Wall clock time and date at job start Wed Apr 1 2020 02:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 115.54553 * 2 1 4 4 C 1.53067 * 117.51766 * 145.71984 * 2 1 3 5 5 C 1.52999 * 117.50148 * 214.33311 * 2 1 3 6 6 H 1.08999 * 117.49709 * 144.99701 * 5 2 1 7 7 C 1.53000 * 117.49839 * 359.97438 * 5 2 1 8 8 N 1.46900 * 109.46989 * 175.08677 * 7 5 2 9 9 C 1.46965 * 110.99819 * 169.99764 * 8 7 5 10 10 C 1.53391 * 109.68901 * 164.78507 * 9 8 7 11 11 N 1.46630 * 108.22264 * 49.87866 * 10 9 8 12 12 C 1.34597 * 128.39436 * 163.53434 * 11 10 9 13 13 C 1.36653 * 106.74059 * 180.18552 * 12 11 10 14 14 C 1.47323 * 126.19590 * 179.97438 * 13 12 11 15 15 O 1.21621 * 120.00290 * 359.97438 * 14 13 12 16 16 N 1.34783 * 119.99499 * 180.02562 * 14 13 12 17 17 C 1.47059 * 136.05911 * 359.62095 * 16 14 13 18 18 C 1.53754 * 87.89001 * 152.97150 * 17 16 14 19 19 C 1.50697 * 114.09124 * 139.77780 * 18 17 16 20 20 H 1.07993 * 120.00671 * 266.56164 * 19 18 17 21 21 C 1.37884 * 119.99769 * 86.56176 * 19 18 17 22 22 N 1.31515 * 119.99777 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99801 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47413 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46732 * 120.00471 * 23 21 19 26 26 H 1.48502 * 109.46937 * 239.99986 * 23 21 19 27 27 C 1.47067 * 136.05331 * 180.02562 * 16 14 13 28 28 N 1.35960 * 107.59890 * 359.79580 * 13 12 11 29 29 C 1.29591 * 108.83865 * 0.22504 * 28 13 12 30 30 C 1.47309 * 110.99987 * 45.79065 * 8 7 5 31 31 H 1.08999 * 109.46970 * 205.66790 * 1 2 3 32 32 H 1.08995 * 109.47705 * 325.66877 * 1 2 3 33 33 H 1.09002 * 109.47200 * 85.66921 * 1 2 3 34 34 H 1.09007 * 117.51116 * 0.02562 * 4 2 1 35 35 H 1.08993 * 117.49862 * 214.96382 * 4 2 1 36 36 H 1.08995 * 109.47494 * 55.08682 * 7 5 2 37 37 H 1.09004 * 109.46689 * 295.08633 * 7 5 2 38 38 H 1.08994 * 109.43748 * 44.71694 * 9 8 7 39 39 H 1.09000 * 109.43285 * 284.85097 * 9 8 7 40 40 H 1.08993 * 109.71227 * 290.19099 * 10 9 8 41 41 H 1.08998 * 109.71198 * 169.55679 * 10 9 8 42 42 H 1.08006 * 126.62881 * 0.18898 * 12 11 10 43 43 H 1.09007 * 113.47181 * 267.70203 * 17 16 14 44 44 H 1.09003 * 113.46781 * 38.14251 * 17 16 14 45 45 H 1.09000 * 114.57718 * 272.66692 * 18 17 16 46 46 H 0.97000 * 120.00108 * 180.02562 * 22 21 19 47 47 H 1.08998 * 113.46839 * 321.86040 * 27 16 14 48 48 H 1.09003 * 113.47157 * 92.24067 * 27 16 14 49 49 H 1.08999 * 109.74399 * 54.76935 * 30 8 7 50 50 H 1.09001 * 109.74989 * 294.05685 * 30 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9835 0.0000 4 6 2.2372 -1.1217 0.7646 5 6 2.2365 -1.1207 -0.7654 6 1 3.1714 -0.8745 -1.2689 7 6 1.3589 -2.1559 -1.4718 8 7 2.2084 -3.0738 -2.2424 9 6 1.4315 -4.2177 -2.7403 10 6 2.2244 -4.9441 -3.8341 11 7 3.5777 -5.1960 -3.3288 12 6 4.5024 -6.0500 -3.8054 13 6 5.5999 -5.9315 -2.9997 14 6 6.8642 -6.6752 -3.1369 15 8 6.9992 -7.4848 -4.0344 16 7 7.8708 -6.4592 -2.2670 17 6 8.0928 -5.5953 -1.0978 18 6 9.0897 -6.6461 -0.5820 19 6 10.3306 -6.0623 0.0428 20 1 11.2171 -5.9123 -0.5554 21 6 10.3340 -5.7195 1.3784 22 7 9.2546 -5.9025 2.1070 23 14 11.8724 -4.9964 2.1530 24 1 12.9414 -4.8933 1.1275 25 1 11.5685 -3.6450 2.6884 26 1 12.3297 -5.8756 3.2589 27 6 9.2331 -6.9785 -2.0739 28 7 5.3149 -5.0001 -2.0512 29 6 4.1106 -4.5619 -2.2435 30 6 3.3626 -3.5210 -1.4438 31 1 -0.3633 -0.9263 0.4451 32 1 -0.3634 0.8486 0.5795 33 1 -0.3634 0.0776 -1.0247 34 1 1.6124 -1.8600 1.2674 35 1 3.1724 -0.8760 1.2676 36 1 0.6684 -1.6482 -2.1451 37 1 0.7940 -2.7202 -0.7297 38 1 0.4868 -3.8628 -3.1522 39 1 1.2324 -4.9059 -1.9188 40 1 2.2752 -4.3209 -4.7268 41 1 1.7391 -5.8905 -4.0729 42 1 4.3974 -6.7027 -4.6595 43 1 8.5575 -4.6408 -1.3452 44 1 7.2112 -5.4844 -0.4664 45 1 8.6419 -7.4425 0.0125 46 1 9.2568 -5.6610 3.0464 47 1 9.3232 -8.0461 -2.2742 48 1 9.9981 -6.3890 -2.5792 49 1 3.0156 -3.9560 -0.5066 50 1 4.0177 -2.6746 -1.2372 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277142509.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:33 Heat of formation + Delta-G solvation = 80.850691 kcal Electronic energy + Delta-G solvation = -29959.593140 eV Core-core repulsion = 25989.282449 eV Total energy + Delta-G solvation = -3970.310690 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.45801 -40.91757 -39.88292 -38.64843 -37.74737 -35.11104 -34.61061 -31.92365 -31.17326 -30.46225 -29.27752 -28.22096 -27.12694 -26.63402 -25.72174 -23.78243 -23.54693 -22.33627 -21.78450 -20.60925 -19.98956 -19.73766 -18.77276 -18.30230 -17.65102 -17.36838 -17.08883 -16.66815 -16.41849 -16.22687 -15.98510 -15.66144 -15.26177 -15.02100 -14.80156 -14.74441 -14.26569 -14.19046 -14.02043 -13.86539 -13.58419 -13.33188 -13.22972 -13.19620 -13.10555 -12.76768 -12.71878 -12.58268 -12.49133 -12.34789 -12.17023 -11.92244 -11.52610 -11.28266 -11.00905 -10.87892 -10.80746 -10.74218 -10.67594 -10.49182 -9.79397 -9.52050 -9.30512 -8.13898 -6.25775 0.53662 1.32046 1.47020 1.48668 1.56819 1.61143 2.11286 2.44524 2.48644 2.54180 2.85241 3.14580 3.17002 3.49158 3.58160 3.70032 3.82493 3.94064 3.96660 4.12027 4.16578 4.26182 4.29076 4.38874 4.41608 4.42431 4.47465 4.49234 4.57066 4.59031 4.65529 4.69313 4.75372 4.86216 4.88958 4.92872 4.94707 5.00819 5.03414 5.07565 5.15123 5.22128 5.29201 5.43371 5.46824 5.59227 5.73056 5.82730 5.84383 6.07079 6.25217 6.77925 6.82523 6.87527 7.25071 7.43674 8.96710 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.009095 B = 0.002959 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3077.918012 B = 9461.475271 C =12262.425084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.140 4.140 3 H 0.104 0.896 4 C -0.188 4.188 5 C -0.161 4.161 6 H 0.099 0.901 7 C 0.098 3.902 8 N -0.543 5.543 9 C 0.038 3.962 10 C 0.101 3.899 11 N -0.444 5.444 12 C 0.059 3.941 13 C -0.099 4.099 14 C 0.612 3.388 15 O -0.596 6.596 16 N -0.635 5.635 17 C 0.136 3.864 18 C 0.023 3.977 19 C -0.527 4.527 20 H 0.068 0.932 21 C 0.018 3.982 22 N -0.919 5.919 23 Si 0.963 3.037 24 H -0.262 1.262 25 H -0.280 1.280 26 H -0.281 1.281 27 C 0.108 3.892 28 N -0.482 5.482 29 C 0.202 3.798 30 C 0.154 3.846 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.105 0.895 37 H 0.049 0.951 38 H 0.138 0.862 39 H 0.048 0.952 40 H 0.111 0.889 41 H 0.126 0.874 42 H 0.214 0.786 43 H 0.065 0.935 44 H 0.053 0.947 45 H 0.036 0.964 46 H 0.264 0.736 47 H 0.062 0.938 48 H 0.085 0.915 49 H 0.065 0.935 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.238 10.977 -8.028 28.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.159 4.159 3 H 0.122 0.878 4 C -0.225 4.225 5 C -0.180 4.180 6 H 0.117 0.883 7 C -0.028 4.028 8 N -0.269 5.269 9 C -0.090 4.090 10 C -0.019 4.019 11 N -0.125 5.125 12 C -0.083 4.083 13 C -0.227 4.227 14 C 0.404 3.596 15 O -0.479 6.479 16 N -0.366 5.366 17 C 0.013 3.987 18 C 0.004 3.996 19 C -0.565 4.565 20 H 0.087 0.913 21 C -0.182 4.182 22 N -0.557 5.557 23 Si 0.788 3.212 24 H -0.186 1.186 25 H -0.206 1.206 26 H -0.207 1.207 27 C -0.014 4.014 28 N -0.202 5.202 29 C -0.064 4.064 30 C 0.024 3.976 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.115 0.885 35 H 0.104 0.896 36 H 0.123 0.877 37 H 0.067 0.933 38 H 0.156 0.844 39 H 0.066 0.934 40 H 0.129 0.871 41 H 0.144 0.856 42 H 0.230 0.770 43 H 0.083 0.917 44 H 0.071 0.929 45 H 0.054 0.946 46 H 0.073 0.927 47 H 0.080 0.920 48 H 0.103 0.897 49 H 0.083 0.917 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -24.841 11.064 -8.301 28.432 hybrid contribution 0.475 -0.498 0.787 1.045 sum -24.367 10.565 -7.514 27.601 Atomic orbital electron populations 1.21369 0.91548 1.02364 1.02586 1.22452 0.96282 0.94099 1.03049 0.87830 1.23272 1.02804 1.02424 0.93958 1.22412 1.01481 1.00491 0.93597 0.88330 1.21722 0.93433 0.91798 0.95863 1.62170 1.09102 1.16849 1.38736 1.22591 0.97682 0.91614 0.97084 1.22658 0.76800 1.03501 0.98949 1.45558 1.14611 1.29281 1.23074 1.22593 0.88119 0.96699 1.00895 1.20478 0.96690 1.05084 1.00413 1.16905 0.82145 0.81218 0.79353 1.90666 1.83242 1.38812 1.35220 1.49766 1.14386 1.42446 1.30014 1.23153 0.97975 0.94956 0.82626 1.20301 0.94984 0.94358 0.89978 1.21233 0.98004 1.42068 0.95179 0.91337 1.25847 0.99171 0.95582 0.97643 1.70110 1.29710 1.48104 1.07817 0.85424 0.79510 0.77860 0.78359 1.18643 1.20581 1.20661 1.23264 0.81962 0.98781 0.97408 1.70301 1.13947 1.11654 1.24295 1.23912 0.90673 0.99980 0.91804 1.20571 0.91698 0.93259 0.92027 0.92286 0.91714 0.91097 0.88450 0.89599 0.87730 0.93255 0.84397 0.93367 0.87109 0.85573 0.76979 0.91671 0.92864 0.94595 0.92714 0.91972 0.89654 0.91741 0.87953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.01 9.20 71.98 0.66 -0.35 16 2 C -0.14 -1.69 6.41 -10.77 -0.07 -1.76 16 3 H 0.10 1.27 8.14 -2.38 -0.02 1.25 16 4 C -0.19 -2.79 9.83 30.62 0.30 -2.48 16 5 C -0.16 -2.26 4.44 -10.79 -0.05 -2.31 16 6 H 0.10 1.73 7.28 -2.39 -0.02 1.71 16 7 C 0.10 1.06 4.56 86.30 0.39 1.45 16 8 N -0.54 -7.96 4.80 -897.98 -4.31 -12.27 16 9 C 0.04 0.36 5.51 86.42 0.48 0.83 16 10 C 0.10 1.14 7.23 86.49 0.63 1.77 16 11 N -0.44 -10.55 3.12 -512.53 -1.60 -12.15 16 12 C 0.06 1.74 11.36 83.90 0.95 2.69 16 13 C -0.10 -3.96 6.95 40.52 0.28 -3.68 16 14 C 0.61 28.69 8.06 86.63 0.70 29.39 16 15 O -0.60 -29.33 17.66 -4.10 -0.07 -29.40 16 16 N -0.64 -30.80 3.69 -861.80 -3.18 -33.98 16 17 C 0.14 6.84 7.35 83.27 0.61 7.46 16 18 C 0.02 1.22 3.80 -11.11 -0.04 1.18 16 19 C -0.53 -28.78 8.82 25.60 0.23 -28.55 16 20 H 0.07 3.59 7.81 -2.91 -0.02 3.57 16 21 C 0.02 0.96 5.46 84.66 0.46 1.43 16 22 N -0.92 -53.63 13.26 21.45 0.28 -53.34 16 23 Si 0.96 42.96 29.54 68.60 2.03 44.99 16 24 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 25 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 26 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 27 C 0.11 5.06 8.18 83.18 0.68 5.74 16 28 N -0.48 -19.16 9.77 -175.96 -1.72 -20.88 16 29 C 0.20 6.03 7.76 138.03 1.07 7.10 16 30 C 0.15 3.44 5.18 85.60 0.44 3.88 16 31 H 0.06 0.47 7.90 -2.39 -0.02 0.45 16 32 H 0.06 0.49 8.14 -2.39 -0.02 0.48 16 33 H 0.07 0.45 7.84 -2.39 -0.02 0.44 16 34 H 0.10 1.35 7.94 -2.38 -0.02 1.33 16 35 H 0.09 1.46 8.14 -2.39 -0.02 1.45 16 36 H 0.10 0.78 7.77 -2.39 -0.02 0.76 16 37 H 0.05 0.48 7.81 -2.38 -0.02 0.46 16 38 H 0.14 0.34 8.00 -2.39 -0.02 0.32 16 39 H 0.05 0.52 8.07 -2.39 -0.02 0.50 16 40 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.13 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.21 4.94 8.06 -2.91 -0.02 4.92 16 43 H 0.07 3.27 8.10 -2.38 -0.02 3.25 16 44 H 0.05 2.84 7.43 -2.39 -0.02 2.82 16 45 H 0.04 2.10 8.11 -2.39 -0.02 2.08 16 46 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 47 H 0.06 2.81 8.14 -2.39 -0.02 2.79 16 48 H 0.09 3.76 8.10 -2.39 -0.02 3.74 16 49 H 0.06 1.43 8.13 -2.39 -0.02 1.41 16 50 H 0.10 2.49 6.57 -2.39 -0.02 2.47 16 Total: -1.00 -75.36 405.33 0.08 -75.28 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: 0.93 Total: 17.96 kcal Atomic # 6 Polarization: 16.07 SS G_CDS: 7.73 Total: 23.80 kcal Atomic # 7 Polarization: -122.10 SS G_CDS: -10.52 Total: -132.63 kcal Atomic # 8 Polarization: -29.33 SS G_CDS: -0.07 Total: -29.40 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -75.36 0.08 -75.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277142509.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.126 kcal (2) G-P(sol) polarization free energy of solvation -75.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds