Wall clock time and date at job start Wed Apr 1 2020 02:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 115.55318 * 2 1 4 4 C 1.53080 * 117.51239 * 214.28152 * 2 1 3 5 5 C 1.52996 * 117.49863 * 145.67042 * 2 1 3 6 6 H 1.08997 * 117.50003 * 214.99801 * 5 2 1 7 7 C 1.52999 * 117.49894 * 0.02562 * 5 2 1 8 8 N 1.46900 * 109.47325 * 183.78099 * 7 5 2 9 9 C 1.46987 * 111.00329 * 73.67283 * 8 7 5 10 10 C 1.53406 * 109.59221 * 165.26843 * 9 8 7 11 11 N 1.46495 * 108.25383 * 49.53388 * 10 9 8 12 12 C 1.37300 * 128.58065 * 163.65883 * 11 10 9 13 13 C 1.46764 * 126.94017 * 0.26293 * 12 11 10 14 14 O 1.21682 * 120.00006 * 354.35887 * 13 12 11 15 15 N 1.34776 * 120.00489 * 174.35246 * 13 12 11 16 16 C 1.47072 * 136.05427 * 354.82511 * 15 13 12 17 17 C 1.53231 * 88.08325 * 207.20387 * 16 15 13 18 18 C 1.50695 * 114.32789 * 220.47201 * 17 16 15 19 19 H 1.07995 * 120.00108 * 93.76190 * 18 17 16 20 20 C 1.37882 * 119.99900 * 273.75557 * 18 17 16 21 21 N 1.31515 * 120.00087 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 120.00031 * 0.02562 * 20 18 17 23 23 H 1.48505 * 109.47027 * 89.99544 * 22 20 18 24 24 H 1.48495 * 109.47330 * 209.99658 * 22 20 18 25 25 H 1.48505 * 109.47206 * 329.99991 * 22 20 18 26 26 C 1.47064 * 136.06050 * 175.20027 * 15 13 12 27 27 C 1.36918 * 106.12929 * 180.23648 * 12 11 10 28 28 N 1.33532 * 107.85235 * 359.94267 * 27 12 11 29 29 C 1.30352 * 109.67236 * 359.95298 * 28 27 12 30 30 C 1.47207 * 111.02327 * 309.35993 * 8 7 5 31 31 H 1.08997 * 109.47412 * 274.33332 * 1 2 3 32 32 H 1.09007 * 109.47479 * 34.33066 * 1 2 3 33 33 H 1.09002 * 109.47411 * 154.32534 * 1 2 3 34 34 H 1.08997 * 117.49239 * 145.03597 * 4 2 1 35 35 H 1.09003 * 117.50815 * 359.97438 * 4 2 1 36 36 H 1.09005 * 109.47552 * 63.77465 * 7 5 2 37 37 H 1.09001 * 109.46737 * 303.77802 * 7 5 2 38 38 H 1.09006 * 109.45181 * 45.22813 * 9 8 7 39 39 H 1.09005 * 109.44869 * 285.30872 * 9 8 7 40 40 H 1.08999 * 109.70750 * 289.83985 * 10 9 8 41 41 H 1.09001 * 109.74477 * 169.24442 * 10 9 8 42 42 H 1.09001 * 113.46482 * 321.93920 * 16 15 13 43 43 H 1.08996 * 113.46824 * 92.37319 * 16 15 13 44 44 H 1.09004 * 114.19902 * 87.72763 * 17 16 15 45 45 H 0.97001 * 120.00028 * 180.02562 * 21 20 18 46 46 H 1.09003 * 113.46160 * 267.62374 * 26 15 13 47 47 H 1.08998 * 113.46700 * 38.05729 * 26 15 13 48 48 H 1.08000 * 126.07190 * 179.97438 * 27 12 11 49 49 H 1.09000 * 109.63581 * 54.50652 * 30 8 7 50 50 H 1.09001 * 109.77443 * 293.85285 * 30 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2371 -1.1218 -0.7647 5 6 2.2364 -1.1207 0.7653 6 1 3.1713 -0.8747 1.2688 7 6 1.3588 -2.1560 1.4716 8 7 2.2098 -3.0903 2.2204 9 6 2.7571 -2.4534 3.4267 10 6 3.3238 -3.5278 4.3637 11 7 4.1983 -4.4044 3.5809 12 6 5.1425 -5.2944 4.0300 13 6 5.4930 -5.5785 5.4265 14 8 4.9962 -4.9239 6.3238 15 7 6.3652 -6.5647 5.7152 16 6 7.0803 -7.6017 4.9561 17 6 7.1050 -8.4472 6.2337 18 6 8.4021 -9.1770 6.4702 19 1 9.1690 -8.7299 7.0852 20 6 8.6096 -10.4158 5.9015 21 7 9.7418 -11.0526 6.1074 22 14 7.2834 -11.1891 4.8373 23 1 7.4833 -10.7818 3.4233 24 1 7.3640 -12.6681 4.9426 25 1 5.9483 -10.7320 5.3001 26 6 7.0155 -7.0815 6.9287 27 6 5.6906 -5.8638 2.9119 28 7 5.0909 -5.3302 1.8448 29 6 4.1993 -4.4613 2.2312 30 6 3.2823 -3.6276 1.3671 31 1 -0.3634 0.0776 1.0247 32 1 -0.3634 0.8487 -0.5796 33 1 -0.3634 -0.9262 -0.4452 34 1 3.1723 -0.8760 -1.2677 35 1 1.6122 -1.8600 -1.2674 36 1 0.7787 -2.7066 0.7310 37 1 0.6820 -1.6496 2.1599 38 1 1.9659 -1.9057 3.9389 39 1 3.5515 -1.7627 3.1439 40 1 2.5076 -4.1098 4.7917 41 1 3.8962 -3.0554 5.1620 42 1 6.4848 -8.0428 4.1568 43 1 8.0701 -7.2904 4.6223 44 1 6.2255 -9.0765 6.3702 45 1 9.8879 -11.9239 5.7070 46 1 7.9880 -6.6302 7.1257 47 1 6.3651 -7.0812 7.8034 48 1 6.4693 -6.6119 2.8960 49 1 3.8428 -2.8055 0.9221 50 1 2.8521 -4.2485 0.5812 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277142928.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:56 Heat of formation + Delta-G solvation = 104.247521 kcal Electronic energy + Delta-G solvation = -30081.671474 eV Core-core repulsion = 26112.375347 eV Total energy + Delta-G solvation = -3969.296128 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.44792 -39.73374 -39.36681 -37.23509 -37.12668 -34.02647 -32.69245 -31.22551 -29.96762 -29.62828 -28.88026 -27.42290 -25.45453 -25.28361 -24.62901 -23.27811 -22.39804 -21.73121 -20.40996 -20.15000 -19.04284 -18.53485 -17.32330 -17.03944 -16.88161 -16.56142 -16.12959 -15.62438 -15.13517 -15.02465 -14.81253 -14.72748 -14.21144 -14.00376 -13.84081 -13.65920 -13.37178 -13.31984 -13.04146 -12.87037 -12.68358 -12.49424 -12.41159 -12.10646 -11.97627 -11.88240 -11.82316 -11.80293 -11.79424 -10.94495 -10.77327 -10.43305 -10.32967 -10.22769 -10.00983 -9.83134 -9.69785 -9.47015 -9.24431 -8.94968 -8.68975 -8.44192 -8.08013 -6.21943 -4.25654 1.43529 2.41784 2.84274 3.09963 3.22555 3.30201 3.31726 3.33612 3.44387 3.59252 4.01889 4.12131 4.24882 4.30458 4.31996 4.35250 4.52537 4.65009 4.74863 4.80763 4.91846 4.99464 5.04455 5.11885 5.14470 5.18008 5.22357 5.28889 5.30731 5.34670 5.38470 5.45733 5.52494 5.56936 5.67094 5.69558 5.79001 5.87740 5.93909 6.11733 6.19751 6.26968 6.32631 6.35159 6.40812 6.49580 6.65377 7.01623 7.14154 7.51979 7.92969 8.17833 8.33712 8.49571 8.80820 9.38364 10.89698 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.024526 B = 0.002224 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.384333 B =12589.223317 C =13258.965139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.146 4.146 3 H 0.102 0.898 4 C -0.171 4.171 5 C -0.195 4.195 6 H 0.103 0.897 7 C 0.091 3.909 8 N -0.537 5.537 9 C 0.038 3.962 10 C 0.112 3.888 11 N -0.420 5.420 12 C -0.064 4.064 13 C 0.612 3.388 14 O -0.566 6.566 15 N -0.631 5.631 16 C 0.079 3.921 17 C -0.011 4.011 18 C -0.512 4.512 19 H 0.081 0.919 20 C 0.079 3.921 21 N -0.891 5.891 22 Si 0.871 3.129 23 H -0.271 1.271 24 H -0.286 1.286 25 H -0.262 1.262 26 C 0.120 3.880 27 C 0.032 3.968 28 N -0.487 5.487 29 C 0.218 3.782 30 C 0.144 3.856 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.102 0.898 39 H 0.049 0.951 40 H 0.094 0.906 41 H 0.106 0.894 42 H 0.060 0.940 43 H 0.091 0.909 44 H 0.068 0.932 45 H 0.267 0.733 46 H 0.084 0.916 47 H 0.064 0.936 48 H 0.184 0.816 49 H 0.072 0.928 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.597 20.837 -12.185 29.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.165 4.165 3 H 0.120 0.880 4 C -0.208 4.208 5 C -0.215 4.215 6 H 0.121 0.879 7 C -0.037 4.037 8 N -0.260 5.260 9 C -0.091 4.091 10 C -0.010 4.010 11 N -0.101 5.101 12 C -0.181 4.181 13 C 0.402 3.598 14 O -0.448 6.448 15 N -0.363 5.363 16 C -0.043 4.043 17 C -0.031 4.031 18 C -0.549 4.549 19 H 0.099 0.901 20 C -0.125 4.125 21 N -0.527 5.527 22 Si 0.698 3.302 23 H -0.197 1.197 24 H -0.211 1.211 25 H -0.187 1.187 26 C -0.001 4.001 27 C -0.121 4.121 28 N -0.206 5.206 29 C -0.044 4.044 30 C 0.015 3.985 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.112 0.888 35 H 0.116 0.884 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.121 0.879 39 H 0.068 0.932 40 H 0.112 0.888 41 H 0.124 0.876 42 H 0.079 0.921 43 H 0.109 0.891 44 H 0.086 0.914 45 H 0.077 0.923 46 H 0.102 0.898 47 H 0.083 0.917 48 H 0.201 0.799 49 H 0.090 0.910 50 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -18.119 20.671 -12.309 30.118 hybrid contribution -0.043 0.374 -0.104 0.390 sum -18.162 21.045 -12.412 30.443 Atomic orbital electron populations 1.21360 0.92621 1.02167 1.01959 1.22340 0.95510 0.94307 1.04369 0.87987 1.23213 1.02716 1.01557 0.93310 1.23156 1.02012 1.01291 0.95012 0.87934 1.21858 0.94176 0.90665 0.96984 1.62282 1.21020 1.35895 1.06826 1.22554 0.99877 0.95074 0.91570 1.22177 0.93603 0.91280 0.93955 1.45014 1.27822 1.30011 1.07282 1.20664 1.00046 1.01511 0.95877 1.16195 0.79461 0.78811 0.85380 1.90738 1.55407 1.50529 1.48117 1.49546 1.41517 1.30252 1.14999 1.24018 0.95269 0.86109 0.98934 1.20870 0.99550 0.91762 0.90905 1.20729 0.99292 1.02410 1.32513 0.90083 1.24991 0.95290 0.96578 0.95630 1.69885 1.24208 1.14774 1.43837 0.86918 0.83017 0.78861 0.81424 1.19689 1.21143 1.18676 1.23180 0.95674 0.93357 0.87902 1.23041 1.01542 1.01214 0.86335 1.69796 1.09331 1.10400 1.31098 1.23241 0.99618 1.00323 0.81224 1.20631 0.88888 0.96109 0.92858 0.92075 0.92126 0.92275 0.88797 0.88364 0.89675 0.89698 0.87948 0.93235 0.88764 0.87615 0.92149 0.89053 0.91383 0.92293 0.89770 0.91709 0.79903 0.91011 0.87233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.52 9.20 37.16 0.34 -0.18 16 2 C -0.15 -0.75 6.41 -90.58 -0.58 -1.33 16 3 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 4 C -0.17 -0.93 9.83 -26.69 -0.26 -1.19 16 5 C -0.20 -1.12 3.97 -90.62 -0.36 -1.48 16 6 H 0.10 0.69 6.64 -51.93 -0.35 0.35 16 7 C 0.09 0.54 4.79 -3.82 -0.02 0.52 16 8 N -0.54 -4.60 4.85 -235.22 -1.14 -5.74 16 9 C 0.04 0.31 5.21 -3.57 -0.02 0.29 16 10 C 0.11 1.34 6.46 -3.83 -0.02 1.31 16 11 N -0.42 -6.38 3.16 -109.70 -0.35 -6.72 16 12 C -0.06 -1.13 6.94 -82.45 -0.57 -1.71 16 13 C 0.61 11.99 8.03 -12.82 -0.10 11.89 16 14 O -0.57 -11.98 16.27 5.20 0.08 -11.90 16 15 N -0.63 -12.30 3.69 -186.92 -0.69 -12.99 16 16 C 0.08 1.53 5.83 -8.64 -0.05 1.48 16 17 C -0.01 -0.24 2.99 -91.40 -0.27 -0.52 16 18 C -0.51 -13.02 9.38 -34.44 -0.32 -13.34 16 19 H 0.08 2.23 8.06 -52.49 -0.42 1.80 16 20 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 21 N -0.89 -25.43 13.96 55.43 0.77 -24.66 16 22 Si 0.87 19.96 27.42 -169.99 -4.66 15.30 16 23 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 24 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.26 -5.81 6.22 56.52 0.35 -5.45 16 26 C 0.12 2.35 8.19 -8.51 -0.07 2.28 16 27 C 0.03 0.56 10.97 -17.29 -0.19 0.37 16 28 N -0.49 -8.12 11.19 -10.32 -0.12 -8.23 16 29 C 0.22 3.15 7.75 -155.31 -1.20 1.94 16 30 C 0.14 1.45 5.58 -4.62 -0.03 1.42 16 31 H 0.06 0.24 7.87 -51.93 -0.41 -0.17 16 32 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.06 0.24 7.90 -51.93 -0.41 -0.17 16 34 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.10 0.50 7.94 -51.93 -0.41 0.09 16 36 H 0.08 0.49 7.88 -51.93 -0.41 0.08 16 37 H 0.08 0.44 7.48 -51.93 -0.39 0.05 16 38 H 0.10 0.62 7.78 -51.93 -0.40 0.22 16 39 H 0.05 0.41 7.17 -51.93 -0.37 0.04 16 40 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.11 1.33 7.38 -51.93 -0.38 0.95 16 42 H 0.06 1.11 6.92 -51.93 -0.36 0.75 16 43 H 0.09 1.71 8.10 -51.93 -0.42 1.29 16 44 H 0.07 1.51 6.50 -51.93 -0.34 1.17 16 45 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 46 H 0.08 1.59 8.10 -51.93 -0.42 1.17 16 47 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 48 H 0.18 2.98 5.65 -52.49 -0.30 2.68 16 49 H 0.07 0.65 6.36 -51.93 -0.33 0.32 16 50 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 392.85 15.07 5.92 5.92 Total: -1.00 -31.15 392.85 -11.85 -43.00 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -7.84 Total: 2.25 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: -3.83 Total: 3.76 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: -1.52 Total: -58.34 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: 0.08 Total: -11.90 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -4.66 Total: 15.30 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.15 -11.85 -43.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277142928.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.249 kcal (2) G-P(sol) polarization free energy of solvation -31.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds