Wall clock time and date at job start Wed Apr 1 2020 02:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.49037 * 2 1 4 4 C 1.53041 * 109.49841 * 239.94138 * 2 1 3 5 5 C 1.53045 * 109.52507 * 301.41580 * 4 2 1 6 6 C 1.53193 * 109.31240 * 298.61724 * 5 4 2 7 7 N 1.46927 * 108.76345 * 54.65246 * 6 5 4 8 8 C 1.34780 * 120.62541 * 126.36906 * 7 6 5 9 9 O 1.21618 * 119.99705 * 186.19051 * 8 7 6 10 10 C 1.47374 * 120.00127 * 6.17724 * 8 7 6 11 11 C 1.38120 * 126.46946 * 34.10514 * 10 8 7 12 12 N 1.34428 * 108.38988 * 179.97438 * 11 10 8 13 13 H 0.97000 * 125.39000 * 179.97438 * 12 11 10 14 14 C 1.37706 * 109.21915 * 359.97438 * 12 11 10 15 15 C 1.43201 * 125.83960 * 179.97438 * 14 12 11 16 16 N 9.24442 * 67.98900 * 159.29080 * 2 1 3 17 17 C 1.36349 * 108.31669 * 359.76743 * 14 12 11 18 18 C 1.46924 * 118.74480 * 306.38471 * 7 6 5 19 19 H 1.09004 * 109.70005 * 293.75614 * 18 7 6 20 20 C 1.52987 * 109.59038 * 173.39834 * 18 7 6 21 21 C 1.53005 * 109.47495 * 181.18633 * 20 18 7 22 22 C 1.52997 * 109.47127 * 185.38733 * 21 20 18 23 23 N 1.46507 * 109.46939 * 179.97438 * 22 21 20 24 24 C 1.36929 * 120.00121 * 180.02562 * 23 22 21 25 25 H 1.08008 * 120.00131 * 359.97438 * 24 23 22 26 26 C 1.38812 * 120.00378 * 180.02562 * 24 23 22 27 27 N 1.31620 * 119.99737 * 359.97438 * 26 24 23 28 28 Si 1.86798 * 120.00237 * 179.97438 * 26 24 23 29 29 H 1.48507 * 109.47172 * 59.99757 * 28 26 24 30 30 H 1.48501 * 109.47137 * 179.97438 * 28 26 24 31 31 H 1.48494 * 109.47359 * 299.99442 * 28 26 24 32 32 H 1.08997 * 109.46527 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47097 * 300.06163 * 1 2 3 34 34 H 1.09001 * 109.47042 * 60.06586 * 1 2 3 35 35 H 1.09000 * 109.45980 * 61.42590 * 4 2 1 36 36 H 1.08995 * 109.45762 * 181.40345 * 4 2 1 37 37 H 1.09000 * 109.49504 * 58.58061 * 5 4 2 38 38 H 1.08994 * 109.49502 * 178.67927 * 5 4 2 39 39 H 1.09004 * 109.59429 * 294.86823 * 6 5 4 40 40 H 1.08990 * 109.70151 * 174.50702 * 6 5 4 41 41 H 1.08008 * 125.80612 * 359.92238 * 11 10 8 42 42 H 1.08000 * 126.49839 * 180.23020 * 17 14 12 43 43 H 1.09006 * 109.47266 * 301.18511 * 20 18 7 44 44 H 1.08998 * 109.47562 * 61.18329 * 20 18 7 45 45 H 1.08997 * 109.46881 * 305.38959 * 21 20 18 46 46 H 1.09000 * 109.46830 * 65.38412 * 21 20 18 47 47 H 1.08997 * 109.47424 * 299.99893 * 22 21 20 48 48 H 1.09000 * 109.47528 * 60.00106 * 22 21 20 49 49 H 0.97001 * 119.99630 * 0.02562 * 23 22 21 50 50 H 0.97003 * 120.00235 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0409 -0.7226 -1.2486 5 6 1.5029 -2.1553 -1.2666 6 6 2.0142 -2.9040 -0.0317 7 7 1.6517 -2.1384 1.1688 8 6 0.9743 -2.7226 2.1770 9 8 0.5818 -2.0535 3.1138 10 6 0.7088 -4.1718 2.1441 11 6 1.5351 -5.1461 1.6189 12 7 0.9393 -6.3401 1.7813 13 1 1.3052 -7.1933 1.5002 14 6 -0.2727 -6.1603 2.4099 15 6 -1.1995 -7.1956 2.7559 16 7 -1.9346 -8.0168 3.0308 17 6 -0.4370 -4.8283 2.6505 18 6 2.0413 -0.7241 1.2494 19 1 3.1273 -0.6444 1.2991 20 6 1.4230 -0.0920 2.4978 21 6 1.8061 1.3879 2.5633 22 6 1.3018 1.9876 3.8774 23 7 1.6691 3.4044 3.9404 24 6 1.3216 4.1540 5.0323 25 1 0.7762 3.7008 5.8470 26 6 1.6692 5.4966 5.0918 27 7 2.3333 6.0490 4.0987 28 14 1.1944 6.5192 6.5811 29 1 1.8103 5.9349 7.7996 30 1 1.6794 7.9112 6.4008 31 1 -0.2833 6.5246 6.7272 32 1 -0.3632 -1.0277 0.0005 33 1 -0.3633 0.5148 0.8894 34 1 -0.3633 0.5128 -0.8906 35 1 1.6987 -0.1951 -2.1390 36 1 3.1305 -0.7440 -1.2354 37 1 0.4131 -2.1348 -1.2545 38 1 1.8478 -2.6621 -2.1678 39 1 3.0981 -3.0041 -0.0878 40 1 1.5577 -3.8926 0.0136 41 1 2.4960 -4.9772 1.1556 42 1 -1.2831 -4.3624 3.1337 43 1 0.3378 -0.1847 2.4525 44 1 1.7945 -0.6031 3.3859 45 1 2.8905 1.4851 2.5120 46 1 1.3538 1.9177 1.7249 47 1 0.2174 1.8904 3.9286 48 1 1.7540 1.4578 4.7158 49 1 2.1586 3.8115 3.2085 50 1 2.5766 6.9871 4.1404 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001489063828.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:27 Heat of formation + Delta-G solvation = 40.322051 kcal Electronic energy + Delta-G solvation = -30188.096784 eV Core-core repulsion = 26216.028639 eV Total energy + Delta-G solvation = -3972.068144 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.63220 -41.30651 -38.54240 -37.61868 -37.23271 -35.35665 -34.26071 -33.09869 -32.33962 -30.94333 -30.82930 -28.27084 -27.19735 -25.93751 -24.63662 -24.00130 -23.48269 -22.64563 -21.74350 -21.03875 -20.30329 -19.12121 -18.91792 -17.52538 -16.92227 -16.74395 -16.68084 -16.42893 -16.28600 -15.63855 -15.44977 -15.29191 -15.18508 -15.11394 -14.88145 -14.62188 -14.44822 -14.10939 -14.04726 -13.92249 -13.69429 -13.57681 -13.33078 -13.27744 -13.06246 -12.85629 -12.72112 -12.62455 -12.38301 -12.20763 -12.01549 -11.89354 -11.80908 -11.62486 -11.47863 -11.18612 -11.05969 -10.90597 -10.18511 -9.97000 -9.39259 -9.24488 -9.00780 -7.95303 -5.24604 0.35778 0.93472 1.23747 1.45837 1.50190 1.56388 2.05246 2.13959 2.29462 2.52052 2.56388 3.05842 3.36878 3.63393 3.89897 3.91054 4.02134 4.06473 4.12772 4.22276 4.26406 4.28942 4.33299 4.40068 4.58185 4.62083 4.69458 4.77277 4.78733 4.80854 4.88934 4.95015 4.98980 4.99326 5.07238 5.14761 5.19042 5.24624 5.33641 5.35020 5.41308 5.43265 5.47216 5.56363 5.58669 5.62219 5.68059 5.90323 6.26588 6.27281 6.43366 6.67499 7.32781 7.45285 8.08362 8.34837 9.28029 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013316 B = 0.002314 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.276845 B =12096.836689 C =13696.137291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.105 4.105 3 H 0.072 0.928 4 C -0.112 4.112 5 C -0.134 4.134 6 C 0.091 3.909 7 N -0.598 5.598 8 C 0.578 3.422 9 O -0.573 6.573 10 C -0.249 4.249 11 C 0.118 3.882 12 N -0.497 5.497 13 H 0.446 0.554 14 C 0.043 3.957 15 C 0.303 3.697 16 N -0.451 5.451 17 C -0.066 4.066 18 C 0.160 3.840 19 H 0.082 0.918 20 C -0.085 4.085 21 C -0.116 4.116 22 C 0.156 3.844 23 N -0.746 5.746 24 C -0.252 4.252 25 H 0.069 0.931 26 C -0.076 4.076 27 N -0.968 5.968 28 Si 0.977 3.023 29 H -0.278 1.278 30 H -0.290 1.290 31 H -0.279 1.279 32 H 0.057 0.943 33 H 0.033 0.967 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.058 0.942 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.114 0.886 41 H 0.234 0.766 42 H 0.143 0.857 43 H 0.062 0.938 44 H 0.060 0.940 45 H 0.059 0.941 46 H 0.059 0.941 47 H 0.006 0.994 48 H 0.009 0.991 49 H 0.375 0.625 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.406 -30.426 -17.765 35.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.124 4.124 3 H 0.090 0.910 4 C -0.149 4.149 5 C -0.172 4.172 6 C -0.030 4.030 7 N -0.330 5.330 8 C 0.368 3.632 9 O -0.454 6.454 10 C -0.258 4.258 11 C -0.025 4.025 12 N -0.093 5.093 13 H 0.289 0.711 14 C -0.069 4.069 15 C -0.012 4.012 16 N -0.129 5.129 17 C -0.094 4.094 18 C 0.057 3.943 19 H 0.100 0.900 20 C -0.124 4.124 21 C -0.154 4.154 22 C 0.030 3.970 23 N -0.388 5.388 24 C -0.384 4.384 25 H 0.087 0.913 26 C -0.268 4.268 27 N -0.618 5.618 28 Si 0.805 3.195 29 H -0.204 1.204 30 H -0.215 1.215 31 H -0.205 1.205 32 H 0.076 0.924 33 H 0.053 0.947 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.077 0.923 38 H 0.118 0.882 39 H 0.116 0.884 40 H 0.131 0.869 41 H 0.250 0.750 42 H 0.161 0.839 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.078 0.922 47 H 0.024 0.976 48 H 0.027 0.973 49 H 0.207 0.793 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.020 -31.538 -16.739 35.762 hybrid contribution -0.055 1.324 0.727 1.512 sum 1.965 -30.214 -16.012 34.251 Atomic orbital electron populations 1.21817 0.95737 1.01512 1.00787 1.21541 0.95989 0.99673 0.95203 0.90989 1.21549 1.01130 0.96101 0.96163 1.21962 1.01140 0.95489 0.98641 1.22421 1.02048 0.96092 0.82425 1.47998 1.55879 1.10593 1.18513 1.17879 0.76973 0.86679 0.81623 1.90909 1.52753 1.64611 1.37098 1.19498 0.99754 0.92572 1.13979 1.23140 0.99334 0.81804 0.98247 1.41553 1.13397 1.10644 1.43679 0.71106 1.14824 0.89505 0.89087 1.13533 1.24414 0.92721 0.91665 0.92408 1.81366 1.10393 1.09820 1.11296 1.21080 0.98973 0.90440 0.98949 1.21204 0.98579 0.79947 0.94577 0.89986 1.21831 1.01187 0.91925 0.97414 1.21762 1.00522 0.96956 0.96184 1.20705 0.95962 0.83864 0.96509 1.42589 1.68061 1.06591 1.21593 1.19608 1.28913 0.92323 0.97543 0.91275 1.25618 1.01738 0.98100 1.01373 1.69812 1.45863 1.12384 1.33769 0.85160 0.77925 0.77448 0.78918 1.20366 1.21535 1.20473 0.92362 0.94746 0.92488 0.91504 0.90575 0.92300 0.88154 0.88446 0.86854 0.75027 0.83893 0.91943 0.92099 0.92214 0.92209 0.97571 0.97281 0.79315 0.93834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 8.19 71.98 0.59 -2.54 16 2 C -0.10 -2.02 2.27 -10.72 -0.02 -2.05 16 3 H 0.07 1.61 6.88 -2.39 -0.02 1.60 16 4 C -0.11 -1.32 5.43 30.62 0.17 -1.15 16 5 C -0.13 -0.98 5.74 30.67 0.18 -0.81 16 6 C 0.09 0.53 5.28 86.36 0.46 0.98 16 7 N -0.60 -9.60 2.41 -798.95 -1.92 -11.52 16 8 C 0.58 12.31 7.52 86.65 0.65 12.96 16 9 O -0.57 -18.40 12.46 -4.09 -0.05 -18.45 16 10 C -0.25 -3.38 5.42 -20.11 -0.11 -3.49 16 11 C 0.12 0.34 9.50 84.27 0.80 1.14 16 12 N -0.50 -0.98 6.02 -186.47 -1.12 -2.10 16 13 H 0.45 -2.31 8.96 -92.71 -0.83 -3.14 16 14 C 0.04 0.44 6.90 39.03 0.27 0.71 16 15 C 0.30 4.54 15.88 88.33 1.40 5.94 16 16 N -0.45 -9.27 18.54 19.00 0.35 -8.92 16 17 C -0.07 -0.99 10.73 22.62 0.24 -0.75 16 18 C 0.16 3.40 2.73 44.97 0.12 3.53 16 19 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 20 C -0.09 -2.64 2.63 30.59 0.08 -2.56 16 21 C -0.12 -4.17 4.79 30.59 0.15 -4.02 16 22 C 0.16 7.27 6.26 86.38 0.54 7.81 16 23 N -0.75 -41.80 5.60 -343.44 -1.92 -43.72 16 24 C -0.25 -15.30 9.99 84.03 0.84 -14.46 16 25 H 0.07 4.09 7.83 -2.91 -0.02 4.07 16 26 C -0.08 -4.61 5.50 84.86 0.47 -4.15 16 27 N -0.97 -61.41 13.06 21.65 0.28 -61.13 16 28 Si 0.98 48.34 29.55 68.60 2.03 50.37 16 29 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 30 H -0.29 -14.11 7.11 99.48 0.71 -13.41 16 31 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 32 H 0.06 1.22 5.97 -2.39 -0.01 1.21 16 33 H 0.03 0.96 6.25 -2.39 -0.01 0.95 16 34 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.06 0.62 6.33 -2.39 -0.02 0.61 16 38 H 0.10 0.23 8.14 -2.39 -0.02 0.22 16 39 H 0.10 0.10 8.14 -2.38 -0.02 0.08 16 40 H 0.11 0.13 4.48 -2.39 -0.01 0.12 16 41 H 0.23 -1.34 6.80 -2.91 -0.02 -1.36 16 42 H 0.14 2.53 8.06 -2.91 -0.02 2.51 16 43 H 0.06 2.18 5.17 -2.38 -0.01 2.17 16 44 H 0.06 2.14 6.56 -2.39 -0.02 2.12 16 45 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 46 H 0.06 2.14 6.75 -2.39 -0.02 2.12 16 47 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 48 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 49 H 0.37 21.72 7.67 -92.71 -0.71 21.01 16 50 H 0.25 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -84.96 393.04 3.91 -81.04 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -0.55 Total: 17.32 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: 6.82 Total: -2.90 kcal Atomic # 7 Polarization: -123.05 SS G_CDS: -4.34 Total: -127.39 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: -0.05 Total: -18.45 kcal Atomic # 14 Polarization: 48.34 SS G_CDS: 2.03 Total: 50.37 kcal Total: -84.96 3.91 -81.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489063828.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.366 kcal (2) G-P(sol) polarization free energy of solvation -84.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds