Wall clock time and date at job start Wed Apr 1 2020 02:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.49037 * 2 1 4 4 C 1.53041 * 109.49841 * 239.94138 * 2 1 3 5 5 C 1.53045 * 109.52507 * 301.41580 * 4 2 1 6 6 C 1.53193 * 109.31240 * 298.61724 * 5 4 2 7 7 N 1.46927 * 108.76345 * 54.65246 * 6 5 4 8 8 C 1.34780 * 120.62541 * 126.36906 * 7 6 5 9 9 O 1.21618 * 119.99705 * 186.19051 * 8 7 6 10 10 C 1.47374 * 120.00127 * 6.17724 * 8 7 6 11 11 C 1.38120 * 126.46946 * 34.10514 * 10 8 7 12 12 N 1.34428 * 108.38988 * 179.97438 * 11 10 8 13 13 H 0.97000 * 125.39000 * 179.97438 * 12 11 10 14 14 C 1.37706 * 109.21915 * 359.97438 * 12 11 10 15 15 C 1.43201 * 125.83960 * 179.97438 * 14 12 11 16 16 N 9.24442 * 67.98900 * 159.29080 * 2 1 3 17 17 C 1.36349 * 108.31669 * 359.76743 * 14 12 11 18 18 C 1.46924 * 118.74480 * 306.38471 * 7 6 5 19 19 H 1.09004 * 109.70005 * 293.75614 * 18 7 6 20 20 C 1.52987 * 109.59038 * 173.39834 * 18 7 6 21 21 C 1.53005 * 109.47495 * 181.18633 * 20 18 7 22 22 C 1.52997 * 109.47127 * 185.38733 * 21 20 18 23 23 N 1.46507 * 109.46939 * 179.97438 * 22 21 20 24 24 C 1.36929 * 120.00121 * 180.02562 * 23 22 21 25 25 H 1.08008 * 120.00131 * 359.97438 * 24 23 22 26 26 C 1.38812 * 120.00378 * 180.02562 * 24 23 22 27 27 N 1.31620 * 119.99737 * 359.97438 * 26 24 23 28 28 Si 1.86798 * 120.00237 * 179.97438 * 26 24 23 29 29 H 1.48507 * 109.47172 * 59.99757 * 28 26 24 30 30 H 1.48501 * 109.47137 * 179.97438 * 28 26 24 31 31 H 1.48494 * 109.47359 * 299.99442 * 28 26 24 32 32 H 1.08997 * 109.46527 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47097 * 300.06163 * 1 2 3 34 34 H 1.09001 * 109.47042 * 60.06586 * 1 2 3 35 35 H 1.09000 * 109.45980 * 61.42590 * 4 2 1 36 36 H 1.08995 * 109.45762 * 181.40345 * 4 2 1 37 37 H 1.09000 * 109.49504 * 58.58061 * 5 4 2 38 38 H 1.08994 * 109.49502 * 178.67927 * 5 4 2 39 39 H 1.09004 * 109.59429 * 294.86823 * 6 5 4 40 40 H 1.08990 * 109.70151 * 174.50702 * 6 5 4 41 41 H 1.08008 * 125.80612 * 359.92238 * 11 10 8 42 42 H 1.08000 * 126.49839 * 180.23020 * 17 14 12 43 43 H 1.09006 * 109.47266 * 301.18511 * 20 18 7 44 44 H 1.08998 * 109.47562 * 61.18329 * 20 18 7 45 45 H 1.08997 * 109.46881 * 305.38959 * 21 20 18 46 46 H 1.09000 * 109.46830 * 65.38412 * 21 20 18 47 47 H 1.08997 * 109.47424 * 299.99893 * 22 21 20 48 48 H 1.09000 * 109.47528 * 60.00106 * 22 21 20 49 49 H 0.97001 * 119.99630 * 0.02562 * 23 22 21 50 50 H 0.97003 * 120.00235 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0409 -0.7226 -1.2486 5 6 1.5029 -2.1553 -1.2666 6 6 2.0142 -2.9040 -0.0317 7 7 1.6517 -2.1384 1.1688 8 6 0.9743 -2.7226 2.1770 9 8 0.5818 -2.0535 3.1138 10 6 0.7088 -4.1718 2.1441 11 6 1.5351 -5.1461 1.6189 12 7 0.9393 -6.3401 1.7813 13 1 1.3052 -7.1933 1.5002 14 6 -0.2727 -6.1603 2.4099 15 6 -1.1995 -7.1956 2.7559 16 7 -1.9346 -8.0168 3.0308 17 6 -0.4370 -4.8283 2.6505 18 6 2.0413 -0.7241 1.2494 19 1 3.1273 -0.6444 1.2991 20 6 1.4230 -0.0920 2.4978 21 6 1.8061 1.3879 2.5633 22 6 1.3018 1.9876 3.8774 23 7 1.6691 3.4044 3.9404 24 6 1.3216 4.1540 5.0323 25 1 0.7762 3.7008 5.8470 26 6 1.6692 5.4966 5.0918 27 7 2.3333 6.0490 4.0987 28 14 1.1944 6.5192 6.5811 29 1 1.8103 5.9349 7.7996 30 1 1.6794 7.9112 6.4008 31 1 -0.2833 6.5246 6.7272 32 1 -0.3632 -1.0277 0.0005 33 1 -0.3633 0.5148 0.8894 34 1 -0.3633 0.5128 -0.8906 35 1 1.6987 -0.1951 -2.1390 36 1 3.1305 -0.7440 -1.2354 37 1 0.4131 -2.1348 -1.2545 38 1 1.8478 -2.6621 -2.1678 39 1 3.0981 -3.0041 -0.0878 40 1 1.5577 -3.8926 0.0136 41 1 2.4960 -4.9772 1.1556 42 1 -1.2831 -4.3624 3.1337 43 1 0.3378 -0.1847 2.4525 44 1 1.7945 -0.6031 3.3859 45 1 2.8905 1.4851 2.5120 46 1 1.3538 1.9177 1.7249 47 1 0.2174 1.8904 3.9286 48 1 1.7540 1.4578 4.7158 49 1 2.1586 3.8115 3.2085 50 1 2.5766 6.9871 4.1404 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001489063828.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:28 Heat of formation + Delta-G solvation = 64.396141 kcal Electronic energy + Delta-G solvation = -30187.052853 eV Core-core repulsion = 26216.028639 eV Total energy + Delta-G solvation = -3971.024213 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.12865 -40.56223 -37.72239 -36.92876 -35.61009 -34.04604 -33.20236 -31.89641 -31.39690 -30.29073 -29.47607 -27.17253 -26.22878 -24.61138 -23.61143 -23.00237 -22.76281 -21.40757 -20.58964 -20.48212 -19.58456 -18.21869 -17.02631 -16.83312 -16.11774 -15.99735 -15.82418 -15.45338 -14.97107 -14.81051 -14.52569 -14.33957 -13.98774 -13.89034 -13.69269 -13.51880 -13.45916 -13.26396 -13.18232 -13.10953 -13.01387 -12.74584 -12.48129 -12.13261 -11.78130 -11.67505 -11.43850 -11.15723 -10.97178 -10.80927 -10.71368 -10.69250 -10.53896 -10.29719 -9.99998 -9.88046 -9.63670 -9.54398 -9.01998 -8.82028 -8.72994 -8.55194 -6.76827 -5.64368 -2.91389 0.83641 1.51971 1.76456 2.61238 2.79018 2.91043 3.18747 3.51838 3.52804 3.56060 3.57971 4.32063 4.32939 4.49726 4.61508 4.66424 4.71205 4.76167 4.83908 5.01572 5.03895 5.16178 5.24213 5.43635 5.44906 5.48196 5.59076 5.63503 5.67193 5.69818 5.75805 5.79773 5.91204 5.95915 6.02985 6.06460 6.08617 6.09962 6.27492 6.38047 6.44563 6.54147 6.57002 6.61398 6.63147 6.92836 6.94570 7.14534 7.15797 7.37605 7.82355 8.21727 8.55706 9.66006 10.27166 10.62053 11.58935 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013316 B = 0.002314 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.276845 B =12096.836689 C =13696.137291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.106 4.106 3 H 0.088 0.912 4 C -0.116 4.116 5 C -0.137 4.137 6 C 0.097 3.903 7 N -0.603 5.603 8 C 0.583 3.417 9 O -0.515 6.515 10 C -0.215 4.215 11 C 0.073 3.927 12 N -0.521 5.521 13 H 0.426 0.574 14 C 0.045 3.955 15 C 0.279 3.721 16 N -0.404 5.404 17 C -0.051 4.051 18 C 0.156 3.844 19 H 0.071 0.929 20 C -0.103 4.103 21 C -0.132 4.132 22 C 0.156 3.844 23 N -0.735 5.735 24 C -0.233 4.233 25 H 0.069 0.931 26 C -0.019 4.019 27 N -0.937 5.937 28 Si 0.907 3.093 29 H -0.287 1.287 30 H -0.292 1.292 31 H -0.287 1.287 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.049 0.951 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.090 0.910 41 H 0.189 0.811 42 H 0.160 0.840 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.055 0.945 46 H 0.059 0.941 47 H 0.017 0.983 48 H 0.017 0.983 49 H 0.382 0.618 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.503 -28.265 -15.824 32.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.125 4.125 3 H 0.106 0.894 4 C -0.153 4.153 5 C -0.175 4.175 6 C -0.026 4.026 7 N -0.336 5.336 8 C 0.372 3.628 9 O -0.391 6.391 10 C -0.225 4.225 11 C -0.068 4.068 12 N -0.115 5.115 13 H 0.264 0.736 14 C -0.067 4.067 15 C -0.037 4.037 16 N -0.081 5.081 17 C -0.079 4.079 18 C 0.053 3.947 19 H 0.089 0.911 20 C -0.141 4.141 21 C -0.171 4.171 22 C 0.029 3.971 23 N -0.379 5.379 24 C -0.364 4.364 25 H 0.087 0.913 26 C -0.214 4.214 27 N -0.586 5.586 28 Si 0.738 3.262 29 H -0.214 1.214 30 H -0.218 1.218 31 H -0.213 1.213 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.068 0.932 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.108 0.892 41 H 0.206 0.794 42 H 0.178 0.822 43 H 0.100 0.900 44 H 0.099 0.901 45 H 0.074 0.926 46 H 0.078 0.922 47 H 0.035 0.965 48 H 0.035 0.965 49 H 0.215 0.785 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.116 -29.291 -14.758 32.800 hybrid contribution 0.538 0.656 0.154 0.862 sum 0.654 -28.636 -14.605 32.152 Atomic orbital electron populations 1.21880 0.94738 1.01674 1.02071 1.21571 0.96922 1.00063 0.93935 0.89421 1.21566 1.00390 0.95247 0.98132 1.21957 1.01950 0.96460 0.97161 1.22035 0.99989 0.95830 0.84703 1.47955 1.56646 1.11444 1.17593 1.17404 0.77782 0.85487 0.82176 1.90938 1.50272 1.63018 1.34837 1.19772 0.98288 0.93666 1.10771 1.22652 0.99432 0.83140 1.01604 1.41582 1.14909 1.09675 1.45355 0.73570 1.15148 0.88513 0.90447 1.12555 1.24290 0.93411 0.92349 0.93657 1.81346 1.09023 1.08148 1.09550 1.21109 0.98796 0.89517 0.98523 1.21414 0.98446 0.78461 0.96344 0.91087 1.22095 1.02216 0.93954 0.95845 1.21909 1.00671 0.95337 0.99140 1.20585 0.96644 0.85895 0.93989 1.42402 1.68146 1.04981 1.22357 1.19236 1.28875 0.91520 0.96795 0.91303 1.24729 1.01509 0.96985 0.98190 1.69655 1.44868 1.12230 1.31885 0.86262 0.78008 0.79445 0.82481 1.21355 1.21786 1.21347 0.92762 0.91581 0.93171 0.91722 0.91881 0.90949 0.91135 0.91473 0.89157 0.79379 0.82225 0.90038 0.90085 0.92618 0.92239 0.96503 0.96528 0.78468 0.93654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 8.19 37.16 0.30 -1.28 16 2 C -0.11 -1.06 2.27 -90.50 -0.21 -1.26 16 3 H 0.09 0.98 6.88 -51.93 -0.36 0.63 16 4 C -0.12 -0.85 5.43 -26.69 -0.14 -0.99 16 5 C -0.14 -0.78 5.74 -26.61 -0.15 -0.93 16 6 C 0.10 0.50 5.28 -3.71 -0.02 0.48 16 7 N -0.60 -5.39 2.41 -166.51 -0.40 -5.79 16 8 C 0.58 6.31 7.52 -12.54 -0.09 6.22 16 9 O -0.51 -7.75 12.46 5.26 0.07 -7.68 16 10 C -0.22 -1.65 5.42 -105.01 -0.57 -2.22 16 11 C 0.07 0.27 9.50 -16.46 -0.16 0.11 16 12 N -0.52 -1.55 6.02 -10.29 -0.06 -1.61 16 13 H 0.43 -0.08 8.96 -40.82 -0.37 -0.44 16 14 C 0.04 0.27 6.90 -83.98 -0.58 -0.31 16 15 C 0.28 2.18 15.88 -22.47 -0.36 1.83 16 16 N -0.40 -4.15 18.54 41.84 0.78 -3.38 16 17 C -0.05 -0.39 10.73 -39.05 -0.42 -0.81 16 18 C 0.16 1.71 2.73 -67.61 -0.18 1.52 16 19 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 20 C -0.10 -1.51 2.63 -26.74 -0.07 -1.58 16 21 C -0.13 -2.27 4.79 -26.73 -0.13 -2.40 16 22 C 0.16 3.46 6.26 -4.04 -0.03 3.44 16 23 N -0.74 -19.90 5.60 -59.91 -0.34 -20.23 16 24 C -0.23 -6.90 9.99 -15.06 -0.15 -7.06 16 25 H 0.07 1.99 7.83 -52.48 -0.41 1.58 16 26 C -0.02 -0.57 5.50 -17.43 -0.10 -0.66 16 27 N -0.94 -29.31 13.06 55.49 0.72 -28.58 16 28 Si 0.91 23.31 29.55 -169.99 -5.02 18.29 16 29 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 30 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 31 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 32 H 0.05 0.57 5.97 -51.93 -0.31 0.26 16 33 H 0.07 0.86 6.25 -51.93 -0.32 0.54 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.49 6.33 -51.93 -0.33 0.16 16 38 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.09 0.30 4.48 -51.93 -0.23 0.07 16 41 H 0.19 0.12 6.80 -52.48 -0.36 -0.24 16 42 H 0.16 1.25 8.06 -52.49 -0.42 0.83 16 43 H 0.08 1.31 5.17 -51.93 -0.27 1.04 16 44 H 0.08 1.34 6.56 -51.93 -0.34 1.00 16 45 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.06 1.01 6.75 -51.93 -0.35 0.66 16 47 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.38 10.69 7.67 -40.82 -0.31 10.38 16 50 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 393.04 15.07 5.92 5.92 Total: -1.00 -36.67 393.04 -8.70 -45.38 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -7.32 Total: 3.59 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: -3.05 Total: -5.90 kcal Atomic # 7 Polarization: -60.29 SS G_CDS: 0.70 Total: -59.59 kcal Atomic # 8 Polarization: -7.75 SS G_CDS: 0.07 Total: -7.68 kcal Atomic # 14 Polarization: 23.31 SS G_CDS: -5.02 Total: 18.29 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.67 -8.70 -45.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489063828.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.771 kcal (2) G-P(sol) polarization free energy of solvation -36.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds