Wall clock time and date at job start Wed Apr 1 2020 03:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.46809 * 2 1 4 4 C 1.53002 * 109.46939 * 119.99637 * 2 1 3 5 5 C 1.53002 * 109.46905 * 185.00138 * 4 2 1 6 6 C 1.53004 * 109.46972 * 179.97438 * 5 4 2 7 7 N 1.46500 * 109.47067 * 179.97438 * 6 5 4 8 8 C 1.36933 * 120.00256 * 180.02562 * 7 6 5 9 9 H 1.08001 * 119.99572 * 0.02562 * 8 7 6 10 10 C 1.38807 * 120.00429 * 180.02562 * 8 7 6 11 11 N 1.31618 * 119.99857 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 120.00195 * 180.02562 * 10 8 7 13 13 H 1.48507 * 109.47255 * 59.99678 * 12 10 8 14 14 H 1.48507 * 109.47357 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47137 * 299.99603 * 12 10 8 16 16 N 1.46496 * 109.47271 * 239.99364 * 2 1 3 17 17 C 1.34776 * 119.99846 * 85.00297 * 16 2 1 18 18 O 1.21282 * 119.99940 * 359.97438 * 17 16 2 19 19 C 1.50698 * 120.00035 * 180.02562 * 17 16 2 20 20 C 1.53006 * 109.47184 * 179.97438 * 19 17 16 21 21 N 1.46504 * 109.46883 * 179.97438 * 20 19 17 22 22 C 1.36031 * 126.34451 * 264.68224 * 21 20 19 23 23 N 1.30111 * 110.10021 * 179.88191 * 22 21 20 24 24 C 1.35787 * 109.64017 * 0.39043 * 23 22 21 25 25 C 1.39736 * 133.60274 * 179.76182 * 24 23 22 26 26 C 1.36605 * 119.88850 * 180.02562 * 25 24 23 27 27 C 1.38770 * 120.66778 * 359.97438 * 26 25 24 28 28 C 1.37857 * 120.45524 * 0.03828 * 27 26 25 29 29 C 1.38050 * 126.35121 * 85.00292 * 21 20 19 30 30 H 1.09007 * 109.47219 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47297 * 300.00575 * 1 2 3 32 32 H 1.08999 * 109.46994 * 60.00417 * 1 2 3 33 33 H 1.09001 * 109.46790 * 305.00010 * 4 2 1 34 34 H 1.08998 * 109.47319 * 65.00234 * 4 2 1 35 35 H 1.08996 * 109.46849 * 299.99632 * 5 4 2 36 36 H 1.08998 * 109.47054 * 59.99933 * 5 4 2 37 37 H 1.09001 * 109.47067 * 300.00082 * 6 5 4 38 38 H 1.08998 * 109.46975 * 60.00265 * 6 5 4 39 39 H 0.97001 * 119.99866 * 0.02562 * 7 6 5 40 40 H 0.97001 * 120.00196 * 180.02562 * 11 10 8 41 41 H 0.96998 * 120.00192 * 265.00345 * 16 2 1 42 42 H 1.09001 * 109.47612 * 59.99945 * 19 17 16 43 43 H 1.09001 * 109.47122 * 299.99777 * 19 17 16 44 44 H 1.09001 * 109.47002 * 299.99404 * 20 19 17 45 45 H 1.08993 * 109.46955 * 59.99842 * 20 19 17 46 46 H 1.08001 * 124.95709 * 0.02562 * 22 21 20 47 47 H 1.08006 * 120.06037 * 359.97438 * 25 24 23 48 48 H 1.07999 * 119.66412 * 179.97438 * 26 25 24 49 49 H 1.08003 * 119.77467 * 180.02562 * 27 26 25 50 50 H 1.07995 * 120.16274 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3138 6 6 4.0747 -1.3338 2.5634 7 7 5.5348 -1.2310 2.6248 8 6 6.2187 -1.8052 3.6630 9 1 5.6816 -2.3343 4.4363 10 6 7.6020 -1.7073 3.7215 11 7 8.2566 -1.0629 2.7788 12 14 8.5349 -2.4912 5.1373 13 1 8.2778 -3.9538 5.1499 14 1 9.9897 -2.2462 4.9676 15 1 8.0787 -1.8974 6.4197 16 7 2.0184 -0.6907 -1.1960 17 6 2.1471 -0.0184 -2.3570 18 8 1.8583 1.1582 -2.4117 19 6 2.6490 -0.7291 -3.5876 20 6 2.7000 0.2539 -4.7590 21 7 3.1884 -0.4369 -5.9551 22 6 4.4735 -0.4670 -6.4004 23 7 4.5528 -1.1743 -7.4896 24 6 3.3212 -1.6395 -7.8224 25 6 2.8395 -2.4265 -8.8718 26 6 1.5102 -2.7345 -8.9370 27 6 0.6286 -2.2738 -7.9695 28 6 1.0812 -1.4957 -6.9254 29 6 2.4290 -1.1727 -6.8426 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.6053 -0.2616 2.1370 34 1 1.7517 -1.7714 1.2057 35 1 3.9994 -1.0728 0.4261 36 1 3.8531 0.4371 1.3573 37 1 3.6401 -0.8739 3.4509 38 1 3.7864 -2.3841 2.5202 39 1 6.0172 -0.7561 1.9301 40 1 9.2233 -0.9948 2.8194 41 1 2.2490 -1.6319 -1.1524 42 1 1.9761 -1.5509 -3.8324 43 1 3.6481 -1.1216 -3.3984 44 1 1.7007 0.6460 -4.9481 45 1 3.3726 1.0759 -4.5145 46 1 5.3069 0.0226 -5.9188 47 1 3.5168 -2.7901 -9.6304 48 1 1.1418 -3.3427 -9.7499 49 1 -0.4194 -2.5263 -8.0350 50 1 0.3910 -1.1400 -6.1748 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506930871.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:43 Heat of formation + Delta-G solvation = 10.204279 kcal Electronic energy + Delta-G solvation = -28577.106215 eV Core-core repulsion = 24603.732067 eV Total energy + Delta-G solvation = -3973.374149 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.11265 -40.97109 -38.32764 -38.00705 -36.56420 -35.80804 -34.20574 -32.93476 -32.05268 -30.98092 -30.30837 -30.22856 -27.24812 -25.87650 -24.72708 -24.17959 -23.02886 -22.49475 -22.02959 -21.51680 -21.26359 -19.13924 -18.65939 -18.18512 -17.45549 -17.39838 -16.76720 -16.64710 -16.59324 -16.33597 -15.80125 -15.44455 -15.30992 -15.09184 -15.01139 -14.75856 -14.57408 -14.35994 -14.28597 -13.75112 -13.69074 -13.42585 -13.17532 -13.01635 -12.89784 -12.74878 -12.59694 -12.44714 -12.39628 -12.31999 -12.27988 -12.08939 -11.86535 -11.72331 -11.50168 -11.45788 -10.95974 -10.93387 -10.90748 -10.08463 -9.33066 -9.08322 -9.01573 -7.96891 -5.26068 0.02068 0.57059 1.46309 1.49486 1.52003 1.55755 1.58135 1.82808 2.30090 2.54925 2.93247 3.35983 3.36645 3.56850 3.62539 3.65630 3.66887 3.89362 3.99848 4.10984 4.12835 4.22140 4.27803 4.33470 4.35170 4.41935 4.51186 4.52443 4.58484 4.68459 4.72366 4.76324 4.82043 4.87053 4.87673 4.93137 5.00655 5.12611 5.23514 5.31494 5.37318 5.42552 5.47257 5.49505 5.57947 5.59461 5.60519 5.97575 6.16133 6.25705 6.51696 6.88601 7.20471 7.31362 8.08845 8.30576 9.26508 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010971 B = 0.001914 C = 0.001710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2551.624679 B =14624.143781 C =16370.632548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.144 3.856 3 H 0.066 0.934 4 C -0.111 4.111 5 C -0.112 4.112 6 C 0.148 3.852 7 N -0.750 5.750 8 C -0.249 4.249 9 H 0.076 0.924 10 C -0.079 4.079 11 N -0.970 5.970 12 Si 0.975 3.025 13 H -0.276 1.276 14 H -0.295 1.295 15 H -0.277 1.277 16 N -0.713 5.713 17 C 0.521 3.479 18 O -0.580 6.580 19 C -0.149 4.149 20 C 0.132 3.868 21 N -0.488 5.488 22 C 0.262 3.738 23 N -0.538 5.538 24 C 0.009 3.991 25 C -0.087 4.087 26 C -0.125 4.125 27 C -0.101 4.101 28 C -0.117 4.117 29 C 0.031 3.969 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.046 0.954 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.059 0.941 36 H 0.046 0.954 37 H 0.018 0.982 38 H 0.024 0.976 39 H 0.372 0.628 40 H 0.251 0.749 41 H 0.413 0.587 42 H 0.114 0.886 43 H 0.111 0.889 44 H 0.097 0.903 45 H 0.110 0.890 46 H 0.243 0.757 47 H 0.129 0.871 48 H 0.155 0.845 49 H 0.159 0.841 50 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.274 -1.577 -20.368 29.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.039 3.961 3 H 0.084 0.916 4 C -0.149 4.149 5 C -0.150 4.150 6 C 0.022 3.978 7 N -0.393 5.393 8 C -0.380 4.380 9 H 0.094 0.906 10 C -0.271 4.271 11 N -0.621 5.621 12 Si 0.804 3.196 13 H -0.202 1.202 14 H -0.222 1.222 15 H -0.203 1.203 16 N -0.365 5.365 17 C 0.308 3.692 18 O -0.460 6.460 19 C -0.190 4.190 20 C 0.010 3.990 21 N -0.178 5.178 22 C -0.023 4.023 23 N -0.257 5.257 24 C -0.108 4.108 25 C -0.107 4.107 26 C -0.145 4.145 27 C -0.121 4.121 28 C -0.138 4.138 29 C -0.078 4.078 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.065 0.935 33 H 0.107 0.893 34 H 0.105 0.895 35 H 0.078 0.922 36 H 0.065 0.935 37 H 0.036 0.964 38 H 0.042 0.958 39 H 0.203 0.797 40 H 0.060 0.940 41 H 0.249 0.751 42 H 0.132 0.868 43 H 0.130 0.870 44 H 0.115 0.885 45 H 0.128 0.872 46 H 0.259 0.741 47 H 0.147 0.853 48 H 0.173 0.827 49 H 0.176 0.824 50 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -20.799 -0.945 -20.576 29.272 hybrid contribution 0.808 -0.189 1.081 1.363 sum -19.990 -1.134 -19.494 27.945 Atomic orbital electron populations 1.22093 0.93845 1.02952 1.02371 1.20952 0.94708 0.96564 0.83826 0.91553 1.21758 0.93578 1.02200 0.97339 1.21583 0.96437 0.99695 0.97238 1.20873 0.83152 0.97394 0.96349 1.42633 1.02537 1.65937 1.28145 1.19633 0.90024 1.26513 1.01876 0.90571 1.25621 0.97557 1.02444 1.01449 1.69810 1.07111 1.48765 1.36417 0.85185 0.77054 0.78405 0.78961 1.20195 1.22171 1.20344 1.46087 1.66360 1.14753 1.09254 1.20596 0.76792 0.86725 0.85104 1.90718 1.52075 1.17460 1.85744 1.21950 1.05334 0.99966 0.91757 1.21529 1.03004 0.93908 0.80521 1.45573 1.07888 1.42467 1.21866 1.26038 0.87331 0.96988 0.91969 1.70446 1.23712 1.16332 1.15239 1.19529 0.89580 1.03325 0.98407 1.20294 0.96678 0.97366 0.96349 1.21008 0.91977 1.01069 1.00436 1.21313 1.01217 0.96469 0.93080 1.20298 0.90850 1.01529 1.01144 1.19214 0.95100 0.99919 0.93553 0.91008 0.90583 0.93475 0.89344 0.89498 0.92184 0.93511 0.96373 0.95757 0.79654 0.93982 0.75080 0.86828 0.87034 0.88488 0.87214 0.74145 0.85261 0.82744 0.82362 0.84468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 9.48 71.98 0.68 -1.68 16 2 C 0.14 2.68 2.57 44.99 0.12 2.79 16 3 H 0.07 1.58 7.58 -2.39 -0.02 1.56 16 4 C -0.11 -2.13 4.75 30.60 0.15 -1.99 16 5 C -0.11 -3.19 5.22 30.60 0.16 -3.04 16 6 C 0.15 5.62 6.26 86.38 0.54 6.16 16 7 N -0.75 -38.07 5.60 -343.45 -1.92 -39.99 16 8 C -0.25 -13.92 9.99 84.03 0.84 -13.08 16 9 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 10 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 11 N -0.97 -59.62 13.06 21.65 0.28 -59.34 16 12 Si 0.98 45.97 29.55 68.60 2.03 48.00 16 13 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 14 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 15 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 16 N -0.71 -11.77 4.53 -442.54 -2.00 -13.77 16 17 C 0.52 9.64 7.79 87.66 0.68 10.32 16 18 O -0.58 -15.02 15.65 -3.04 -0.05 -15.06 16 19 C -0.15 -1.92 6.02 29.85 0.18 -1.74 16 20 C 0.13 1.86 5.45 86.38 0.47 2.33 16 21 N -0.49 -8.49 2.80 -520.25 -1.46 -9.95 16 22 C 0.26 4.93 12.49 180.06 2.25 7.18 16 23 N -0.54 -13.54 11.27 -192.04 -2.17 -15.71 16 24 C 0.01 0.22 7.23 39.45 0.29 0.50 16 25 C -0.09 -1.69 10.05 22.25 0.22 -1.46 16 26 C -0.12 -1.70 9.96 22.01 0.22 -1.48 16 27 C -0.10 -1.25 10.03 22.31 0.22 -1.02 16 28 C -0.12 -1.79 10.05 22.32 0.22 -1.56 16 29 C 0.03 0.62 6.87 38.86 0.27 0.88 16 30 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 31 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.06 1.72 7.75 -2.39 -0.02 1.70 16 36 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.37 20.16 7.67 -92.71 -0.71 19.45 16 40 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 41 H 0.41 5.17 8.60 -92.71 -0.80 4.37 16 42 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.10 1.39 8.10 -2.39 -0.02 1.37 16 45 H 0.11 1.49 8.09 -2.39 -0.02 1.47 16 46 H 0.24 2.66 8.06 -2.91 -0.02 2.63 16 47 H 0.13 2.25 8.06 -2.91 -0.02 2.23 16 48 H 0.15 1.16 8.06 -2.91 -0.02 1.14 16 49 H 0.16 0.94 8.06 -2.91 -0.02 0.92 16 50 H 0.14 1.54 8.06 -2.91 -0.02 1.52 16 Total: -1.00 -78.02 419.16 2.12 -75.90 By element: Atomic # 1 Polarization: 31.44 SS G_CDS: -0.57 Total: 30.87 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: 7.98 Total: -0.95 kcal Atomic # 7 Polarization: -131.48 SS G_CDS: -7.27 Total: -138.75 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: -0.05 Total: -15.06 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -78.02 2.12 -75.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506930871.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.101 kcal (2) G-P(sol) polarization free energy of solvation -78.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds