Wall clock time and date at job start Wed Apr 1 2020 03:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42899 * 109.46984 * 2 1 4 4 C 1.36018 * 116.99965 * 180.02562 * 3 2 1 5 5 C 1.38697 * 120.49445 * 359.97438 * 4 3 2 6 6 C 1.38858 * 118.45665 * 180.02562 * 5 4 3 7 7 C 1.38004 * 119.36796 * 359.97438 * 6 5 4 8 8 N 1.32018 * 120.95568 * 359.74766 * 7 6 5 9 9 C 1.32299 * 121.67432 * 0.52311 * 8 7 6 10 10 N 1.39254 * 119.73287 * 179.75529 * 9 8 7 11 11 C 1.46960 * 110.99793 * 359.72450 * 10 9 8 12 12 C 1.53048 * 109.36369 * 183.18862 * 11 10 9 13 13 N 1.46958 * 109.36467 * 301.59907 * 12 11 10 14 14 C 1.46900 * 111.00070 * 183.18566 * 13 12 11 15 15 C 1.53002 * 109.46891 * 75.76134 * 14 13 12 16 16 H 1.09000 * 109.46909 * 304.79956 * 15 14 13 17 17 C 1.47199 * 109.47346 * 64.79726 * 15 14 13 18 18 N 9.34680 * 96.15575 * 334.27828 * 2 1 3 19 19 C 1.53002 * 109.47279 * 184.79883 * 15 14 13 20 20 C 1.50696 * 109.47325 * 174.99438 * 19 15 14 21 21 H 1.08006 * 120.00079 * 0.02562 * 20 19 15 22 22 C 1.37875 * 120.00045 * 179.97438 * 20 19 15 23 23 N 1.31513 * 120.00023 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99983 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47139 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.46950 * 120.00135 * 24 22 20 27 27 H 1.48500 * 109.47016 * 240.00040 * 24 22 20 28 28 C 1.46960 * 110.88094 * 59.32108 * 13 12 11 29 29 C 1.46958 * 111.00109 * 123.52403 * 10 9 8 30 30 H 1.09000 * 109.47011 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46816 * 299.99852 * 1 2 3 32 32 H 1.08996 * 109.47530 * 60.00488 * 1 2 3 33 33 H 1.08999 * 109.47235 * 239.99908 * 2 1 3 34 34 H 1.09001 * 109.47206 * 119.99852 * 2 1 3 35 35 H 1.08001 * 120.77355 * 359.97438 * 5 4 3 36 36 H 1.08003 * 120.31194 * 180.02562 * 6 5 4 37 37 H 1.08002 * 119.52455 * 180.02562 * 7 6 5 38 38 H 1.09003 * 109.48755 * 63.22342 * 11 10 9 39 39 H 1.08993 * 109.50629 * 303.16518 * 11 10 9 40 40 H 1.08999 * 109.48911 * 181.63537 * 12 11 10 41 41 H 1.09000 * 109.48696 * 61.56445 * 12 11 10 42 42 H 1.08995 * 109.47396 * 315.76046 * 14 13 12 43 43 H 1.08997 * 109.47439 * 195.75480 * 14 13 12 44 44 H 1.08997 * 109.46911 * 294.99747 * 19 15 14 45 45 H 1.09000 * 109.46646 * 54.99613 * 19 15 14 46 46 H 0.96998 * 119.99948 * 180.02562 * 23 22 20 47 47 H 1.09003 * 109.48755 * 60.64470 * 28 13 12 48 48 H 1.09002 * 109.49103 * 180.71512 * 28 13 12 49 49 H 1.09007 * 109.48692 * 296.78022 * 29 10 9 50 50 H 1.09002 * 109.48562 * 56.81910 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3548 1.5255 -0.0005 5 6 4.2091 0.4329 -0.0005 6 6 5.5784 0.6637 -0.0005 7 6 6.0459 1.9622 -0.0011 8 7 5.2107 2.9846 -0.0066 9 6 3.8993 2.8104 -0.0015 10 7 3.0554 3.9181 -0.0025 11 6 3.8276 5.1684 -0.0029 12 6 2.8677 6.3578 0.0763 13 7 1.9419 6.3136 -1.0641 14 6 1.0516 7.4821 -1.0651 15 6 1.8240 8.7112 -1.5485 16 1 2.7135 8.8465 -0.9331 17 6 2.2231 8.5192 -2.9522 18 7 2.5323 8.3721 -4.0331 19 6 0.9331 9.9500 -1.4364 20 6 1.7312 11.1769 -1.7952 21 1 2.7699 11.0825 -2.0757 22 6 1.1351 12.4198 -1.7666 23 7 -0.1298 12.5347 -1.4256 24 14 2.1243 13.9405 -2.2122 25 1 3.5132 13.5441 -2.5572 26 1 1.4981 14.6142 -3.3781 27 1 2.1476 14.8721 -1.0559 28 6 1.1696 5.0632 -1.0637 29 6 2.1296 3.8739 -1.1429 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5137 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.8185 -0.5740 0.0003 36 1 6.2709 -0.1651 -0.0010 37 1 7.1104 2.1446 -0.0016 38 1 4.4129 5.2340 -0.9201 39 1 4.4967 5.1832 0.8574 40 1 3.4367 7.2870 0.0469 41 1 2.3016 6.3068 1.0064 42 1 0.6829 7.6588 -0.0548 43 1 0.2096 7.2968 -1.7320 44 1 0.0888 9.8533 -2.1189 45 1 0.5655 10.0418 -0.4144 46 1 -0.5493 13.4091 -1.4059 47 1 0.5843 4.9976 -0.1465 48 1 0.5007 5.0486 -1.9242 49 1 2.6957 3.9247 -2.0731 50 1 1.5608 2.9444 -1.1137 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364518551.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:29 Heat of formation + Delta-G solvation = 41.153619 kcal Electronic energy + Delta-G solvation = -29984.811685 eV Core-core repulsion = 26012.779601 eV Total energy + Delta-G solvation = -3972.032085 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.29046 -39.22082 -38.47442 -36.80070 -35.13609 -33.54932 -32.59962 -32.09190 -31.36129 -30.92859 -29.72951 -27.46598 -25.54364 -25.06310 -23.48299 -22.98476 -22.47948 -21.90266 -21.60299 -19.84152 -18.62826 -17.54323 -17.17253 -16.61196 -16.52185 -16.40958 -15.54903 -15.15702 -14.96052 -14.79652 -14.57536 -14.48719 -14.29702 -14.14580 -13.77424 -13.59731 -13.06028 -13.04354 -12.89198 -12.71077 -12.58876 -12.36866 -12.21415 -11.90635 -11.75205 -11.48685 -11.30778 -11.25476 -11.18324 -11.03456 -11.00919 -10.88690 -10.61581 -10.45975 -10.25906 -10.11836 -9.83604 -9.49611 -9.39134 -9.17630 -8.43317 -8.17229 -7.96376 -6.07005 -4.09668 0.87774 0.97971 2.72951 3.26605 3.30616 3.38774 3.43858 3.60732 3.79786 3.90593 4.02702 4.23730 4.38060 4.44154 4.48357 4.54899 4.64948 4.76659 4.81223 4.90884 4.95515 5.02519 5.12048 5.19272 5.23328 5.29309 5.31329 5.38013 5.46390 5.54586 5.61757 5.66470 5.70283 5.73142 5.78928 5.87026 5.91194 5.97647 6.04190 6.10477 6.20761 6.40690 6.54029 6.59845 6.69960 7.11916 7.20258 7.23435 7.46480 7.56753 7.77292 7.88869 8.26730 8.65056 8.95489 9.55733 11.03975 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.018835 B = 0.002209 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.232050 B =12673.006279 C =13524.549869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.050 3.950 3 O -0.298 6.298 4 C 0.066 3.934 5 C -0.149 4.149 6 C -0.166 4.166 7 C 0.087 3.913 8 N -0.485 5.485 9 C 0.299 3.701 10 N -0.468 5.468 11 C 0.071 3.929 12 C 0.051 3.949 13 N -0.545 5.545 14 C 0.063 3.937 15 C 0.012 3.988 16 H 0.099 0.901 17 C 0.259 3.741 18 N -0.483 5.483 19 C 0.031 3.969 20 C -0.524 4.524 21 H 0.057 0.943 22 C 0.062 3.938 23 N -0.892 5.892 24 Si 0.891 3.109 25 H -0.272 1.272 26 H -0.284 1.284 27 H -0.283 1.283 28 C 0.060 3.940 29 C 0.059 3.941 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.138 0.862 36 H 0.135 0.865 37 H 0.158 0.842 38 H 0.058 0.942 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.045 0.955 42 H 0.058 0.942 43 H 0.078 0.922 44 H 0.025 0.975 45 H 0.037 0.963 46 H 0.261 0.739 47 H 0.046 0.954 48 H 0.083 0.917 49 H 0.049 0.951 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.670 -29.354 7.459 30.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.025 4.025 3 O -0.211 6.211 4 C 0.016 3.984 5 C -0.175 4.175 6 C -0.188 4.188 7 C -0.069 4.069 8 N -0.199 5.199 9 C 0.064 3.936 10 N -0.186 5.186 11 C -0.056 4.056 12 C -0.077 4.077 13 N -0.269 5.269 14 C -0.065 4.065 15 C -0.010 4.010 16 H 0.117 0.883 17 C -0.058 4.058 18 N -0.160 5.160 19 C -0.008 4.008 20 C -0.562 4.562 21 H 0.075 0.925 22 C -0.140 4.140 23 N -0.531 5.531 24 Si 0.718 3.282 25 H -0.197 1.197 26 H -0.210 1.210 27 H -0.209 1.209 28 C -0.068 4.068 29 C -0.066 4.066 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.156 0.844 36 H 0.153 0.847 37 H 0.175 0.825 38 H 0.077 0.923 39 H 0.106 0.894 40 H 0.109 0.891 41 H 0.063 0.937 42 H 0.076 0.924 43 H 0.096 0.904 44 H 0.044 0.956 45 H 0.055 0.945 46 H 0.071 0.929 47 H 0.064 0.936 48 H 0.101 0.899 49 H 0.067 0.933 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 5.106 -28.410 5.831 29.448 hybrid contribution 0.154 -0.171 0.372 0.437 sum 5.260 -28.580 6.204 29.715 Atomic orbital electron populations 1.21767 0.92394 1.02854 1.03872 1.22831 0.96261 0.82277 1.01120 1.86227 1.17665 1.28678 1.88482 1.19429 0.83720 0.93342 1.01947 1.21528 0.94057 0.98272 1.03672 1.21812 0.95112 0.98563 1.03267 1.22442 0.99381 0.87810 0.97285 1.67733 1.01632 1.35473 1.15106 1.19379 0.88167 0.88449 0.97559 1.59333 1.17006 1.01264 1.40948 1.22088 0.94644 0.85983 1.02906 1.22314 0.95033 0.98367 0.91980 1.62202 1.19731 1.02097 1.42914 1.22223 0.94659 0.88626 1.01009 1.19214 1.00962 0.96657 0.84157 0.88304 1.28769 0.91945 0.90370 0.94727 1.80879 1.10359 1.11530 1.13195 1.19176 0.94183 0.88714 0.98693 1.21185 0.97299 0.91348 1.46346 0.92456 1.24953 0.94895 0.99132 0.95041 1.69948 1.10952 1.24084 1.48107 0.86547 0.80472 0.83019 0.78115 1.19666 1.21002 1.20871 1.22126 0.94787 0.88400 1.01479 1.22408 0.94333 1.00031 0.89867 0.90435 0.91276 0.91328 0.92227 0.92159 0.84437 0.84740 0.82504 0.92342 0.89424 0.89133 0.93678 0.92426 0.90362 0.95621 0.94457 0.92894 0.93600 0.89859 0.93295 0.88207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 10.28 37.16 0.38 -0.39 16 2 C 0.05 0.31 5.48 37.16 0.20 0.51 16 3 O -0.30 -2.90 7.42 -19.80 -0.15 -3.04 16 4 C 0.07 0.70 6.43 -38.92 -0.25 0.45 16 5 C -0.15 -1.23 9.14 -39.18 -0.36 -1.58 16 6 C -0.17 -1.28 10.10 -39.44 -0.40 -1.68 16 7 C 0.09 0.82 11.17 -17.56 -0.20 0.62 16 8 N -0.48 -5.96 8.71 -12.29 -0.11 -6.06 16 9 C 0.30 3.73 6.42 -154.71 -0.99 2.74 16 10 N -0.47 -5.98 4.66 -172.85 -0.81 -6.78 16 11 C 0.07 0.92 4.79 -3.77 -0.02 0.90 16 12 C 0.05 0.67 5.43 -3.77 -0.02 0.65 16 13 N -0.54 -7.67 4.34 -234.47 -1.02 -8.69 16 14 C 0.06 0.96 4.36 -3.82 -0.02 0.94 16 15 C 0.01 0.23 2.27 -93.41 -0.21 0.02 16 16 H 0.10 1.76 6.74 -51.93 -0.35 1.41 16 17 C 0.26 5.53 13.66 -20.83 -0.28 5.25 16 18 N -0.48 -11.21 18.52 42.07 0.78 -10.43 16 19 C 0.03 0.72 4.42 -27.88 -0.12 0.60 16 20 C -0.52 -14.06 8.60 -34.44 -0.30 -14.36 16 21 H 0.06 1.54 7.59 -52.48 -0.40 1.15 16 22 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 23 N -0.89 -25.69 13.29 55.43 0.74 -24.95 16 24 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 25 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 26 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 27 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 28 C 0.06 0.74 5.57 -3.77 -0.02 0.72 16 29 C 0.06 0.72 5.27 -3.77 -0.02 0.70 16 30 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.30 7.70 -51.93 -0.40 -0.10 16 34 H 0.06 0.31 7.70 -51.93 -0.40 -0.09 16 35 H 0.14 0.77 6.44 -52.49 -0.34 0.43 16 36 H 0.13 0.64 8.06 -52.48 -0.42 0.22 16 37 H 0.16 1.06 8.06 -52.49 -0.42 0.63 16 38 H 0.06 0.85 8.05 -51.93 -0.42 0.43 16 39 H 0.09 1.11 7.83 -51.93 -0.41 0.70 16 40 H 0.09 1.17 6.72 -51.93 -0.35 0.83 16 41 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.81 8.00 -51.93 -0.42 0.40 16 43 H 0.08 1.18 7.84 -51.93 -0.41 0.77 16 44 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 46 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 47 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 48 H 0.08 0.97 8.00 -51.93 -0.42 0.55 16 49 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 50 H 0.10 1.12 5.47 -51.93 -0.28 0.84 16 LS Contribution 404.28 15.07 6.09 6.09 Total: -1.00 -32.51 404.28 -10.15 -42.66 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -7.94 Total: -2.99 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: -2.72 Total: -2.30 kcal Atomic # 7 Polarization: -56.50 SS G_CDS: -0.41 Total: -56.92 kcal Atomic # 8 Polarization: -2.90 SS G_CDS: -0.15 Total: -3.04 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.51 -10.15 -42.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364518551.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.818 kcal (2) G-P(sol) polarization free energy of solvation -32.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds