Wall clock time and date at job start Wed Apr 1 2020 03:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.46980 * 2 1 4 4 N 1.46495 * 109.47536 * 239.99997 * 2 1 3 5 5 C 1.36937 * 120.00219 * 84.99587 * 4 2 1 6 6 H 1.07997 * 119.99570 * 0.02562 * 5 4 2 7 7 C 1.38808 * 119.99995 * 180.27414 * 5 4 2 8 8 N 1.31619 * 119.99999 * 179.72646 * 7 5 4 9 9 Si 1.86795 * 120.00084 * 359.73285 * 7 5 4 10 10 H 1.48499 * 109.47414 * 89.99440 * 9 7 5 11 11 H 1.48507 * 109.47015 * 209.99704 * 9 7 5 12 12 H 1.48504 * 109.47327 * 329.99517 * 9 7 5 13 13 C 1.53002 * 109.47181 * 119.99599 * 2 1 3 14 14 H 1.09005 * 109.58505 * 302.34869 * 13 2 1 15 15 C 1.53197 * 109.58629 * 62.76827 * 13 2 1 16 16 C 1.53033 * 109.31567 * 174.42295 * 15 13 2 17 17 C 1.53044 * 109.53649 * 298.64077 * 16 15 13 18 18 C 1.53187 * 109.31536 * 61.36310 * 17 16 15 19 19 N 1.46918 * 109.58742 * 182.05987 * 13 2 1 20 20 C 1.34775 * 120.63323 * 6.63258 * 19 13 2 21 21 O 1.21482 * 119.99787 * 3.33381 * 20 19 13 22 22 C 1.48453 * 120.00119 * 183.34557 * 20 19 13 23 23 C 1.39530 * 120.55323 * 156.42099 * 22 20 19 24 24 C 1.38758 * 118.26573 * 179.97438 * 23 22 20 25 25 N 1.32209 * 119.14954 * 359.97438 * 24 23 22 26 26 C 1.31878 * 121.03100 * 359.97438 * 25 24 23 27 27 C 1.50703 * 119.03698 * 180.02562 * 26 25 24 28 28 C 1.52999 * 117.50239 * 8.62351 * 27 26 25 29 29 C 1.52992 * 117.50101 * 299.99807 * 27 26 25 30 30 N 1.31582 * 121.92030 * 359.74185 * 26 25 24 31 31 H 1.09000 * 109.47098 * 294.61303 * 1 2 3 32 32 H 1.09007 * 109.46610 * 54.61390 * 1 2 3 33 33 H 1.09001 * 109.46789 * 174.61001 * 1 2 3 34 34 H 0.97003 * 120.00040 * 265.00487 * 4 2 1 35 35 H 0.97003 * 120.00138 * 180.02562 * 8 7 5 36 36 H 1.09001 * 109.49655 * 294.38001 * 15 13 2 37 37 H 1.09002 * 109.49443 * 54.47072 * 15 13 2 38 38 H 1.08997 * 109.46521 * 178.61916 * 16 15 13 39 39 H 1.09004 * 109.44836 * 58.65175 * 16 15 13 40 40 H 1.09002 * 109.49858 * 301.40697 * 17 16 15 41 41 H 1.09005 * 109.49764 * 181.31730 * 17 16 15 42 42 H 1.08999 * 109.58731 * 185.57619 * 18 17 16 43 43 H 1.09002 * 109.70580 * 65.22254 * 18 17 16 44 44 H 1.08001 * 120.86684 * 359.94528 * 23 22 20 45 45 H 1.08003 * 120.42704 * 180.02562 * 24 23 22 46 46 H 1.09003 * 115.54743 * 154.33101 * 27 26 25 47 47 H 1.09007 * 117.49132 * 359.97438 * 28 27 26 48 48 H 1.08996 * 117.50384 * 145.01785 * 28 27 26 49 49 H 1.08997 * 117.50325 * 214.98406 * 29 27 26 50 50 H 1.09005 * 117.49682 * 0.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0185 -0.6906 -1.1961 5 6 2.1493 -0.0075 -2.3757 6 1 1.8927 1.0404 -2.4241 7 6 2.6066 -0.6633 -3.5104 8 7 2.7272 -0.0080 -4.6455 9 14 3.0509 -2.4757 -3.4265 10 1 1.8520 -3.2942 -3.7394 11 1 4.1217 -2.7690 -4.4127 12 1 3.5322 -2.8047 -2.0607 13 6 2.0401 -0.7212 1.2493 14 1 1.6438 -0.2336 2.1400 15 6 1.5886 -2.1848 1.2177 16 6 2.2164 -2.9337 2.3954 17 6 3.7413 -2.8957 2.2717 18 6 4.2172 -1.4403 2.3153 19 7 3.5084 -0.6797 1.2770 20 6 4.1923 0.0427 0.3677 21 8 3.5941 0.7157 -0.4477 22 6 5.6766 0.0156 0.3623 23 6 6.3874 0.3224 -0.7985 24 6 7.7736 0.2830 -0.7500 25 7 8.3692 -0.0408 0.3850 26 6 7.6669 -0.3243 1.4646 27 6 8.3924 -0.6872 2.7347 28 6 9.9120 -0.5105 2.7556 29 6 9.3056 -1.9142 2.7008 30 7 6.3515 -0.2943 1.4666 31 1 -0.3633 0.4280 0.9343 32 1 -0.3633 0.5952 -0.8379 33 1 -0.3633 -1.0231 -0.0965 34 1 2.2492 -1.6318 -1.1525 35 1 3.0465 -0.4664 -5.4386 36 1 0.5023 -2.2321 1.2938 37 1 1.9085 -2.6440 0.2824 38 1 1.8773 -3.9695 2.3894 39 1 1.9159 -2.4586 3.3293 40 1 4.0411 -3.3483 1.3265 41 1 4.1873 -3.4492 3.0981 42 1 5.2903 -1.4009 2.1287 43 1 4.0006 -1.0120 3.2940 44 1 5.8721 0.5834 -1.7111 45 1 8.3584 0.5146 -1.6280 46 1 7.8496 -0.4892 3.6590 47 1 10.3870 -0.1322 1.8504 48 1 10.3693 -0.1960 3.6937 49 1 9.3641 -2.5232 3.6029 50 1 9.3821 -2.4588 1.7597 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316882524.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:30 Heat of formation + Delta-G solvation = 111.148455 kcal Electronic energy + Delta-G solvation = -32439.383532 eV Core-core repulsion = 28470.386651 eV Total energy + Delta-G solvation = -3968.996881 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.39624 -39.98612 -37.38191 -36.84645 -35.47227 -33.86883 -32.36781 -32.13508 -31.67060 -29.98883 -28.43508 -26.25268 -25.12861 -24.24480 -23.96191 -22.97857 -22.55985 -21.83241 -20.75572 -19.91853 -18.94742 -17.78375 -17.53900 -16.92156 -15.86934 -15.69809 -15.48390 -15.32280 -14.76971 -14.63082 -14.44263 -14.31764 -14.06381 -13.72790 -13.63010 -13.47795 -13.01350 -12.75154 -12.45644 -12.31369 -12.19819 -11.94176 -11.73623 -11.55778 -11.34974 -11.26519 -11.08806 -10.88683 -10.83959 -10.72593 -10.67912 -10.65430 -10.60412 -10.27447 -10.16283 -9.99665 -9.35638 -9.31505 -9.08310 -8.80155 -8.37863 -8.06192 -6.95942 -5.56055 -2.85117 0.68525 0.89513 3.07599 3.17782 3.40523 3.43825 3.47575 3.49878 3.68458 4.01873 4.06724 4.53610 4.65225 4.72954 4.76639 4.79870 4.93577 5.01749 5.02757 5.08157 5.15839 5.28123 5.42389 5.45164 5.50677 5.54536 5.58821 5.69232 5.71233 5.73643 5.76566 5.86902 5.92881 5.98956 6.04233 6.07092 6.10286 6.18424 6.23426 6.33717 6.37185 6.44936 6.52528 6.66452 6.87348 6.93246 6.99551 7.29443 7.82118 7.97006 8.24175 8.60945 8.73894 9.42098 10.14395 10.35893 11.64128 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010782 B = 0.004851 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2596.209950 B = 5770.525136 C = 7110.445840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.173 3.827 3 H 0.091 0.909 4 N -0.735 5.735 5 C -0.181 4.181 6 H 0.089 0.911 7 C -0.009 4.009 8 N -0.944 5.944 9 Si 0.869 3.131 10 H -0.289 1.289 11 H -0.295 1.295 12 H -0.286 1.286 13 C 0.142 3.858 14 H 0.070 0.930 15 C -0.132 4.132 16 C -0.118 4.118 17 C -0.136 4.136 18 C 0.077 3.923 19 N -0.593 5.593 20 C 0.546 3.454 21 O -0.431 6.431 22 C 0.149 3.851 23 C -0.172 4.172 24 C 0.151 3.849 25 N -0.511 5.511 26 C 0.332 3.668 27 C -0.100 4.100 28 C -0.153 4.153 29 C -0.157 4.157 30 N -0.488 5.488 31 H 0.036 0.964 32 H 0.058 0.942 33 H 0.044 0.956 34 H 0.354 0.646 35 H 0.253 0.747 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.067 0.933 42 H 0.137 0.863 43 H 0.059 0.941 44 H 0.168 0.832 45 H 0.176 0.824 46 H 0.129 0.871 47 H 0.110 0.890 48 H 0.099 0.901 49 H 0.102 0.898 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.679 -3.724 18.779 21.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.063 3.937 3 H 0.108 0.892 4 N -0.378 5.378 5 C -0.312 4.312 6 H 0.107 0.893 7 C -0.201 4.201 8 N -0.596 5.596 9 Si 0.701 3.299 10 H -0.216 1.216 11 H -0.222 1.222 12 H -0.212 1.212 13 C 0.039 3.961 14 H 0.088 0.912 15 C -0.171 4.171 16 C -0.156 4.156 17 C -0.175 4.175 18 C -0.046 4.046 19 N -0.329 5.329 20 C 0.329 3.671 21 O -0.299 6.299 22 C 0.002 3.998 23 C -0.194 4.194 24 C -0.015 4.015 25 N -0.226 5.226 26 C 0.065 3.935 27 C -0.120 4.120 28 C -0.191 4.191 29 C -0.195 4.195 30 N -0.205 5.205 31 H 0.055 0.945 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.188 0.812 35 H 0.063 0.937 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.086 0.914 42 H 0.154 0.846 43 H 0.077 0.923 44 H 0.186 0.814 45 H 0.193 0.807 46 H 0.147 0.853 47 H 0.128 0.872 48 H 0.117 0.883 49 H 0.120 0.880 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 9.770 -3.354 18.934 21.568 hybrid contribution -0.198 -1.473 -0.904 1.740 sum 9.571 -4.827 18.030 20.976 Atomic orbital electron populations 1.22536 0.99371 1.00989 0.99994 1.20700 0.90634 0.98068 0.84257 0.89150 1.42841 1.79205 1.08540 1.07224 1.18983 1.32704 0.95079 0.84407 0.89274 1.24514 1.03421 0.96248 0.95964 1.69676 1.55190 1.34747 0.99956 0.86769 0.78089 0.88722 0.76271 1.21585 1.22226 1.21248 1.21687 0.78647 0.95931 0.99882 0.91172 1.21991 1.00609 0.95635 0.98855 1.21530 0.95431 1.00099 0.98519 1.21954 0.96208 0.97468 1.01851 1.22717 1.01526 0.89777 0.90561 1.47680 1.06127 1.48593 1.30483 1.17820 0.84274 0.83137 0.81879 1.91104 1.65445 1.38609 1.34695 1.22135 0.96113 0.92213 0.89351 1.23150 0.95991 0.99001 1.01263 1.23315 0.92009 0.90608 0.95556 1.67992 1.41920 1.12872 0.99808 1.22165 0.86415 0.91948 0.92941 1.20605 0.92468 1.05201 0.93696 1.23012 0.92860 0.99083 1.04142 1.22983 1.01980 0.90834 1.03712 1.68055 1.08998 1.14734 1.28705 0.94473 0.92323 0.93647 0.81220 0.93674 0.90640 0.91368 0.92304 0.92069 0.92175 0.91427 0.84649 0.92279 0.81431 0.80701 0.85323 0.87193 0.88253 0.87961 0.88581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.98 9.06 37.16 0.34 -2.64 16 2 C 0.17 3.40 1.89 -67.93 -0.13 3.28 16 3 H 0.09 1.99 5.94 -52.07 -0.31 1.68 16 4 N -0.73 -17.38 3.26 -53.43 -0.17 -17.56 16 5 C -0.18 -5.12 8.50 -15.06 -0.13 -5.25 16 6 H 0.09 2.78 8.06 -52.49 -0.42 2.35 16 7 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 8 N -0.94 -30.09 13.97 55.49 0.78 -29.31 16 9 Si 0.87 22.80 27.73 -169.99 -4.71 18.09 16 10 H -0.29 -7.60 7.11 56.52 0.40 -7.19 16 11 H -0.30 -7.89 7.11 56.52 0.40 -7.48 16 12 H -0.29 -7.20 6.52 56.52 0.37 -6.83 16 13 C 0.14 2.30 2.74 -67.60 -0.19 2.12 16 14 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 15 C -0.13 -1.97 4.81 -26.61 -0.13 -2.09 16 16 C -0.12 -1.43 5.88 -26.69 -0.16 -1.59 16 17 C -0.14 -1.71 6.08 -26.61 -0.16 -1.87 16 18 C 0.08 1.05 6.08 -3.71 -0.02 1.03 16 19 N -0.59 -9.89 2.96 -166.10 -0.49 -10.39 16 20 C 0.55 10.50 7.12 -12.05 -0.09 10.42 16 21 O -0.43 -9.78 9.62 5.38 0.05 -9.73 16 22 C 0.15 2.56 6.48 -82.64 -0.54 2.03 16 23 C -0.17 -2.82 9.72 -38.91 -0.38 -3.19 16 24 C 0.15 2.04 11.31 -17.20 -0.19 1.85 16 25 N -0.51 -6.95 9.32 -10.74 -0.10 -7.05 16 26 C 0.33 4.47 7.31 -157.30 -1.15 3.32 16 27 C -0.10 -1.00 6.23 -91.77 -0.57 -1.57 16 28 C -0.15 -1.27 10.01 -26.73 -0.27 -1.54 16 29 C -0.16 -1.31 10.23 -26.74 -0.27 -1.59 16 30 N -0.49 -7.26 6.46 -7.32 -0.05 -7.31 16 31 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.04 0.78 6.93 -51.93 -0.36 0.42 16 34 H 0.35 8.48 3.70 -40.82 -0.15 8.33 16 35 H 0.25 7.78 8.31 -40.82 -0.34 7.44 16 36 H 0.08 1.03 6.94 -51.93 -0.36 0.67 16 37 H 0.07 1.21 6.21 -51.93 -0.32 0.89 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.14 1.92 3.91 -77.78 -0.30 1.62 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.17 3.02 7.90 -52.49 -0.41 2.61 16 45 H 0.18 1.77 8.06 -52.48 -0.42 1.34 16 46 H 0.13 1.13 8.14 -51.93 -0.42 0.71 16 47 H 0.11 1.03 7.54 -51.92 -0.39 0.64 16 48 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 50 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 384.23 15.07 5.79 5.79 Total: -1.00 -33.33 384.23 -10.74 -44.07 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -7.70 Total: 11.05 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: -4.13 Total: 2.35 kcal Atomic # 7 Polarization: -71.58 SS G_CDS: -0.04 Total: -71.62 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.05 Total: -9.73 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -4.71 Total: 18.09 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.33 -10.74 -44.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316882524.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.214 kcal (2) G-P(sol) polarization free energy of solvation -33.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds