Wall clock time and date at job start Wed Apr 1 2020 03:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47184 * 2 1 4 4 N 1.46500 * 109.47106 * 119.99522 * 2 1 3 5 5 C 1.36937 * 120.00139 * 274.99842 * 4 2 1 6 6 H 1.08002 * 119.99805 * 0.02562 * 5 4 2 7 7 C 1.38812 * 119.99657 * 180.02562 * 5 4 2 8 8 N 1.31616 * 120.00487 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99672 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47294 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47140 * 120.00052 * 9 7 5 12 12 H 1.48502 * 109.47288 * 240.00203 * 9 7 5 13 13 C 1.53000 * 109.47256 * 239.99759 * 2 1 3 14 14 C 1.53040 * 109.46034 * 180.02562 * 13 2 1 15 15 C 1.53199 * 109.30916 * 178.59977 * 14 13 2 16 16 N 1.46928 * 108.76434 * 54.65897 * 15 14 13 17 17 C 1.34776 * 120.62896 * 126.40454 * 16 15 14 18 18 O 1.21542 * 120.00157 * 354.34560 * 17 16 15 19 19 C 1.47835 * 119.99502 * 174.34799 * 17 16 15 20 20 C 1.39948 * 120.94284 * 324.72124 * 19 17 16 21 21 N 1.32151 * 118.92444 * 179.69810 * 20 19 17 22 22 C 1.31866 * 120.96400 * 0.61314 * 21 20 19 23 23 C 1.50699 * 118.95136 * 179.67813 * 22 21 20 24 24 C 1.53006 * 117.49784 * 8.59983 * 23 22 21 25 25 C 1.53000 * 60.00093 * 252.50907 * 24 23 22 26 26 N 1.31866 * 122.09610 * 359.65805 * 22 21 20 27 27 C 1.32148 * 120.96881 * 0.02562 * 26 22 21 28 28 C 1.46931 * 118.73709 * 306.37957 * 16 15 14 29 29 C 1.53041 * 109.45625 * 59.97217 * 13 2 1 30 30 H 1.09003 * 109.47131 * 300.00287 * 1 2 3 31 31 H 1.09001 * 109.47125 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47325 * 60.00232 * 1 2 3 33 33 H 0.97003 * 119.99649 * 95.00093 * 4 2 1 34 34 H 0.97000 * 120.00225 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.45493 * 300.00103 * 13 2 1 36 36 H 1.08996 * 109.49950 * 298.56583 * 14 13 2 37 37 H 1.08995 * 109.49620 * 58.66575 * 14 13 2 38 38 H 1.08993 * 109.59653 * 294.86949 * 15 14 13 39 39 H 1.08999 * 109.70185 * 174.50712 * 15 14 13 40 40 H 1.08004 * 120.53507 * 359.97438 * 20 19 17 41 41 H 1.08997 * 115.55446 * 154.30680 * 23 22 21 42 42 H 1.09001 * 117.49797 * 0.02562 * 24 23 22 43 43 H 1.08999 * 117.49937 * 145.01667 * 24 23 22 44 44 H 1.08996 * 117.49970 * 252.50945 * 25 24 23 45 45 H 1.09002 * 117.49330 * 107.48781 * 25 24 23 46 46 H 1.08005 * 120.53249 * 179.97438 * 27 26 22 47 47 H 1.09003 * 109.58797 * 293.82392 * 28 16 15 48 48 H 1.08998 * 109.58688 * 173.39690 * 28 16 15 49 49 H 1.09000 * 109.49771 * 301.33714 * 29 13 2 50 50 H 1.08992 * 109.50245 * 61.40269 * 29 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1491 -0.0073 2.3758 6 1 1.8919 1.0405 2.4242 7 6 2.6123 -0.6615 3.5090 8 7 2.9263 -1.9383 3.4498 9 14 2.7901 0.2703 5.1183 10 1 2.3741 1.6821 4.9214 11 1 1.9299 -0.3590 6.1523 12 1 4.2071 0.2284 5.5606 13 6 2.0400 -0.7213 -1.2492 14 6 3.5704 -0.7217 -1.2486 15 6 4.0773 -1.4750 -2.4825 16 7 3.4747 -0.8771 -3.6818 17 6 4.2483 -0.4584 -4.7030 18 8 5.4588 -0.4784 -4.5963 19 6 3.6242 0.0252 -5.9529 20 6 2.4442 -0.5503 -6.4375 21 7 1.9174 -0.0829 -7.5557 22 6 2.4937 0.9014 -8.2175 23 6 1.8576 1.3944 -9.4916 24 6 0.4676 0.8585 -9.8407 25 6 1.6896 0.3888 -10.6325 26 7 3.6085 1.4683 -7.7997 27 6 4.2001 1.0674 -6.6881 28 6 2.0128 -0.7449 -3.7469 29 6 1.5291 0.0000 -2.4986 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 -0.8900 33 1 2.2490 -1.6317 1.1527 34 1 3.2496 -2.3956 4.2418 35 1 1.6765 -1.7489 -1.2489 36 1 3.9345 0.3053 -1.2741 37 1 3.9337 -1.2148 -0.3470 38 1 3.7903 -2.5242 -2.4137 39 1 5.1628 -1.3961 -2.5410 40 1 1.9693 -1.3604 -5.9038 41 1 2.0811 2.4270 -9.7598 42 1 0.0131 0.1497 -9.1485 43 1 -0.2236 1.5386 -10.3383 44 1 1.8023 0.7599 -11.6511 45 1 2.0392 -0.6294 -10.4614 46 1 5.1133 1.5365 -6.3526 47 1 1.5575 -1.7347 -3.7812 48 1 1.7362 -0.1820 -4.6383 49 1 0.4394 0.0206 -2.4867 50 1 1.9121 1.0203 -2.5119 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317687757.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:33 Heat of formation + Delta-G solvation = 37.773017 kcal Electronic energy + Delta-G solvation = -29975.106549 eV Core-core repulsion = 26002.927870 eV Total energy + Delta-G solvation = -3972.178678 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.61042 -41.07888 -39.23791 -37.95594 -37.00370 -35.14559 -34.59159 -33.57131 -32.31091 -31.85172 -29.92832 -27.54225 -26.28022 -26.07151 -25.39498 -23.97301 -23.21116 -22.99075 -22.13418 -21.24630 -20.57175 -19.34430 -19.06629 -18.22579 -17.94791 -17.28803 -16.80003 -16.50785 -16.20807 -15.72229 -15.67637 -15.49606 -15.34539 -15.15137 -14.90592 -14.74918 -14.60407 -14.24499 -14.03500 -13.57552 -13.45204 -13.29573 -13.01697 -12.86980 -12.80771 -12.72353 -12.34824 -12.31360 -12.22847 -12.10522 -12.03120 -11.92483 -11.81336 -11.49336 -11.41222 -11.32145 -11.27114 -10.99104 -10.88940 -10.48278 -10.37840 -9.75042 -8.94606 -7.92105 -5.17765 -0.71155 -0.14897 1.45699 1.46598 1.47588 1.55460 1.77962 2.39650 2.56660 2.61621 2.84109 3.12307 3.22558 3.33569 3.41857 3.70937 3.73998 3.80794 3.86516 3.91849 3.94208 4.08113 4.10575 4.19874 4.31540 4.35766 4.40149 4.55449 4.58197 4.59637 4.72313 4.79233 4.81533 4.87853 4.91897 4.93785 4.98668 5.09020 5.10738 5.15322 5.19063 5.22753 5.31619 5.34109 5.48296 5.51298 5.61186 5.68236 5.69907 6.22043 6.31469 6.83803 6.89810 7.37774 8.16868 8.38854 9.31249 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.022366 B = 0.002124 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.606301 B =13182.546985 C =13795.022788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.171 3.829 3 H 0.030 0.970 4 N -0.732 5.732 5 C -0.229 4.229 6 H 0.069 0.931 7 C -0.076 4.076 8 N -0.967 5.967 9 Si 0.963 3.037 10 H -0.270 1.270 11 H -0.295 1.295 12 H -0.297 1.297 13 C -0.079 4.079 14 C -0.114 4.114 15 C 0.120 3.880 16 N -0.595 5.595 17 C 0.570 3.430 18 O -0.573 6.573 19 C -0.251 4.251 20 C 0.193 3.807 21 N -0.521 5.521 22 C 0.359 3.641 23 C -0.128 4.128 24 C -0.140 4.140 25 C -0.146 4.146 26 N -0.531 5.531 27 C 0.202 3.798 28 C 0.095 3.905 29 C -0.122 4.122 30 H 0.027 0.973 31 H 0.046 0.954 32 H 0.077 0.923 33 H 0.373 0.627 34 H 0.249 0.751 35 H 0.076 0.924 36 H 0.044 0.956 37 H 0.060 0.940 38 H 0.088 0.912 39 H 0.076 0.924 40 H 0.207 0.793 41 H 0.138 0.862 42 H 0.104 0.896 43 H 0.122 0.878 44 H 0.124 0.876 45 H 0.087 0.913 46 H 0.182 0.818 47 H 0.107 0.893 48 H 0.100 0.900 49 H 0.104 0.896 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.496 3.512 -29.417 30.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.063 3.937 3 H 0.048 0.952 4 N -0.372 5.372 5 C -0.361 4.361 6 H 0.087 0.913 7 C -0.269 4.269 8 N -0.618 5.618 9 Si 0.793 3.207 10 H -0.194 1.194 11 H -0.222 1.222 12 H -0.224 1.224 13 C -0.098 4.098 14 C -0.152 4.152 15 C -0.002 4.002 16 N -0.326 5.326 17 C 0.358 3.642 18 O -0.453 6.453 19 C -0.259 4.259 20 C 0.026 3.974 21 N -0.235 5.235 22 C 0.094 3.906 23 C -0.148 4.148 24 C -0.178 4.178 25 C -0.184 4.184 26 N -0.245 5.245 27 C 0.036 3.964 28 C -0.026 4.026 29 C -0.160 4.160 30 H 0.046 0.954 31 H 0.065 0.935 32 H 0.096 0.904 33 H 0.206 0.794 34 H 0.057 0.943 35 H 0.095 0.905 36 H 0.063 0.937 37 H 0.078 0.922 38 H 0.106 0.894 39 H 0.094 0.906 40 H 0.223 0.777 41 H 0.156 0.844 42 H 0.122 0.878 43 H 0.140 0.860 44 H 0.142 0.858 45 H 0.106 0.894 46 H 0.199 0.801 47 H 0.125 0.875 48 H 0.118 0.882 49 H 0.122 0.878 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.295 4.005 -30.069 30.981 hybrid contribution 1.186 -0.186 2.621 2.883 sum -5.109 3.819 -27.447 28.179 Atomic orbital electron populations 1.22345 0.97577 1.01036 1.00614 1.20468 0.92797 0.94550 0.85916 0.95192 1.42580 1.78316 1.10264 1.06067 1.19569 1.34116 0.93888 0.88530 0.91307 1.25419 1.03512 0.96876 1.01045 1.69791 1.52979 1.09959 1.29076 0.85216 0.76635 0.78201 0.80612 1.19418 1.22243 1.22438 1.21268 0.94177 1.00203 0.94188 1.21726 0.96552 0.99919 0.97007 1.21619 0.98716 0.97196 0.82665 1.48098 1.08223 1.59607 1.16668 1.18045 0.85981 0.77037 0.83148 1.90785 1.15284 1.56702 1.82517 1.21571 1.01009 1.03765 0.99510 1.24123 0.88294 0.95431 0.89531 1.68312 1.33833 1.13275 1.08055 1.22937 0.86783 0.86483 0.94397 1.20889 1.02487 1.00724 0.90730 1.23123 0.89341 1.03125 1.02180 1.23083 1.01702 0.97808 0.95795 1.68325 1.10965 1.30406 1.14768 1.23572 0.96689 0.89311 0.86842 1.22470 0.77822 1.02956 0.99385 1.21982 1.02567 0.98890 0.92583 0.95385 0.93464 0.90432 0.79432 0.94256 0.90533 0.93690 0.92173 0.89357 0.90589 0.77691 0.84382 0.87768 0.85965 0.85764 0.89398 0.80099 0.87523 0.88191 0.87804 0.92395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.92 9.14 71.98 0.66 -4.26 16 2 C 0.17 6.14 2.47 44.99 0.11 6.25 16 3 H 0.03 1.16 8.08 -2.39 -0.02 1.14 16 4 N -0.73 -34.89 4.41 -322.94 -1.42 -36.31 16 5 C -0.23 -12.43 9.93 84.03 0.83 -11.60 16 6 H 0.07 3.67 7.83 -2.91 -0.02 3.65 16 7 C -0.08 -4.34 5.50 84.86 0.47 -3.87 16 8 N -0.97 -58.28 13.06 21.65 0.28 -58.00 16 9 Si 0.96 46.29 29.55 68.60 2.03 48.32 16 10 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 11 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 12 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16 13 C -0.08 -2.16 1.79 -10.77 -0.02 -2.18 16 14 C -0.11 -3.48 5.22 30.67 0.16 -3.32 16 15 C 0.12 3.07 6.44 86.36 0.56 3.62 16 16 N -0.59 -12.85 2.97 -822.30 -2.44 -15.29 16 17 C 0.57 14.05 7.42 86.78 0.64 14.69 16 18 O -0.57 -18.63 16.31 -3.85 -0.06 -18.69 16 19 C -0.25 -5.02 5.31 -19.91 -0.11 -5.12 16 20 C 0.19 3.03 8.67 85.06 0.74 3.76 16 21 N -0.52 -8.97 9.32 -186.80 -1.74 -10.71 16 22 C 0.36 6.65 7.31 138.71 1.01 7.66 16 23 C -0.13 -1.68 6.23 -11.54 -0.07 -1.75 16 24 C -0.14 -1.29 10.01 30.60 0.31 -0.99 16 25 C -0.15 -1.40 10.23 30.60 0.31 -1.08 16 26 N -0.53 -11.17 10.31 -186.80 -1.93 -13.10 16 27 C 0.20 4.22 10.92 85.06 0.93 5.15 16 28 C 0.10 1.43 4.83 86.36 0.42 1.84 16 29 C -0.12 -2.35 5.04 30.67 0.15 -2.19 16 30 H 0.03 0.99 8.14 -2.39 -0.02 0.98 16 31 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.08 1.82 6.40 -2.39 -0.02 1.81 16 33 H 0.37 19.09 7.58 -92.71 -0.70 18.39 16 34 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 35 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.06 2.26 7.41 -2.39 -0.02 2.24 16 38 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.08 2.22 7.00 -2.39 -0.02 2.20 16 40 H 0.21 1.99 6.14 -2.91 -0.02 1.97 16 41 H 0.14 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.10 1.16 7.53 -2.39 -0.02 1.14 16 43 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.18 3.50 8.05 -2.91 -0.02 3.47 16 47 H 0.11 1.09 8.08 -2.39 -0.02 1.07 16 48 H 0.10 1.23 4.44 -2.39 -0.01 1.22 16 49 H 0.10 1.60 6.36 -2.39 -0.02 1.58 16 50 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -71.25 398.34 2.08 -69.18 By element: Atomic # 1 Polarization: 27.74 SS G_CDS: 0.26 Total: 28.00 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: 7.11 Total: 6.62 kcal Atomic # 7 Polarization: -126.17 SS G_CDS: -7.25 Total: -133.42 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -0.06 Total: -18.69 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -71.25 2.08 -69.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317687757.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.950 kcal (2) G-P(sol) polarization free energy of solvation -71.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds