.9518 13 6 4.0016 -4.9741 -5.5633 14 6 3.7391 -6.0012 -6.5863 15 8 4.6388 -6.7275 -6.9637 16 7 2.5021 -6.1360 -7.1040 17 6 1.8943 -7.0260 -8.1123 18 6 0.5593 -6.7527 -7.3959 19 6 -0.5976 -6.5257 -8.3347 20 1 -0.4474 -6.5901 -9.4023 21 6 -1.8465 -6.2302 -7.8307 22 7 -2.0281 -6.1460 -6.5309 23 14 -3.2806 -5.9496 -8.9943 24 1 -3.5026 -7.1705 -9.8099 25 1 -4.5044 -5.6496 -8.2083 26 1 -2.9751 -4.8049 -9.8897 27 6 1.2093 -5.4529 -6.8880 28 7 3.0946 -4.0997 -5.0521 29 6 3.6848 -3.3488 -4.1763 30 6 3.0813 -2.2397 -3.3468 31 1 -0.3634 -0.9263 0.4451 32 1 -0.3634 0.8486 0.5796 33 1 -0.3634 0.0775 -1.0247 34 1 1.6111 -1.8587 1.2680 35 1 3.1715 -0.8756 1.2681 36 1 4.3021 -0.5105 -0.7295 37 1 3.3891 0.0676 -2.1438 38 1 5.9946 -1.3166 -1.9445 39 1 5.3556 -1.0339 -3.5807 40 1 6.1533 -3.7055 -2.3393 41 1 6.9001 -2.8937 -3.7396 42 1 6.1286 -5.2541 -5.1247 43 1 2.2268 -8.0617 -8.0417 44 1 1.9364 -6.6326 -9.1279 45 1 0.3311 -7.4676 -6.6054 46 1 -2.9066 -5.9377 -6.1765 47 1 1.0499 -4.5967 -7.5435 48 1 0.9959 -5.2347 -5.8416 49 1 2.9415 -1.3524 -3.9642 50 1 2.1220 -2.5626 -2.9424 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277142504.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:30 Heat of formation + Delta-G solvation = 76.592141 kcal Electronic energy + Delta-G solvation = -29838.954101 eV Core-core repulsion = 25868.458746 eV Total energy + Delta-G solvation = -3970.495355 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.44859 -40.78964 -39.66461 -38.53459 -37.80290 -35.14802 -34.58146 -31.95442 -31.24814 -30.40792 -29.56788 -27.85719 -26.97182 -26.79438 -25.70011 -23.74127 -23.53668 -21.92224 -21.62094 -21.12152 -20.19926 -19.79976 -18.73096 -18.30606 -17.55593 -17.33899 -16.80732 -16.59709 -16.38986 -16.30136 -15.94130 -15.85456 -15.10500 -15.05286 -14.81791 -14.71201 -14.40624 -14.15891 -13.96295 -13.85551 -13.45778 -13.29462 -13.28002 -13.10285 -13.04719 -12.83828 -12.75615 -12.58469 -12.50350 -12.25114 -12.22026 -11.98407 -11.52304 -11.29292 -11.05855 -10.87647 -10.77407 -10.76101 -10.60215 -10.48876 -9.77341 -9.50254 -9.29911 -8.12457 -6.24849 0.54608 1.32697 1.48538 1.50202 1.57085 1.58403 2.11518 2.42141 2.47692 2.54909 2.96357 3.13788 3.17517 3.49584 3.57558 3.70538 3.85759 3.97363 4.06200 4.13186 4.14790 4.27644 4.29939 4.39219 4.43499 4.47372 4.48582 4.51531 4.58316 4.61971 4.65820 4.66692 4.74152 4.80779 4.90706 4.92951 4.95659 4.97634 5.01239 5.09506 5.15445 5.21615 5.34001 5.44202 5.48302 5.59975 5.74307 5.83540 5.85667 6.07301 6.25213 6.78824 6.82001 6.87060 7.26060 7.44530 8.97450 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008485 B = 0.003019 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3299.088099 B = 9272.711935 C =12226.987436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.148 4.148 3 H 0.117 0.883 4 C -0.167 4.167 5 C -0.161 4.161 6 H 0.087 0.913 7 C 0.097 3.903 8 N -0.545 5.545 9 C 0.040 3.960 10 C 0.100 3.900 11 N -0.444 5.444 12 C 0.058 3.942 13 C -0.099 4.099 14 C 0.604 3.396 15 O -0.597 6.597 16 N -0.632 5.632 17 C 0.111 3.889 18 C 0.022 3.978 19 C -0.532 4.532 20 H 0.067 0.933 21 C 0.019 3.981 22 N -0.918 5.918 23 Si 0.962 3.038 24 H -0.269 1.269 25 H -0.285 1.285 26 H -0.268 1.268 27 C 0.146 3.854 28 N -0.482 5.482 29 C 0.202 3.798 30 C 0.150 3.850 31 H 0.049 0.951 32 H 0.070 0.930 33 H 0.054 0.946 34 H 0.084 0.916 35 H 0.108 0.892 36 H 0.105 0.895 37 H 0.050 0.950 38 H 0.137 0.863 39 H 0.051 0.949 40 H 0.107 0.893 41 H 0.127 0.873 42 H 0.213 0.787 43 H 0.067 0.933 44 H 0.086 0.914 45 H 0.031 0.969 46 H 0.264 0.736 47 H 0.063 0.937 48 H 0.056 0.944 49 H 0.072 0.928 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.404 17.537 16.136 28.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.166 4.166 3 H 0.135 0.865 4 C -0.204 4.204 5 C -0.180 4.180 6 H 0.106 0.894 7 C -0.029 4.029 8 N -0.271 5.271 9 C -0.088 4.088 10 C -0.020 4.020 11 N -0.125 5.125 12 C -0.084 4.084 13 C -0.227 4.227 14 C 0.396 3.604 15 O -0.481 6.481 16 N -0.363 5.363 17 C -0.011 4.011 18 C 0.003 3.997 19 C -0.570 4.570 20 H 0.086 0.914 21 C -0.181 4.181 22 N -0.556 5.556 23 Si 0.787 3.213 24 H -0.194 1.194 25 H -0.211 1.211 26 H -0.193 1.193 27 C 0.024 3.976 28 N -0.202 5.202 29 C -0.063 4.063 30 C 0.021 3.979 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.103 0.897 35 H 0.126 0.874 36 H 0.123 0.877 37 H 0.069 0.931 38 H 0.155 0.845 39 H 0.070 0.930 40 H 0.125 0.875 41 H 0.145 0.855 42 H 0.229 0.771 43 H 0.086 0.914 44 H 0.104 0.896 45 H 0.049 0.951 46 H 0.073 0.927 47 H 0.081 0.919 48 H 0.075 0.925 49 H 0.090 0.910 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 15.205 16.921 16.332 28.005 hybrid contribution -0.378 0.222 -0.942 1.039 sum 14.827 17.143 15.390 27.397 Atomic orbital electron populations 1.21405 0.93229 1.02109 1.01813 1.22457 0.95148 0.94877 1.04156 0.86478 1.23214 1.02897 1.00917 0.93368 1.22382 0.98694 1.02181 0.94705 0.89432 1.21727 0.95467 0.89379 0.96372 1.62003 1.02019 1.40707 1.22325 1.22586 0.89827 0.94704 1.01661 1.22665 0.91242 0.94681 0.93383 1.45546 1.10697 1.25615 1.30634 1.22588 1.00331 0.92455 0.93037 1.20518 0.92660 1.03231 1.06254 1.17078 0.80566 0.82055 0.80712 1.90663 1.44427 1.47977 1.65055 1.50281 1.08288 1.37459 1.40311 1.23422 0.91270 0.93717 0.92657 1.20443 0.91102 0.93183 0.94993 1.21239 0.93677 1.48956 0.93176 0.91444 1.25820 1.01365 0.94425 0.96531 1.70094 1.23994 1.48525 1.13023 0.85554 0.78063 0.78962 0.78725 1.19418 1.21094 1.19343 1.23203 0.77006 0.97625 0.99783 1.70310 1.32210 1.06651 1.11012 1.23854 0.81912 1.00999 0.99536 1.20612 0.96073 0.91798 0.89409 0.93203 0.91107 0.92735 0.89715 0.87366 0.87712 0.93141 0.84473 0.93034 0.87472 0.85470 0.77065 0.91430 0.89623 0.95074 0.92717 0.91872 0.92538 0.91022 0.88373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.78 10.19 71.98 0.73 -1.05 16 2 C -0.15 -1.82 6.13 -10.79 -0.07 -1.89 16 3 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 4 C -0.17 -2.10 9.82 30.60 0.30 -1.80 16 5 C -0.16 -2.32 5.42 -10.80 -0.06 -2.38 16 6 H 0.09 1.72 6.45 -2.39 -0.02 1.70 16 7 C 0.10 1.04 5.24 86.30 0.45 1.50 16 8 N -0.55 -8.06 4.65 -897.97 -4.18 -12.24 16 9 C 0.04 0.36 5.55 86.42 0.48 0.84 16 10 C 0.10 1.14 7.23 86.49 0.63 1.77 16 11 N -0.44 -10.56 3.12 -512.51 -1.60 -12.16 16 12 C 0.06 1.71 11.36 83.90 0.95 2.66 16 13 C -0.10 -3.96 6.94 40.52 0.28 -3.68 16 14 C 0.60 28.34 8.04 86.63 0.70 29.04 16 15 O -0.60 -29.41 17.61 -4.13 -0.07 -29.48 16 16 N -0.63 -30.66 3.61 -840.11 -3.03 -33.70 16 17 C 0.11 5.20 8.39 86.49 0.73 5.92 16 18 C 0.02 1.17 3.60 -10.87 -0.04 1.13 16 19 C -0.53 -29.14 8.77 25.60 0.22 -28.91 16 20 H 0.07 3.53 7.81 -2.91 -0.02 3.51 16 21 C 0.02 1.03 5.46 84.66 0.46 1.49 16 22 N -0.92 -53.57 13.29 21.45 0.28 -53.28 16 23 Si 0.96 42.97 29.54 68.60 2.03 45.00 16 24 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 25 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 26 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 27 C 0.15 7.41 7.45 86.44 0.64 8.06 16 28 N -0.48 -19.14 9.66 -175.96 -1.70 -20.84 16 29 C 0.20 6.04 7.76 138.03 1.07 7.11 16 30 C 0.15 3.33 5.56 85.60 0.48 3.81 16 31 H 0.05 0.76 7.90 -2.38 -0.02 0.74 16 32 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.08 1.22 8.05 -2.39 -0.02 1.20 16 35 H 0.11 1.00 8.03 -2.39 -0.02 0.98 16 36 H 0.10 0.66 7.60 -2.39 -0.02 0.65 16 37 H 0.05 0.50 8.09 -2.39 -0.02 0.49 16 38 H 0.14 0.30 7.82 -2.39 -0.02 0.28 16 39 H 0.05 0.50 8.07 -2.39 -0.02 0.48 16 40 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.21 4.97 8.06 -2.91 -0.02 4.95 16 43 H 0.07 3.02 8.14 -2.38 -0.02 3.00 16 44 H 0.09 3.77 8.09 -2.39 -0.02 3.75 16 45 H 0.03 1.81 8.14 -2.39 -0.02 1.79 16 46 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 47 H 0.06 3.22 8.09 -2.39 -0.02 3.20 16 48 H 0.06 3.03 7.47 -2.39 -0.02 3.01 16 49 H 0.07 1.47 8.09 -2.39 -0.02 1.45 16 50 H 0.10 2.45 6.54 -2.39 -0.02 2.43 16 Total: -1.00 -75.57 407.17 0.62 -74.95 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: 0.93 Total: 18.15 kcal Atomic # 6 Polarization: 15.65 SS G_CDS: 7.96 Total: 23.61 kcal Atomic # 7 Polarization: -122.00 SS G_CDS: -10.23 Total: -132.23 kcal Atomic # 8 Polarization: -29.41 SS G_CDS: -0.07 Total: -29.48 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -75.57 0.62 -74.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277142504.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.544 kcal (2) G-P(sol) polarization free energy of solvation -75.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds