Wall clock time and date at job start Wed Apr 1 2020 03:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47184 * 2 1 4 4 N 1.46500 * 109.47106 * 119.99522 * 2 1 3 5 5 C 1.36937 * 120.00139 * 274.99842 * 4 2 1 6 6 H 1.08002 * 119.99805 * 0.02562 * 5 4 2 7 7 C 1.38812 * 119.99657 * 180.02562 * 5 4 2 8 8 N 1.31616 * 120.00487 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99672 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47294 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47140 * 120.00052 * 9 7 5 12 12 H 1.48502 * 109.47288 * 240.00203 * 9 7 5 13 13 C 1.53000 * 109.47256 * 239.99759 * 2 1 3 14 14 C 1.53040 * 109.46034 * 180.02562 * 13 2 1 15 15 C 1.53199 * 109.30916 * 178.59977 * 14 13 2 16 16 N 1.46928 * 108.76434 * 54.65897 * 15 14 13 17 17 C 1.34776 * 120.62896 * 126.40454 * 16 15 14 18 18 O 1.21542 * 120.00157 * 354.34560 * 17 16 15 19 19 C 1.47835 * 119.99502 * 174.34799 * 17 16 15 20 20 C 1.39948 * 120.94284 * 324.72124 * 19 17 16 21 21 N 1.32151 * 118.92444 * 179.69810 * 20 19 17 22 22 C 1.31866 * 120.96400 * 0.61314 * 21 20 19 23 23 C 1.50699 * 118.95136 * 179.67813 * 22 21 20 24 24 C 1.53006 * 117.49784 * 8.59983 * 23 22 21 25 25 C 1.53000 * 60.00093 * 252.50907 * 24 23 22 26 26 N 1.31866 * 122.09610 * 359.65805 * 22 21 20 27 27 C 1.32148 * 120.96881 * 0.02562 * 26 22 21 28 28 C 1.46931 * 118.73709 * 306.37957 * 16 15 14 29 29 C 1.53041 * 109.45625 * 59.97217 * 13 2 1 30 30 H 1.09003 * 109.47131 * 300.00287 * 1 2 3 31 31 H 1.09001 * 109.47125 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47325 * 60.00232 * 1 2 3 33 33 H 0.97003 * 119.99649 * 95.00093 * 4 2 1 34 34 H 0.97000 * 120.00225 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.45493 * 300.00103 * 13 2 1 36 36 H 1.08996 * 109.49950 * 298.56583 * 14 13 2 37 37 H 1.08995 * 109.49620 * 58.66575 * 14 13 2 38 38 H 1.08993 * 109.59653 * 294.86949 * 15 14 13 39 39 H 1.08999 * 109.70185 * 174.50712 * 15 14 13 40 40 H 1.08004 * 120.53507 * 359.97438 * 20 19 17 41 41 H 1.08997 * 115.55446 * 154.30680 * 23 22 21 42 42 H 1.09001 * 117.49797 * 0.02562 * 24 23 22 43 43 H 1.08999 * 117.49937 * 145.01667 * 24 23 22 44 44 H 1.08996 * 117.49970 * 252.50945 * 25 24 23 45 45 H 1.09002 * 117.49330 * 107.48781 * 25 24 23 46 46 H 1.08005 * 120.53249 * 179.97438 * 27 26 22 47 47 H 1.09003 * 109.58797 * 293.82392 * 28 16 15 48 48 H 1.08998 * 109.58688 * 173.39690 * 28 16 15 49 49 H 1.09000 * 109.49771 * 301.33714 * 29 13 2 50 50 H 1.08992 * 109.50245 * 61.40269 * 29 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1491 -0.0073 2.3758 6 1 1.8919 1.0405 2.4242 7 6 2.6123 -0.6615 3.5090 8 7 2.9263 -1.9383 3.4498 9 14 2.7901 0.2703 5.1183 10 1 2.3741 1.6821 4.9214 11 1 1.9299 -0.3590 6.1523 12 1 4.2071 0.2284 5.5606 13 6 2.0400 -0.7213 -1.2492 14 6 3.5704 -0.7217 -1.2486 15 6 4.0773 -1.4750 -2.4825 16 7 3.4747 -0.8771 -3.6818 17 6 4.2483 -0.4584 -4.7030 18 8 5.4588 -0.4784 -4.5963 19 6 3.6242 0.0252 -5.9529 20 6 2.4442 -0.5503 -6.4375 21 7 1.9174 -0.0829 -7.5557 22 6 2.4937 0.9014 -8.2175 23 6 1.8576 1.3944 -9.4916 24 6 0.4676 0.8585 -9.8407 25 6 1.6896 0.3888 -10.6325 26 7 3.6085 1.4683 -7.7997 27 6 4.2001 1.0674 -6.6881 28 6 2.0128 -0.7449 -3.7469 29 6 1.5291 0.0000 -2.4986 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 -0.8900 33 1 2.2490 -1.6317 1.1527 34 1 3.2496 -2.3956 4.2418 35 1 1.6765 -1.7489 -1.2489 36 1 3.9345 0.3053 -1.2741 37 1 3.9337 -1.2148 -0.3470 38 1 3.7903 -2.5242 -2.4137 39 1 5.1628 -1.3961 -2.5410 40 1 1.9693 -1.3604 -5.9038 41 1 2.0811 2.4270 -9.7598 42 1 0.0131 0.1497 -9.1485 43 1 -0.2236 1.5386 -10.3383 44 1 1.8023 0.7599 -11.6511 45 1 2.0392 -0.6294 -10.4614 46 1 5.1133 1.5365 -6.3526 47 1 1.5575 -1.7347 -3.7812 48 1 1.7362 -0.1820 -4.6383 49 1 0.4394 0.0206 -2.4867 50 1 1.9121 1.0203 -2.5119 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317687757.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:34 Heat of formation + Delta-G solvation = 56.453976 kcal Electronic energy + Delta-G solvation = -29974.296482 eV Core-core repulsion = 26002.927870 eV Total energy + Delta-G solvation = -3971.368611 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.81910 -40.11104 -38.06515 -37.39079 -35.62131 -34.26688 -33.10082 -32.52593 -30.93532 -30.71627 -28.31445 -26.63558 -25.28895 -25.03454 -23.85580 -22.88034 -22.75624 -22.07057 -21.20766 -19.93461 -19.45207 -18.45207 -17.56789 -17.29721 -16.93972 -16.30391 -15.63841 -15.56762 -15.03060 -14.89963 -14.55057 -14.36723 -14.11431 -13.93643 -13.80145 -13.76165 -13.44058 -12.88156 -12.73576 -12.57936 -12.28490 -12.11738 -12.02228 -11.84694 -11.71927 -11.38327 -11.28763 -11.15641 -11.05367 -10.93596 -10.89668 -10.78354 -10.40259 -10.20874 -10.17390 -10.07699 -9.82746 -9.71770 -9.66647 -9.57097 -8.93475 -8.73345 -6.96695 -5.78487 -3.06454 0.06977 0.60846 2.41982 2.71075 3.09660 3.27148 3.41671 3.47844 3.49597 3.52064 3.72606 4.02501 4.12757 4.39838 4.48772 4.54733 4.55313 4.57193 4.66378 4.85505 4.92432 5.02507 5.15253 5.21977 5.26860 5.32588 5.36790 5.38901 5.51529 5.57622 5.63121 5.71203 5.76819 5.83247 5.84943 5.88873 5.99055 6.04076 6.09218 6.26875 6.29293 6.42805 6.45024 6.52469 6.62246 6.77273 6.90518 7.08462 7.17147 7.59107 7.69542 7.87644 8.40393 9.51830 10.09501 10.44123 11.44170 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.022366 B = 0.002124 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.606301 B =13182.546985 C =13795.022788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.178 3.822 3 H 0.044 0.956 4 N -0.722 5.722 5 C -0.235 4.235 6 H 0.069 0.931 7 C -0.014 4.014 8 N -0.933 5.933 9 Si 0.904 3.096 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.292 1.292 13 C -0.090 4.090 14 C -0.122 4.122 15 C 0.111 3.889 16 N -0.598 5.598 17 C 0.568 3.432 18 O -0.531 6.531 19 C -0.242 4.242 20 C 0.183 3.817 21 N -0.519 5.519 22 C 0.365 3.635 23 C -0.109 4.109 24 C -0.151 4.151 25 C -0.153 4.153 26 N -0.516 5.516 27 C 0.208 3.792 28 C 0.094 3.906 29 C -0.129 4.129 30 H 0.051 0.949 31 H 0.045 0.955 32 H 0.037 0.963 33 H 0.383 0.617 34 H 0.254 0.746 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.094 0.906 38 H 0.071 0.929 39 H 0.092 0.908 40 H 0.180 0.820 41 H 0.132 0.868 42 H 0.112 0.888 43 H 0.102 0.898 44 H 0.105 0.895 45 H 0.097 0.903 46 H 0.180 0.820 47 H 0.077 0.923 48 H 0.082 0.918 49 H 0.081 0.919 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.254 3.155 -27.022 27.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.068 3.932 3 H 0.062 0.938 4 N -0.364 5.364 5 C -0.366 4.366 6 H 0.087 0.913 7 C -0.210 4.210 8 N -0.581 5.581 9 Si 0.735 3.265 10 H -0.206 1.206 11 H -0.220 1.220 12 H -0.219 1.219 13 C -0.109 4.109 14 C -0.160 4.160 15 C -0.010 4.010 16 N -0.331 5.331 17 C 0.354 3.646 18 O -0.409 6.409 19 C -0.250 4.250 20 C 0.016 3.984 21 N -0.232 5.232 22 C 0.099 3.901 23 C -0.129 4.129 24 C -0.189 4.189 25 C -0.192 4.192 26 N -0.228 5.228 27 C 0.041 3.959 28 C -0.028 4.028 29 C -0.167 4.167 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.217 0.783 34 H 0.064 0.936 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.112 0.888 38 H 0.089 0.911 39 H 0.110 0.890 40 H 0.197 0.803 41 H 0.150 0.850 42 H 0.130 0.870 43 H 0.121 0.879 44 H 0.123 0.877 45 H 0.115 0.885 46 H 0.197 0.803 47 H 0.095 0.905 48 H 0.100 0.900 49 H 0.099 0.901 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.002 3.606 -27.634 28.154 hybrid contribution 0.514 -0.135 1.969 2.040 sum -3.487 3.471 -25.665 26.132 Atomic orbital electron populations 1.22500 0.99536 1.00754 0.99834 1.20207 0.91572 0.95332 0.86090 0.93760 1.42408 1.78079 1.10616 1.05266 1.19257 1.36151 0.93822 0.87352 0.91296 1.24713 1.02330 0.95977 0.97995 1.69656 1.51119 1.08632 1.28736 0.86163 0.77297 0.78802 0.84206 1.20647 1.21967 1.21920 1.21390 0.95168 0.99908 0.94459 1.21892 0.95653 1.01163 0.97278 1.21832 0.99539 0.96599 0.83045 1.48076 1.07122 1.60276 1.17585 1.17791 0.86474 0.77783 0.82520 1.90804 1.13425 1.54982 1.81671 1.21778 1.00057 1.03024 1.00131 1.23731 0.89177 0.95591 0.89863 1.68192 1.33882 1.13217 1.07917 1.22385 0.87124 0.86787 0.93773 1.20710 1.01108 0.99985 0.91064 1.23058 0.89736 1.03390 1.02695 1.23005 1.02088 0.98723 0.95339 1.68263 1.10278 1.29711 1.14579 1.23444 0.96507 0.89139 0.86763 1.22250 0.79586 1.01218 0.99781 1.22028 1.01339 0.99647 0.93721 0.92997 0.93556 0.94390 0.78321 0.93618 0.91235 0.91915 0.88763 0.91102 0.88955 0.80323 0.85033 0.86996 0.87949 0.87709 0.88472 0.80320 0.90517 0.89996 0.90078 0.91548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.78 9.14 37.16 0.34 -2.45 16 2 C 0.18 3.25 2.47 -67.93 -0.17 3.08 16 3 H 0.04 0.86 8.08 -51.93 -0.42 0.44 16 4 N -0.72 -16.97 4.41 -53.43 -0.24 -17.21 16 5 C -0.23 -6.29 9.93 -15.06 -0.15 -6.44 16 6 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 7 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 8 N -0.93 -27.46 13.06 55.49 0.72 -26.73 16 9 Si 0.90 22.17 29.55 -169.99 -5.02 17.14 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 12 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 13 C -0.09 -1.29 1.79 -90.58 -0.16 -1.45 16 14 C -0.12 -1.84 5.22 -26.61 -0.14 -1.98 16 15 C 0.11 1.44 6.44 -3.71 -0.02 1.42 16 16 N -0.60 -6.97 2.97 -173.88 -0.52 -7.49 16 17 C 0.57 7.24 7.42 -12.33 -0.09 7.15 16 18 O -0.53 -8.52 16.31 5.33 0.09 -8.43 16 19 C -0.24 -2.59 5.31 -104.69 -0.56 -3.15 16 20 C 0.18 1.69 8.67 -16.77 -0.15 1.54 16 21 N -0.52 -5.09 9.32 -10.39 -0.10 -5.18 16 22 C 0.36 3.68 7.31 -157.07 -1.15 2.54 16 23 C -0.11 -0.82 6.23 -91.77 -0.57 -1.39 16 24 C -0.15 -0.90 10.01 -26.73 -0.27 -1.17 16 25 C -0.15 -0.92 10.23 -26.73 -0.27 -1.19 16 26 N -0.52 -5.66 10.31 -10.40 -0.11 -5.77 16 27 C 0.21 2.23 10.92 -16.78 -0.18 2.04 16 28 C 0.09 0.88 4.83 -3.70 -0.02 0.86 16 29 C -0.13 -1.44 5.04 -26.61 -0.13 -1.58 16 30 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.04 0.51 6.40 -51.93 -0.33 0.18 16 33 H 0.38 9.56 7.58 -40.82 -0.31 9.25 16 34 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.09 1.69 7.41 -51.93 -0.38 1.30 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.09 1.31 7.00 -51.93 -0.36 0.94 16 40 H 0.18 1.24 6.14 -52.48 -0.32 0.92 16 41 H 0.13 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.11 0.77 7.53 -51.93 -0.39 0.37 16 43 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 46 H 0.18 1.69 8.05 -52.48 -0.42 1.27 16 47 H 0.08 0.60 8.08 -51.93 -0.42 0.18 16 48 H 0.08 0.67 4.44 -51.93 -0.23 0.44 16 49 H 0.08 0.82 6.36 -51.93 -0.33 0.49 16 50 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 398.34 15.07 6.00 6.00 Total: -1.00 -31.90 398.34 -10.65 -42.55 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -7.70 Total: 7.77 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: -3.79 Total: -2.66 kcal Atomic # 7 Polarization: -62.15 SS G_CDS: -0.23 Total: -62.38 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: 0.09 Total: -8.43 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.90 -10.65 -42.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317687757.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.008 kcal (2) G-P(sol) polarization free energy of solvation -31.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds