Wall clock time and date at job start Wed Apr 1 2020 03:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.47312 * 2 1 4 4 N 1.46493 * 109.47148 * 120.00080 * 2 1 3 5 5 C 1.36940 * 120.00186 * 275.00170 * 4 2 1 6 6 H 1.08000 * 119.99784 * 359.97438 * 5 4 2 7 7 C 1.38820 * 119.99855 * 179.97438 * 5 4 2 8 8 N 1.31617 * 119.99853 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 119.99667 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47119 * 89.99892 * 9 7 5 11 11 H 1.48501 * 109.47245 * 209.99805 * 9 7 5 12 12 H 1.48505 * 109.47348 * 330.00188 * 9 7 5 13 13 C 1.53000 * 109.47184 * 240.00397 * 2 1 3 14 14 H 1.08998 * 109.59025 * 51.67099 * 13 2 1 15 15 C 1.53203 * 109.58421 * 291.38734 * 13 2 1 16 16 C 1.53037 * 109.31130 * 185.43334 * 15 13 2 17 17 C 1.53050 * 109.53645 * 61.36669 * 16 15 13 18 18 C 1.53187 * 109.31256 * 298.63302 * 17 16 15 19 19 N 1.46924 * 108.77820 * 54.63708 * 18 17 16 20 20 C 1.34770 * 120.63469 * 126.40965 * 19 18 17 21 21 O 1.21484 * 120.00003 * 187.22650 * 20 19 18 22 22 C 1.48454 * 120.00005 * 7.23201 * 20 19 18 23 23 C 1.39537 * 120.55116 * 194.27195 * 22 20 19 24 24 C 1.38758 * 118.26258 * 179.73347 * 23 22 20 25 25 N 1.32206 * 119.14942 * 0.53288 * 24 23 22 26 26 C 1.31880 * 121.03441 * 359.72040 * 25 24 23 27 27 C 1.50697 * 119.04116 * 180.02562 * 26 25 24 28 28 C 1.52996 * 117.50146 * 8.72556 * 27 26 25 29 29 C 1.53002 * 117.49744 * 300.06564 * 27 26 25 30 30 N 1.31578 * 121.91708 * 0.02562 * 26 25 24 31 31 H 1.09003 * 109.47552 * 173.86442 * 1 2 3 32 32 H 1.08998 * 109.47253 * 293.87102 * 1 2 3 33 33 H 1.09003 * 109.47185 * 53.86830 * 1 2 3 34 34 H 0.97010 * 119.99894 * 95.00009 * 4 2 1 35 35 H 0.97001 * 119.99169 * 180.02562 * 8 7 5 36 36 H 1.08999 * 109.49828 * 305.38711 * 15 13 2 37 37 H 1.09003 * 109.49211 * 65.48504 * 15 13 2 38 38 H 1.08997 * 109.46294 * 181.38506 * 16 15 13 39 39 H 1.08998 * 109.46515 * 301.35232 * 16 15 13 40 40 H 1.08999 * 109.49545 * 178.68288 * 17 16 15 41 41 H 1.08997 * 109.52215 * 58.60087 * 17 16 15 42 42 H 1.09004 * 109.59049 * 294.84792 * 18 17 16 43 43 H 1.09002 * 109.58553 * 174.41978 * 18 17 16 44 44 H 1.08003 * 120.86741 * 359.96544 * 23 22 20 45 45 H 1.08005 * 120.42372 * 180.25408 * 24 23 22 46 46 H 1.09001 * 115.55067 * 154.39775 * 27 26 25 47 47 H 1.09002 * 117.49716 * 359.97438 * 28 27 26 48 48 H 1.09001 * 117.50475 * 145.02077 * 28 27 26 49 49 H 1.09001 * 117.49839 * 214.98124 * 29 27 26 50 50 H 1.09001 * 117.49880 * 359.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1490 -0.0075 2.3757 6 1 1.8925 1.0405 2.4242 7 6 2.6113 -0.6621 3.5093 8 7 2.9233 -1.9394 3.4503 9 14 2.7903 0.2699 5.1182 10 1 1.5225 0.1797 5.8862 11 1 3.8944 -0.3240 5.9141 12 1 3.0962 1.6949 4.8334 13 6 2.0400 -0.7212 -1.2493 14 1 1.5614 -0.3019 -2.1343 15 6 1.7149 -2.2149 -1.1486 16 6 2.3448 -2.9509 -2.3334 17 6 3.8655 -2.7835 -2.2899 18 6 4.2149 -1.2963 -2.4035 19 7 3.4967 -0.5603 -1.3542 20 6 4.1612 0.2474 -0.5043 21 8 3.5802 0.7472 0.4383 22 6 5.6032 0.5266 -0.7202 23 6 6.3725 1.1055 0.2899 24 6 7.7169 1.3405 0.0389 25 7 8.2170 1.0207 -1.1424 26 6 7.4603 0.4796 -2.0772 27 6 8.0771 0.1322 -3.4075 28 6 9.5984 0.2396 -3.5304 29 6 8.7000 1.2718 -4.2164 30 7 6.1824 0.2342 -1.8821 31 1 -0.3634 -1.0218 -0.1098 32 1 -0.3633 0.4159 0.9397 33 1 -0.3634 0.6060 -0.8300 34 1 2.2490 -1.6319 1.1525 35 1 3.2460 -2.3968 4.2425 36 1 2.1176 -2.6129 -0.2172 37 1 0.6339 -2.3539 -1.1670 38 1 2.0944 -4.0102 -2.2775 39 1 1.9603 -2.5356 -3.2649 40 1 4.3152 -3.3273 -3.1207 41 1 4.2484 -3.1763 -1.3481 42 1 3.9136 -0.9238 -3.3826 43 1 5.2889 -1.1624 -2.2739 44 1 5.9340 1.3604 1.2433 45 1 8.3456 1.7832 0.7974 46 1 7.5826 -0.6661 -3.9609 47 1 10.1530 0.5619 -2.6492 48 1 10.1047 -0.4878 -4.1650 49 1 8.6155 1.2230 -5.3021 50 1 8.6632 2.2728 -3.7866 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316882519.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:21 Heat of formation + Delta-G solvation = 90.055135 kcal Electronic energy + Delta-G solvation = -32120.091558 eV Core-core repulsion = 28150.180002 eV Total energy + Delta-G solvation = -3969.911556 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.52126 -41.22321 -38.44954 -37.83564 -36.92045 -35.09677 -34.01070 -33.49005 -32.78020 -31.22945 -29.71023 -27.45898 -26.12178 -25.82780 -25.30576 -24.68164 -23.18251 -22.98885 -21.81617 -21.27480 -20.12069 -19.07578 -18.83237 -18.14736 -17.00252 -16.82891 -16.73204 -16.49232 -16.31267 -15.87644 -15.68073 -15.54754 -15.24821 -15.13975 -14.85576 -14.73835 -14.37764 -14.01181 -13.84742 -13.58260 -13.36499 -13.14937 -13.00593 -12.79837 -12.62783 -12.41539 -12.36516 -12.28871 -12.11791 -11.95085 -11.88584 -11.75407 -11.70552 -11.50946 -11.37533 -11.30189 -11.29304 -10.82507 -10.38932 -10.30613 -9.76243 -9.36526 -8.64826 -7.76312 -4.95492 -0.54050 -0.17881 1.44095 1.45142 1.53622 1.83850 1.96271 2.57512 2.66017 2.67336 2.89723 3.19825 3.41167 3.56978 3.71190 3.89416 3.91597 3.96822 3.97094 4.07023 4.12236 4.15221 4.18172 4.30145 4.36815 4.44142 4.51674 4.61060 4.66317 4.78163 4.84693 4.86972 4.94108 4.99360 5.02006 5.03192 5.09270 5.14090 5.18786 5.24540 5.28803 5.36395 5.39068 5.44707 5.55823 5.59078 5.67360 5.75216 5.94709 6.46364 6.54323 6.87242 7.34769 7.53581 8.31219 8.55834 9.48831 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010613 B = 0.004403 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2637.642807 B = 6357.772893 C = 8118.639201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.163 3.837 3 H 0.059 0.941 4 N -0.706 5.706 5 C -0.159 4.159 6 H 0.055 0.945 7 C -0.093 4.093 8 N -0.982 5.982 9 Si 0.954 3.046 10 H -0.295 1.295 11 H -0.301 1.301 12 H -0.279 1.279 13 C 0.147 3.853 14 H 0.096 0.904 15 C -0.127 4.127 16 C -0.110 4.110 17 C -0.133 4.133 18 C 0.087 3.913 19 N -0.587 5.587 20 C 0.533 3.467 21 O -0.484 6.484 22 C 0.130 3.870 23 C -0.193 4.193 24 C 0.165 3.835 25 N -0.513 5.513 26 C 0.329 3.671 27 C -0.119 4.119 28 C -0.144 4.144 29 C -0.144 4.144 30 N -0.485 5.485 31 H 0.051 0.949 32 H 0.031 0.969 33 H 0.067 0.933 34 H 0.368 0.632 35 H 0.239 0.761 36 H 0.036 0.964 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.085 0.915 40 H 0.099 0.901 41 H 0.032 0.968 42 H 0.082 0.918 43 H 0.124 0.876 44 H 0.146 0.854 45 H 0.211 0.789 46 H 0.143 0.857 47 H 0.097 0.903 48 H 0.124 0.876 49 H 0.127 0.873 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.000 2.677 -21.139 23.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.055 3.945 3 H 0.076 0.924 4 N -0.347 5.347 5 C -0.292 4.292 6 H 0.073 0.927 7 C -0.282 4.282 8 N -0.637 5.637 9 Si 0.786 3.214 10 H -0.223 1.223 11 H -0.229 1.229 12 H -0.205 1.205 13 C 0.043 3.957 14 H 0.114 0.886 15 C -0.166 4.166 16 C -0.147 4.147 17 C -0.171 4.171 18 C -0.034 4.034 19 N -0.321 5.321 20 C 0.317 3.683 21 O -0.356 6.356 22 C -0.016 4.016 23 C -0.216 4.216 24 C -0.002 4.002 25 N -0.227 5.227 26 C 0.063 3.937 27 C -0.139 4.139 28 C -0.181 4.181 29 C -0.182 4.182 30 N -0.202 5.202 31 H 0.070 0.930 32 H 0.050 0.950 33 H 0.086 0.914 34 H 0.203 0.797 35 H 0.048 0.952 36 H 0.055 0.945 37 H 0.099 0.901 38 H 0.088 0.912 39 H 0.104 0.896 40 H 0.117 0.883 41 H 0.050 0.950 42 H 0.100 0.900 43 H 0.141 0.859 44 H 0.163 0.837 45 H 0.227 0.773 46 H 0.161 0.839 47 H 0.116 0.884 48 H 0.142 0.858 49 H 0.145 0.855 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 10.020 2.905 -21.363 23.774 hybrid contribution -0.476 0.157 2.733 2.778 sum 9.543 3.061 -18.631 21.155 Atomic orbital electron populations 1.22423 0.98092 1.01133 1.00446 1.20825 0.91516 0.96628 0.85550 0.92373 1.42537 1.77202 1.09210 1.05719 1.19251 1.29750 0.92677 0.87543 0.92659 1.25167 1.05744 0.96871 1.00449 1.69801 1.55823 1.09889 1.28211 0.85367 0.76540 0.77913 0.81543 1.22304 1.22867 1.20462 1.21645 0.79157 0.96377 0.98479 0.88621 1.21910 1.01358 0.94511 0.98782 1.21494 0.94824 1.00494 0.97893 1.21954 0.96972 0.96475 1.01713 1.22713 1.00422 0.90297 0.89985 1.47803 1.07535 1.44277 1.32437 1.18310 0.85220 0.82021 0.82777 1.91095 1.65715 1.51079 1.27674 1.21962 0.95389 0.93721 0.90554 1.23046 0.96855 1.00122 1.01618 1.23801 0.91794 0.90686 0.93931 1.68139 1.39782 1.12754 1.02024 1.22951 0.85798 0.89647 0.95303 1.20819 0.97527 1.04710 0.90807 1.23103 0.89773 1.02061 1.03191 1.23065 1.01626 0.93618 0.99912 1.68261 1.12609 1.18029 1.21301 0.93047 0.94966 0.91368 0.79745 0.95167 0.94526 0.90054 0.91195 0.89645 0.88259 0.94952 0.89973 0.85913 0.83658 0.77290 0.83918 0.88429 0.85810 0.85507 0.89784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.89 9.41 71.98 0.68 -5.21 16 2 C 0.16 6.84 1.88 44.99 0.08 6.93 16 3 H 0.06 2.73 5.83 -9.43 -0.05 2.68 16 4 N -0.71 -36.94 3.71 -322.95 -1.20 -38.14 16 5 C -0.16 -9.37 8.03 84.03 0.68 -8.69 16 6 H 0.06 3.31 7.83 -2.91 -0.02 3.28 16 7 C -0.09 -5.68 5.50 84.86 0.47 -5.21 16 8 N -0.98 -63.40 13.06 21.65 0.28 -63.12 16 9 Si 0.95 49.97 29.55 68.60 2.03 52.00 16 10 H -0.29 -15.23 7.11 99.48 0.71 -14.52 16 11 H -0.30 -15.88 7.11 99.48 0.71 -15.17 16 12 H -0.28 -14.10 7.11 99.48 0.71 -13.39 16 13 C 0.15 4.90 2.71 44.98 0.12 5.02 16 14 H 0.10 2.65 8.13 -2.39 -0.02 2.63 16 15 C -0.13 -4.02 4.89 30.67 0.15 -3.87 16 16 C -0.11 -2.59 5.88 30.62 0.18 -2.41 16 17 C -0.13 -3.28 6.08 30.67 0.19 -3.10 16 18 C 0.09 2.33 5.87 86.36 0.51 2.83 16 19 N -0.59 -20.12 2.97 -797.70 -2.37 -22.49 16 20 C 0.53 21.52 7.40 86.97 0.64 22.16 16 21 O -0.48 -23.46 9.34 -3.66 -0.03 -23.50 16 22 C 0.13 4.55 6.52 41.99 0.27 4.82 16 23 C -0.19 -6.26 9.72 22.71 0.22 -6.04 16 24 C 0.16 4.12 11.31 84.76 0.96 5.08 16 25 N -0.51 -12.96 9.33 -187.89 -1.75 -14.71 16 26 C 0.33 8.35 7.31 138.79 1.01 9.37 16 27 C -0.12 -2.08 6.23 -11.54 -0.07 -2.15 16 28 C -0.14 -1.95 10.01 30.62 0.31 -1.65 16 29 C -0.14 -1.94 10.24 30.62 0.31 -1.63 16 30 N -0.48 -14.11 6.39 -177.08 -1.13 -15.24 16 31 H 0.05 1.79 6.58 -2.39 -0.02 1.77 16 32 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.37 20.79 5.50 -92.70 -0.51 20.28 16 35 H 0.24 15.22 8.31 -92.71 -0.77 14.45 16 36 H 0.04 1.50 5.96 -2.39 -0.01 1.49 16 37 H 0.08 2.37 6.83 -2.39 -0.02 2.35 16 38 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 43 H 0.12 3.44 4.21 -37.20 -0.16 3.28 16 44 H 0.15 5.16 7.80 -2.91 -0.02 5.13 16 45 H 0.21 3.50 8.06 -2.91 -0.02 3.48 16 46 H 0.14 2.08 8.14 -2.39 -0.02 2.06 16 47 H 0.10 1.60 7.54 -2.39 -0.02 1.58 16 48 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 49 H 0.13 1.10 8.14 -2.39 -0.02 1.08 16 50 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -75.90 386.80 2.79 -73.11 By element: Atomic # 1 Polarization: 35.57 SS G_CDS: 0.26 Total: 35.83 kcal Atomic # 6 Polarization: 9.55 SS G_CDS: 6.71 Total: 16.25 kcal Atomic # 7 Polarization: -147.53 SS G_CDS: -6.17 Total: -153.70 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: -0.03 Total: -23.50 kcal Atomic # 14 Polarization: 49.97 SS G_CDS: 2.03 Total: 52.00 kcal Total: -75.90 2.79 -73.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316882519.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.165 kcal (2) G-P(sol) polarization free energy of solvation -75.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds