Wall clock time and date at job start Wed Apr 1 2020 02:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 115.56211 * 2 1 4 4 C 1.53003 * 117.49749 * 214.30990 * 2 1 3 5 5 C 1.53001 * 117.49638 * 145.68943 * 2 1 3 6 6 H 1.09000 * 117.49775 * 214.99703 * 5 2 1 7 7 C 1.52994 * 117.50153 * 359.97438 * 5 2 1 8 8 N 1.46908 * 109.47311 * 185.00086 * 7 5 2 9 9 C 1.46941 * 111.00118 * 66.04117 * 8 7 5 10 10 C 1.53556 * 109.78918 * 52.96631 * 9 8 7 11 11 C 1.50762 * 107.78886 * 49.25371 * 10 9 8 12 12 N 1.34039 * 129.79869 * 164.03738 * 11 10 9 13 13 H 0.97004 * 124.99936 * 0.27457 * 12 11 10 14 14 N 1.28933 * 110.00091 * 180.29017 * 12 11 10 15 15 C 1.32283 * 110.16581 * 359.92364 * 14 12 11 16 16 C 1.47713 * 126.68089 * 179.97438 * 15 14 12 17 17 O 1.21566 * 119.99767 * 180.02562 * 16 15 14 18 18 N 1.34777 * 119.99741 * 0.02580 * 16 15 14 19 19 C 1.47578 * 134.49073 * 179.97438 * 18 16 15 20 20 C 1.53941 * 86.11649 * 155.35910 * 19 18 16 21 21 C 1.50706 * 113.74386 * 137.95260 * 20 19 18 22 22 H 1.08000 * 119.99302 * 1.92674 * 21 20 19 23 23 C 1.37871 * 120.00436 * 181.65207 * 21 20 19 24 24 N 1.31514 * 120.00481 * 180.02562 * 23 21 20 25 25 Si 1.86801 * 119.99745 * 359.97438 * 23 21 20 26 26 H 1.48504 * 109.47209 * 90.00365 * 25 23 21 27 27 H 1.48506 * 109.47294 * 210.00213 * 25 23 21 28 28 H 1.48501 * 109.47275 * 330.00116 * 25 23 21 29 29 C 1.47810 * 134.45713 * 359.87126 * 18 16 15 30 30 C 1.35805 * 122.91614 * 344.47073 * 11 10 9 31 31 C 1.47409 * 110.99981 * 190.61939 * 8 7 5 32 32 H 1.09008 * 109.46953 * 274.31029 * 1 2 3 33 33 H 1.09000 * 109.47456 * 34.31104 * 1 2 3 34 34 H 1.08999 * 109.47258 * 154.31755 * 1 2 3 35 35 H 1.08998 * 117.49722 * 145.02010 * 4 2 1 36 36 H 1.09002 * 117.49785 * 0.02562 * 4 2 1 37 37 H 1.08997 * 109.47468 * 65.00300 * 7 5 2 38 38 H 1.09002 * 109.47131 * 304.99871 * 7 5 2 39 39 H 1.08997 * 109.41571 * 292.87163 * 9 8 7 40 40 H 1.08996 * 109.36369 * 173.02939 * 9 8 7 41 41 H 1.09004 * 109.79890 * 289.68407 * 10 9 8 42 42 H 1.08998 * 109.84485 * 168.85786 * 10 9 8 43 43 H 1.09000 * 113.76717 * 41.05494 * 19 18 16 44 44 H 1.08998 * 113.87155 * 269.67237 * 19 18 16 45 45 H 1.09002 * 113.74553 * 269.15353 * 20 19 18 46 46 H 0.96995 * 120.00207 * 179.97438 * 24 23 21 47 47 H 1.08991 * 113.77554 * 90.37428 * 29 18 16 48 48 H 1.09001 * 113.83561 * 318.91172 * 29 18 16 49 49 H 1.08995 * 109.72224 * 46.23276 * 31 8 7 50 50 H 1.09000 * 109.71964 * 166.89606 * 31 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2364 -1.1210 -0.7650 5 6 2.2364 -1.1210 0.7650 6 1 3.1713 -0.8751 1.2686 7 6 1.3588 -2.1558 1.4719 8 7 2.2082 -3.0729 2.2438 9 6 2.8764 -2.3690 3.3471 10 6 1.8358 -1.6191 4.1913 11 6 0.7230 -2.5837 4.5142 12 7 -0.2447 -2.4991 5.4378 13 1 -0.3632 -1.7588 6.0533 14 7 -0.9947 -3.5467 5.3879 15 6 -0.5698 -4.3671 4.4411 16 6 -1.1599 -5.6701 4.0725 17 8 -0.6675 -6.3288 3.1773 18 7 -2.2442 -6.1286 4.7287 19 6 -3.0732 -7.3457 4.6327 20 6 -3.4383 -7.0869 6.1056 21 6 -4.8961 -7.3080 6.4173 22 1 -5.5679 -7.6493 5.6436 23 6 -5.3710 -7.0799 7.6913 24 7 -6.6431 -7.2733 7.9635 25 14 -4.2073 -6.4974 9.0315 26 1 -4.1729 -5.0129 9.0464 27 1 -4.6803 -6.9949 10.3484 28 1 -2.8436 -7.0215 8.7651 29 6 -3.0790 -5.6144 5.8348 30 6 0.5536 -3.7611 3.8589 31 6 1.4321 -4.2274 2.7315 32 1 -0.3633 0.0772 1.0248 33 1 -0.3634 0.8488 -0.5793 34 1 -0.3634 -0.9261 -0.4454 35 1 3.1715 -0.8752 -1.2683 36 1 1.6111 -1.8583 -1.2686 37 1 0.7943 -2.7210 0.7303 38 1 0.6679 -1.6476 2.1446 39 1 3.5944 -1.6568 2.9404 40 1 3.3984 -3.0922 3.9736 41 1 1.4404 -0.7752 3.6260 42 1 2.2948 -1.2629 5.1136 43 1 -2.4975 -8.2581 4.4765 44 1 -3.9162 -7.2524 3.9481 45 1 -2.7728 -7.5779 6.8156 46 1 -6.9771 -7.1132 8.8599 47 1 -3.9232 -5.0098 5.5038 48 1 -2.5080 -5.1468 6.6370 49 1 0.8182 -4.6256 1.9236 50 1 2.1104 -4.9998 3.0940 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277143280.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:06 Heat of formation + Delta-G solvation = 109.046233 kcal Electronic energy + Delta-G solvation = -30576.046986 eV Core-core repulsion = 26606.958946 eV Total energy + Delta-G solvation = -3969.088040 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.95652 -39.43723 -39.24619 -37.37482 -37.01547 -32.85450 -32.57384 -31.55876 -30.35795 -29.13015 -28.90173 -27.44563 -25.76146 -25.12414 -24.36832 -23.25180 -22.85502 -21.55184 -19.95589 -19.83647 -18.97567 -18.25282 -17.86579 -17.14984 -16.63945 -16.26358 -16.02768 -15.57346 -15.25697 -14.95885 -14.81990 -14.51039 -13.93796 -13.74792 -13.54065 -13.37913 -13.35369 -13.16151 -12.91425 -12.87311 -12.70506 -12.31358 -12.17558 -11.79107 -11.77118 -11.73525 -11.61643 -11.49018 -11.10345 -11.00182 -10.86002 -10.58612 -10.17491 -10.07272 -10.03131 -9.88660 -9.42351 -9.34804 -9.14539 -8.75078 -8.65554 -8.57379 -7.98150 -6.17993 -4.20109 1.68010 2.00088 2.72030 3.22648 3.30413 3.34194 3.37740 3.43597 3.74080 3.77095 4.24369 4.33345 4.39615 4.51136 4.55411 4.59459 4.64011 4.80427 4.92145 4.99421 5.07329 5.09749 5.18748 5.21204 5.29220 5.36569 5.47874 5.53238 5.56027 5.58357 5.62968 5.66476 5.69771 5.73673 5.84453 5.96467 6.01560 6.03266 6.05941 6.15342 6.25612 6.29719 6.47205 6.49609 6.61288 6.83060 6.87164 6.93307 7.23405 7.58209 7.82122 8.28528 8.40251 8.65854 8.85338 9.42999 10.94131 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.018468 B = 0.002560 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.744447 B =10932.760358 C =11202.809214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.157 4.157 3 H 0.101 0.899 4 C -0.170 4.170 5 C -0.142 4.142 6 H 0.106 0.894 7 C 0.082 3.918 8 N -0.527 5.527 9 C 0.059 3.941 10 C -0.084 4.084 11 C 0.003 3.997 12 N -0.374 5.374 13 H 0.443 0.557 14 N -0.252 5.252 15 C 0.017 3.983 16 C 0.609 3.391 17 O -0.551 6.551 18 N -0.626 5.626 19 C 0.121 3.879 20 C -0.015 4.015 21 C -0.511 4.511 22 H 0.080 0.920 23 C 0.077 3.923 24 N -0.894 5.894 25 Si 0.872 3.128 26 H -0.274 1.274 27 H -0.287 1.287 28 H -0.263 1.263 29 C 0.100 3.900 30 C -0.185 4.185 31 C 0.136 3.864 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.075 0.925 38 H 0.046 0.954 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.068 0.932 44 H 0.083 0.917 45 H 0.062 0.938 46 H 0.266 0.734 47 H 0.084 0.916 48 H 0.064 0.936 49 H 0.096 0.904 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.527 17.091 -10.340 27.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.176 4.176 3 H 0.119 0.881 4 C -0.207 4.207 5 C -0.160 4.160 6 H 0.124 0.876 7 C -0.046 4.046 8 N -0.248 5.248 9 C -0.070 4.070 10 C -0.124 4.124 11 C -0.125 4.125 12 N -0.086 5.086 13 H 0.287 0.713 14 N -0.088 5.088 15 C -0.143 4.143 16 C 0.396 3.604 17 O -0.429 6.429 18 N -0.358 5.358 19 C -0.001 4.001 20 C -0.035 4.035 21 C -0.549 4.549 22 H 0.098 0.902 23 C -0.126 4.126 24 N -0.531 5.531 25 Si 0.699 3.301 26 H -0.200 1.200 27 H -0.213 1.213 28 H -0.187 1.187 29 C -0.023 4.023 30 C -0.197 4.197 31 C 0.007 3.993 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.110 0.890 36 H 0.113 0.887 37 H 0.094 0.906 38 H 0.064 0.936 39 H 0.105 0.895 40 H 0.099 0.901 41 H 0.104 0.896 42 H 0.102 0.898 43 H 0.086 0.914 44 H 0.101 0.899 45 H 0.080 0.920 46 H 0.076 0.924 47 H 0.102 0.898 48 H 0.083 0.917 49 H 0.114 0.886 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 19.327 16.675 -10.300 27.526 hybrid contribution 0.276 1.250 1.317 1.837 sum 19.603 17.926 -8.983 28.041 Atomic orbital electron populations 1.21345 0.92932 1.02077 1.01762 1.22393 0.95406 0.94370 1.05420 0.88058 1.23131 1.02278 1.01177 0.94144 1.22347 1.00870 0.98728 0.94055 0.87555 1.21719 0.93569 0.92874 0.96452 1.62392 1.31053 1.09073 1.22325 1.22250 0.95473 0.97792 0.91477 1.20912 0.93334 0.96654 1.01505 1.21027 0.96262 0.99479 0.95684 1.43034 1.20621 1.17122 1.27810 0.71316 1.74157 1.18029 0.95954 1.20610 1.21659 0.97797 0.97135 0.97741 1.16570 0.80309 0.82577 0.80939 1.90728 1.63180 1.57738 1.31204 1.50261 1.25990 1.23795 1.35789 1.23310 0.91294 0.86115 0.99349 1.21112 0.98528 0.91326 0.92538 1.20829 0.90977 1.46000 0.97082 0.90174 1.24975 0.94881 0.94415 0.98328 1.69890 1.13560 1.48331 1.21324 0.86908 0.82031 0.79598 0.81567 1.19954 1.21283 1.18715 1.23986 0.91213 1.00749 0.86326 1.20669 0.99794 0.95623 1.03623 1.20628 0.93274 0.91952 0.93407 0.92413 0.92268 0.92344 0.89031 0.88712 0.90621 0.93640 0.89493 0.90116 0.89618 0.89810 0.91393 0.89906 0.91977 0.92436 0.89773 0.91745 0.88575 0.89071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.92 9.19 37.16 0.34 -0.58 16 2 C -0.16 -1.12 6.41 -90.62 -0.58 -1.70 16 3 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 4 C -0.17 -1.27 9.82 -26.73 -0.26 -1.53 16 5 C -0.14 -1.08 5.70 -90.62 -0.52 -1.60 16 6 H 0.11 0.75 6.47 -51.93 -0.34 0.41 16 7 C 0.08 0.77 3.71 -3.82 -0.01 0.76 16 8 N -0.53 -5.31 4.94 -235.45 -1.16 -6.47 16 9 C 0.06 0.46 5.61 -3.51 -0.02 0.44 16 10 C -0.08 -0.62 5.71 -27.56 -0.16 -0.78 16 11 C 0.00 0.04 6.54 -82.47 -0.54 -0.50 16 12 N -0.37 -4.43 6.82 33.43 0.23 -4.21 16 13 H 0.44 3.56 8.96 -190.16 -1.70 1.86 16 14 N -0.25 -4.09 10.70 33.25 0.36 -3.74 16 15 C 0.02 0.30 7.07 -83.03 -0.59 -0.28 16 16 C 0.61 12.33 8.06 -12.39 -0.10 12.23 16 17 O -0.55 -11.89 16.64 5.31 0.09 -11.80 16 18 N -0.63 -12.92 3.61 -179.40 -0.65 -13.56 16 19 C 0.12 2.47 8.39 -2.97 -0.02 2.45 16 20 C -0.02 -0.35 2.90 -90.83 -0.26 -0.61 16 21 C -0.51 -13.48 9.33 -34.44 -0.32 -13.80 16 22 H 0.08 2.28 8.06 -52.49 -0.42 1.85 16 23 C 0.08 2.11 5.47 -17.82 -0.10 2.01 16 24 N -0.89 -26.11 13.96 55.43 0.77 -25.33 16 25 Si 0.87 20.53 26.99 -169.99 -4.59 15.94 16 26 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 28 H -0.26 -5.99 6.29 56.52 0.36 -5.63 16 29 C 0.10 2.10 6.67 -2.83 -0.02 2.08 16 30 C -0.19 -2.64 5.67 -104.89 -0.59 -3.24 16 31 C 0.14 1.75 5.44 -4.87 -0.03 1.72 16 32 H 0.06 0.45 7.83 -51.92 -0.41 0.04 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.47 7.90 -51.93 -0.41 0.05 16 35 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.09 0.75 7.94 -51.93 -0.41 0.33 16 37 H 0.08 0.81 7.62 -51.93 -0.40 0.41 16 38 H 0.05 0.46 5.12 -51.93 -0.27 0.20 16 39 H 0.09 0.53 6.57 -51.93 -0.34 0.18 16 40 H 0.08 0.65 8.07 -51.93 -0.42 0.23 16 41 H 0.09 0.58 6.89 -51.93 -0.36 0.23 16 42 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 44 H 0.08 1.66 8.09 -51.93 -0.42 1.24 16 45 H 0.06 1.43 6.68 -51.93 -0.35 1.09 16 46 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 47 H 0.08 1.79 8.09 -51.93 -0.42 1.37 16 48 H 0.06 1.33 7.37 -51.93 -0.38 0.95 16 49 H 0.10 1.39 7.48 -51.93 -0.39 1.00 16 50 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 392.15 15.07 5.91 5.91 Total: -1.00 -31.68 392.15 -11.98 -43.66 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -9.15 Total: 2.54 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: -3.78 Total: -2.94 kcal Atomic # 7 Polarization: -52.86 SS G_CDS: -0.45 Total: -53.31 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.09 Total: -11.80 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -4.59 Total: 15.94 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.68 -11.98 -43.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277143280.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.704 kcal (2) G-P(sol) polarization free energy of solvation -31.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds