Wall clock time and date at job start Wed Apr 1 2020 03:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.47312 * 2 1 4 4 N 1.46493 * 109.47148 * 120.00080 * 2 1 3 5 5 C 1.36940 * 120.00186 * 275.00170 * 4 2 1 6 6 H 1.08000 * 119.99784 * 359.97438 * 5 4 2 7 7 C 1.38820 * 119.99855 * 179.97438 * 5 4 2 8 8 N 1.31617 * 119.99853 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 119.99667 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47119 * 89.99892 * 9 7 5 11 11 H 1.48501 * 109.47245 * 209.99805 * 9 7 5 12 12 H 1.48505 * 109.47348 * 330.00188 * 9 7 5 13 13 C 1.53000 * 109.47184 * 240.00397 * 2 1 3 14 14 H 1.08998 * 109.59025 * 51.67099 * 13 2 1 15 15 C 1.53203 * 109.58421 * 291.38734 * 13 2 1 16 16 C 1.53037 * 109.31130 * 185.43334 * 15 13 2 17 17 C 1.53050 * 109.53645 * 61.36669 * 16 15 13 18 18 C 1.53187 * 109.31256 * 298.63302 * 17 16 15 19 19 N 1.46924 * 108.77820 * 54.63708 * 18 17 16 20 20 C 1.34770 * 120.63469 * 126.40965 * 19 18 17 21 21 O 1.21484 * 120.00003 * 187.22650 * 20 19 18 22 22 C 1.48454 * 120.00005 * 7.23201 * 20 19 18 23 23 C 1.39537 * 120.55116 * 194.27195 * 22 20 19 24 24 C 1.38758 * 118.26258 * 179.73347 * 23 22 20 25 25 N 1.32206 * 119.14942 * 0.53288 * 24 23 22 26 26 C 1.31880 * 121.03441 * 359.72040 * 25 24 23 27 27 C 1.50697 * 119.04116 * 180.02562 * 26 25 24 28 28 C 1.52996 * 117.50146 * 8.72556 * 27 26 25 29 29 C 1.53002 * 117.49744 * 300.06564 * 27 26 25 30 30 N 1.31578 * 121.91708 * 0.02562 * 26 25 24 31 31 H 1.09003 * 109.47552 * 173.86442 * 1 2 3 32 32 H 1.08998 * 109.47253 * 293.87102 * 1 2 3 33 33 H 1.09003 * 109.47185 * 53.86830 * 1 2 3 34 34 H 0.97010 * 119.99894 * 95.00009 * 4 2 1 35 35 H 0.97001 * 119.99169 * 180.02562 * 8 7 5 36 36 H 1.08999 * 109.49828 * 305.38711 * 15 13 2 37 37 H 1.09003 * 109.49211 * 65.48504 * 15 13 2 38 38 H 1.08997 * 109.46294 * 181.38506 * 16 15 13 39 39 H 1.08998 * 109.46515 * 301.35232 * 16 15 13 40 40 H 1.08999 * 109.49545 * 178.68288 * 17 16 15 41 41 H 1.08997 * 109.52215 * 58.60087 * 17 16 15 42 42 H 1.09004 * 109.59049 * 294.84792 * 18 17 16 43 43 H 1.09002 * 109.58553 * 174.41978 * 18 17 16 44 44 H 1.08003 * 120.86741 * 359.96544 * 23 22 20 45 45 H 1.08005 * 120.42372 * 180.25408 * 24 23 22 46 46 H 1.09001 * 115.55067 * 154.39775 * 27 26 25 47 47 H 1.09002 * 117.49716 * 359.97438 * 28 27 26 48 48 H 1.09001 * 117.50475 * 145.02077 * 28 27 26 49 49 H 1.09001 * 117.49839 * 214.98124 * 29 27 26 50 50 H 1.09001 * 117.49880 * 359.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1490 -0.0075 2.3757 6 1 1.8925 1.0405 2.4242 7 6 2.6113 -0.6621 3.5093 8 7 2.9233 -1.9394 3.4503 9 14 2.7903 0.2699 5.1182 10 1 1.5225 0.1797 5.8862 11 1 3.8944 -0.3240 5.9141 12 1 3.0962 1.6949 4.8334 13 6 2.0400 -0.7212 -1.2493 14 1 1.5614 -0.3019 -2.1343 15 6 1.7149 -2.2149 -1.1486 16 6 2.3448 -2.9509 -2.3334 17 6 3.8655 -2.7835 -2.2899 18 6 4.2149 -1.2963 -2.4035 19 7 3.4967 -0.5603 -1.3542 20 6 4.1612 0.2474 -0.5043 21 8 3.5802 0.7472 0.4383 22 6 5.6032 0.5266 -0.7202 23 6 6.3725 1.1055 0.2899 24 6 7.7169 1.3405 0.0389 25 7 8.2170 1.0207 -1.1424 26 6 7.4603 0.4796 -2.0772 27 6 8.0771 0.1322 -3.4075 28 6 9.5984 0.2396 -3.5304 29 6 8.7000 1.2718 -4.2164 30 7 6.1824 0.2342 -1.8821 31 1 -0.3634 -1.0218 -0.1098 32 1 -0.3633 0.4159 0.9397 33 1 -0.3634 0.6060 -0.8300 34 1 2.2490 -1.6319 1.1525 35 1 3.2460 -2.3968 4.2425 36 1 2.1176 -2.6129 -0.2172 37 1 0.6339 -2.3539 -1.1670 38 1 2.0944 -4.0102 -2.2775 39 1 1.9603 -2.5356 -3.2649 40 1 4.3152 -3.3273 -3.1207 41 1 4.2484 -3.1763 -1.3481 42 1 3.9136 -0.9238 -3.3826 43 1 5.2889 -1.1624 -2.2739 44 1 5.9340 1.3604 1.2433 45 1 8.3456 1.7832 0.7974 46 1 7.5826 -0.6661 -3.9609 47 1 10.1530 0.5619 -2.6492 48 1 10.1047 -0.4878 -4.1650 49 1 8.6155 1.2230 -5.3021 50 1 8.6632 2.2728 -3.7866 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316882519.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:22 Heat of formation + Delta-G solvation = 109.018301 kcal Electronic energy + Delta-G solvation = -32119.269253 eV Core-core repulsion = 28150.180002 eV Total energy + Delta-G solvation = -3969.089251 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.36293 -39.87158 -37.34029 -36.76957 -35.30647 -33.82528 -32.26846 -32.06308 -31.65747 -29.55428 -28.02316 -26.19317 -25.09808 -24.21361 -23.83867 -23.18415 -22.55382 -21.83710 -20.59502 -19.87104 -18.84148 -17.72443 -17.10153 -16.83198 -15.81690 -15.62982 -15.37359 -15.29315 -14.83896 -14.56873 -14.22440 -14.19950 -14.00301 -13.73924 -13.54713 -13.35786 -12.89107 -12.66564 -12.38841 -12.13208 -12.07755 -11.90937 -11.73039 -11.34722 -11.20585 -11.06770 -11.01134 -10.84478 -10.70976 -10.66019 -10.59237 -10.52788 -10.45802 -10.20127 -10.08265 -9.81783 -9.35824 -9.31220 -9.04364 -8.69494 -8.37541 -7.90058 -6.59624 -5.50776 -2.72776 0.67972 0.89926 3.10048 3.24955 3.55146 3.59550 3.60859 3.62427 3.68234 3.93296 4.16466 4.56498 4.66321 4.77369 4.81096 4.81798 4.99370 5.11297 5.13154 5.18582 5.24681 5.42366 5.43563 5.50080 5.63236 5.67869 5.70926 5.74456 5.77881 5.84666 5.88413 5.92108 6.00198 6.08323 6.15028 6.20141 6.22929 6.32183 6.37164 6.48043 6.48931 6.57296 6.64462 6.87956 6.94809 7.05088 7.07394 7.41384 7.89978 7.98467 8.00544 8.67066 8.80402 9.79272 10.36875 10.73308 11.73659 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010613 B = 0.004403 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2637.642807 B = 6357.772893 C = 8118.639201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.168 3.832 3 H 0.080 0.920 4 N -0.703 5.703 5 C -0.178 4.178 6 H 0.065 0.935 7 C -0.030 4.030 8 N -0.947 5.947 9 Si 0.896 3.104 10 H -0.296 1.296 11 H -0.297 1.297 12 H -0.286 1.286 13 C 0.145 3.855 14 H 0.065 0.935 15 C -0.133 4.133 16 C -0.117 4.117 17 C -0.137 4.137 18 C 0.089 3.911 19 N -0.588 5.588 20 C 0.542 3.458 21 O -0.432 6.432 22 C 0.150 3.850 23 C -0.174 4.174 24 C 0.150 3.850 25 N -0.512 5.512 26 C 0.333 3.667 27 C -0.099 4.099 28 C -0.154 4.154 29 C -0.156 4.156 30 N -0.486 5.486 31 H 0.043 0.957 32 H 0.057 0.943 33 H 0.032 0.968 34 H 0.379 0.621 35 H 0.247 0.753 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.058 0.942 39 H 0.056 0.944 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.057 0.943 43 H 0.128 0.872 44 H 0.164 0.836 45 H 0.174 0.826 46 H 0.129 0.871 47 H 0.109 0.891 48 H 0.099 0.901 49 H 0.102 0.898 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.071 2.612 -17.737 20.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.058 3.942 3 H 0.098 0.902 4 N -0.345 5.345 5 C -0.310 4.310 6 H 0.083 0.917 7 C -0.223 4.223 8 N -0.599 5.599 9 Si 0.730 3.270 10 H -0.224 1.224 11 H -0.224 1.224 12 H -0.212 1.212 13 C 0.042 3.958 14 H 0.082 0.918 15 C -0.171 4.171 16 C -0.154 4.154 17 C -0.176 4.176 18 C -0.034 4.034 19 N -0.323 5.323 20 C 0.325 3.675 21 O -0.299 6.299 22 C 0.003 3.997 23 C -0.196 4.196 24 C -0.016 4.016 25 N -0.227 5.227 26 C 0.067 3.933 27 C -0.119 4.119 28 C -0.192 4.192 29 C -0.194 4.194 30 N -0.203 5.203 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.051 0.949 34 H 0.215 0.785 35 H 0.057 0.943 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.075 0.925 43 H 0.144 0.856 44 H 0.181 0.819 45 H 0.191 0.809 46 H 0.147 0.853 47 H 0.128 0.872 48 H 0.118 0.882 49 H 0.120 0.880 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 9.109 2.826 -17.884 20.269 hybrid contribution -0.247 0.112 1.829 1.849 sum 8.863 2.938 -16.056 18.573 Atomic orbital electron populations 1.22588 0.99985 1.00183 1.00346 1.20727 0.90411 0.97616 0.85479 0.90241 1.42447 1.77259 1.09753 1.05079 1.19100 1.32265 0.93213 0.86391 0.91697 1.24560 1.04186 0.95998 0.97550 1.69645 1.53622 1.08580 1.28088 0.86301 0.76993 0.78800 0.84930 1.22435 1.22385 1.21159 1.21646 0.78840 0.95979 0.99368 0.91752 1.21989 1.00701 0.95131 0.99312 1.21514 0.95416 1.00084 0.98434 1.21969 0.96529 0.96991 1.02063 1.22518 1.00749 0.90053 0.90037 1.47617 1.07330 1.44917 1.32425 1.17867 0.84146 0.82390 0.83130 1.91142 1.64307 1.48911 1.25567 1.22232 0.96253 0.92129 0.89075 1.23058 0.95465 0.98790 1.02296 1.23273 0.92778 0.92222 0.93356 1.67981 1.40057 1.12691 1.01966 1.22177 0.86247 0.90882 0.94035 1.20603 0.96242 1.03056 0.91995 1.23027 0.91090 1.01732 1.03336 1.22979 1.02939 0.94725 0.98794 1.68251 1.11848 1.17732 1.22468 0.93770 0.92429 0.94866 0.78547 0.94273 0.90077 0.91075 0.92316 0.92484 0.91643 0.91675 0.92497 0.85569 0.81874 0.80874 0.85315 0.87225 0.88242 0.87997 0.88635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.16 9.41 37.15 0.35 -2.81 16 2 C 0.17 3.45 1.88 -67.94 -0.13 3.32 16 3 H 0.08 1.79 5.83 -52.37 -0.31 1.49 16 4 N -0.70 -17.61 3.71 -53.43 -0.20 -17.81 16 5 C -0.18 -5.01 8.03 -15.05 -0.12 -5.13 16 6 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 7 C -0.03 -0.88 5.50 -17.43 -0.10 -0.97 16 8 N -0.95 -29.28 13.06 55.49 0.72 -28.56 16 9 Si 0.90 23.36 29.55 -169.99 -5.02 18.34 16 10 H -0.30 -7.74 7.11 56.52 0.40 -7.34 16 11 H -0.30 -7.83 7.11 56.52 0.40 -7.43 16 12 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 13 C 0.15 2.49 2.71 -67.59 -0.18 2.30 16 14 H 0.06 0.99 8.13 -51.93 -0.42 0.57 16 15 C -0.13 -2.16 4.89 -26.61 -0.13 -2.29 16 16 C -0.12 -1.54 5.88 -26.69 -0.16 -1.70 16 17 C -0.14 -1.83 6.08 -26.61 -0.16 -1.99 16 18 C 0.09 1.27 5.87 -3.71 -0.02 1.25 16 19 N -0.59 -10.11 2.97 -166.09 -0.49 -10.61 16 20 C 0.54 10.52 7.40 -12.05 -0.09 10.43 16 21 O -0.43 -9.87 9.34 5.38 0.05 -9.82 16 22 C 0.15 2.55 6.52 -82.63 -0.54 2.01 16 23 C -0.17 -2.69 9.72 -38.90 -0.38 -3.07 16 24 C 0.15 1.92 11.31 -17.20 -0.19 1.72 16 25 N -0.51 -6.78 9.33 -10.74 -0.10 -6.88 16 26 C 0.33 4.44 7.31 -157.31 -1.15 3.29 16 27 C -0.10 -0.99 6.23 -91.77 -0.57 -1.57 16 28 C -0.15 -1.28 10.01 -26.70 -0.27 -1.54 16 29 C -0.16 -1.29 10.24 -26.69 -0.27 -1.56 16 30 N -0.49 -7.20 6.39 -7.32 -0.05 -7.24 16 31 H 0.04 0.79 6.58 -51.93 -0.34 0.44 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.38 10.15 5.50 -40.82 -0.22 9.93 16 35 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 36 H 0.08 1.62 5.96 -51.93 -0.31 1.31 16 37 H 0.07 1.09 6.83 -51.93 -0.35 0.74 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.13 1.84 4.21 -69.56 -0.29 1.55 16 44 H 0.16 2.65 7.80 -52.48 -0.41 2.24 16 45 H 0.17 1.59 8.06 -52.48 -0.42 1.16 16 46 H 0.13 1.14 8.14 -51.93 -0.42 0.72 16 47 H 0.11 1.02 7.54 -51.93 -0.39 0.63 16 48 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 49 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 50 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 386.80 15.07 5.83 5.83 Total: -1.00 -32.77 386.80 -11.04 -43.81 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: -7.67 Total: 11.25 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: -4.11 Total: 1.68 kcal Atomic # 7 Polarization: -70.98 SS G_CDS: -0.11 Total: -71.09 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.05 Total: -9.82 kcal Atomic # 14 Polarization: 23.36 SS G_CDS: -5.02 Total: 18.34 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.77 -11.04 -43.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316882519.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.830 kcal (2) G-P(sol) polarization free energy of solvation -32.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds