Wall clock time and date at job start Wed Apr 1 2020 03:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42898 * 109.47170 * 2 1 4 4 C 1.42905 * 113.99499 * 180.02562 * 3 2 1 5 5 C 1.50698 * 109.46700 * 180.02562 * 4 3 2 6 6 N 1.30296 * 126.34812 * 90.02693 * 5 4 3 7 7 N 1.28533 * 110.05363 * 179.97438 * 6 5 4 8 8 C 1.31221 * 109.85741 * 0.02562 * 7 6 5 9 9 N 1.38583 * 126.46905 * 179.97438 * 8 7 6 10 10 C 1.46900 * 111.00315 * 295.02201 * 9 8 7 11 11 C 1.46903 * 111.00209 * 58.97893 * 9 8 7 12 12 H 1.09001 * 109.47084 * 300.00025 * 11 9 8 13 13 C 1.52999 * 109.46809 * 59.99354 * 11 9 8 14 14 C 1.50694 * 109.47556 * 179.97438 * 11 9 8 15 15 H 1.08007 * 120.00039 * 0.02562 * 14 11 9 16 16 C 1.37870 * 120.00394 * 180.02562 * 14 11 9 17 17 N 1.31519 * 119.99924 * 359.97438 * 16 14 11 18 18 Si 1.86806 * 120.00458 * 180.02562 * 16 14 11 19 19 H 1.48505 * 109.46927 * 89.99742 * 18 16 14 20 20 H 1.48501 * 109.47038 * 209.99616 * 18 16 14 21 21 H 1.48502 * 109.46701 * 330.00010 * 18 16 14 22 22 N 1.36449 * 107.05603 * 359.73455 * 8 7 6 23 23 C 1.46501 * 127.13712 * 180.26344 * 22 8 7 24 24 C 1.52995 * 109.47283 * 275.64452 * 23 22 8 25 25 H 1.09011 * 109.47125 * 54.69408 * 24 23 22 26 26 F 1.39902 * 109.47531 * 294.69352 * 24 23 22 27 27 C 1.52997 * 109.47365 * 174.68750 * 24 23 22 28 28 O 1.42908 * 109.46714 * 55.00443 * 27 24 23 29 29 C 1.42897 * 113.99746 * 180.02562 * 28 27 24 30 30 H 1.09002 * 109.47188 * 59.99620 * 1 2 3 31 31 H 1.08994 * 109.47876 * 180.02562 * 1 2 3 32 32 H 1.09010 * 109.47045 * 300.00112 * 1 2 3 33 33 H 1.08996 * 109.46857 * 239.99765 * 2 1 3 34 34 H 1.08998 * 109.46759 * 120.00148 * 2 1 3 35 35 H 1.09000 * 109.47291 * 299.99723 * 4 3 2 36 36 H 1.08995 * 109.47555 * 59.99992 * 4 3 2 37 37 H 1.09009 * 109.46641 * 65.43442 * 10 9 8 38 38 H 1.09001 * 109.46998 * 185.42724 * 10 9 8 39 39 H 1.08993 * 109.47368 * 305.43448 * 10 9 8 40 40 H 1.09003 * 109.47234 * 60.00661 * 13 11 9 41 41 H 1.09004 * 109.46925 * 179.97438 * 13 11 9 42 42 H 1.08993 * 109.47515 * 300.00194 * 13 11 9 43 43 H 0.97000 * 119.99937 * 180.02562 * 17 16 14 44 44 H 1.09006 * 109.47093 * 35.64837 * 23 22 8 45 45 H 1.09007 * 109.46752 * 155.64719 * 23 22 8 46 46 H 1.09002 * 109.47414 * 174.99987 * 27 24 23 47 47 H 1.09001 * 109.47663 * 295.00604 * 27 24 23 48 48 H 1.09004 * 109.47365 * 299.99702 * 29 28 27 49 49 H 1.08999 * 109.47292 * 60.00058 * 29 28 27 50 50 H 1.09005 * 109.46777 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4310 1.4600 -0.0006 5 6 3.8196 2.9160 0.0001 6 7 4.0197 3.6613 1.0499 7 7 4.3380 4.8534 0.6898 8 6 4.3576 4.9332 -0.6198 9 7 4.6569 6.0579 -1.3721 10 6 3.6518 7.1098 -1.1693 11 6 6.0058 6.5526 -1.0658 12 1 6.0661 6.8128 -0.0090 13 6 7.0325 5.4632 -1.3820 14 6 6.2952 7.7728 -1.9014 15 1 5.5513 8.1441 -2.5908 16 6 7.5096 8.4153 -1.7859 17 7 8.4153 7.9636 -0.9460 18 14 7.8681 9.9284 -2.8212 19 1 7.4357 11.1445 -2.0867 20 1 9.3256 10.0071 -3.0945 21 1 7.1278 9.8362 -4.1052 22 7 4.0331 3.6983 -1.1009 23 6 3.9314 3.2950 -2.5056 24 6 2.5431 3.6528 -3.0398 25 1 2.3514 4.7128 -2.8725 26 9 1.5764 2.8931 -2.3721 27 6 2.4807 3.3537 -4.5389 28 8 2.8458 1.9913 -4.7684 29 6 2.8205 1.6067 -6.1444 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8901 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 3.8341 0.9763 0.8892 36 1 3.8334 0.9765 -0.8907 37 1 3.6935 7.4580 -0.1372 38 1 3.8565 7.9425 -1.8423 39 1 2.6597 6.7095 -1.3779 40 1 6.9723 5.2029 -2.4388 41 1 8.0334 5.8304 -1.1552 42 1 6.8234 4.5804 -0.7780 43 1 9.2695 8.4159 -0.8645 44 1 4.6906 3.8160 -3.0891 45 1 4.0857 2.2190 -2.5868 46 1 1.4671 3.5243 -4.9017 47 1 3.1715 4.0092 -5.0693 48 1 1.8141 1.7411 -6.5409 49 1 3.5186 2.2260 -6.7077 50 1 3.1100 0.5596 -6.2344 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001516452123.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:14 Heat of formation + Delta-G solvation = -65.267758 kcal Electronic energy + Delta-G solvation = -32715.243994 eV Core-core repulsion = 28307.827908 eV Total energy + Delta-G solvation = -4407.416087 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 344.201 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -48.66864 -44.04267 -39.13425 -38.91178 -38.67171 -36.45204 -34.92663 -32.99893 -32.36586 -31.48894 -30.92436 -28.38452 -27.77240 -27.07266 -26.73041 -26.07311 -23.68706 -23.63891 -22.99417 -21.85759 -21.15015 -18.70440 -18.31721 -18.14947 -17.95335 -17.45037 -17.19086 -16.93165 -16.78829 -16.41615 -16.36959 -16.19911 -16.02100 -15.66460 -15.36060 -14.96871 -14.74566 -14.34397 -14.19624 -13.91056 -13.74544 -13.34363 -13.27125 -13.20406 -13.05651 -12.93600 -12.81548 -12.71524 -12.62451 -12.36555 -12.23971 -12.21282 -12.18715 -12.11562 -12.03693 -12.01887 -11.65086 -11.10154 -11.03723 -10.67916 -10.59169 -10.57606 -10.12588 -9.60304 -8.13217 -6.27601 0.56797 1.16887 1.47606 1.48324 1.58710 1.66439 2.42426 2.64934 2.73473 2.91023 3.18190 3.31435 3.42820 3.50219 3.62182 3.72635 3.88297 4.07348 4.16610 4.21635 4.23821 4.39452 4.41001 4.44621 4.46301 4.55649 4.58686 4.59909 4.62938 4.70025 4.71070 4.76375 4.85460 4.87876 4.91290 4.93847 5.01254 5.08202 5.09323 5.30014 5.36632 5.48752 5.63517 5.82314 5.93645 6.10003 6.13857 6.20209 6.56130 6.83063 7.41820 7.65137 8.94089 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012403 B = 0.003577 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.956774 B = 7826.664053 C = 9234.553818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.053 3.947 3 O -0.397 6.397 4 C 0.163 3.837 5 C 0.179 3.821 6 N -0.310 5.310 7 N -0.358 5.358 8 C 0.372 3.628 9 N -0.461 5.461 10 C 0.052 3.948 11 C 0.234 3.766 12 H -0.029 1.029 13 C -0.113 4.113 14 C -0.520 4.520 15 H 0.078 0.922 16 C 0.013 3.987 17 N -0.922 5.922 18 Si 0.969 3.031 19 H -0.279 1.279 20 H -0.287 1.287 21 H -0.258 1.258 22 N -0.456 5.456 23 C 0.092 3.908 24 C 0.087 3.913 25 H 0.099 0.901 26 F -0.204 7.204 27 C 0.046 3.954 28 O -0.407 6.407 29 C 0.026 3.974 30 H 0.051 0.949 31 H 0.096 0.904 32 H 0.051 0.949 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.015 0.985 38 H 0.098 0.902 39 H 0.069 0.931 40 H 0.045 0.955 41 H 0.067 0.933 42 H -0.002 1.002 43 H 0.263 0.737 44 H 0.120 0.880 45 H 0.124 0.876 46 H 0.081 0.919 47 H 0.091 0.909 48 H 0.051 0.949 49 H 0.053 0.947 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.830 -16.671 -11.096 24.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.023 4.023 3 O -0.316 6.316 4 C 0.084 3.916 5 C -0.089 4.089 6 N -0.152 5.152 7 N -0.202 5.202 8 C 0.015 3.985 9 N -0.187 5.187 10 C -0.095 4.095 11 C 0.129 3.871 12 H -0.011 1.011 13 C -0.171 4.171 14 C -0.558 4.558 15 H 0.096 0.904 16 C -0.186 4.186 17 N -0.561 5.561 18 Si 0.794 3.206 19 H -0.205 1.205 20 H -0.213 1.213 21 H -0.182 1.182 22 N -0.150 5.150 23 C -0.030 4.030 24 C 0.049 3.951 25 H 0.117 0.883 26 F -0.185 7.185 27 C -0.031 4.031 28 O -0.326 6.326 29 C -0.069 4.069 30 H 0.071 0.929 31 H 0.114 0.886 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.115 0.885 36 H 0.109 0.891 37 H 0.033 0.967 38 H 0.116 0.884 39 H 0.088 0.912 40 H 0.064 0.936 41 H 0.086 0.914 42 H 0.017 0.983 43 H 0.072 0.928 44 H 0.138 0.862 45 H 0.142 0.858 46 H 0.099 0.901 47 H 0.109 0.891 48 H 0.070 0.930 49 H 0.071 0.929 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -13.659 -16.368 -9.944 23.524 hybrid contribution 0.600 0.816 -0.614 1.184 sum -13.059 -15.552 -10.558 22.888 Atomic orbital electron populations 1.21730 0.93191 1.03305 1.02164 1.22700 0.96134 0.81995 1.01431 1.88009 1.18996 1.28906 1.95652 1.20504 0.83298 0.83906 1.03888 1.24878 1.04304 0.97443 0.82294 1.73863 1.17284 0.98174 1.25870 1.74611 1.21664 1.13288 1.10612 1.22785 0.99684 0.87887 0.88138 1.59270 1.05930 1.02970 1.50558 1.22255 0.92794 0.94062 1.00407 1.19114 0.80985 0.93440 0.93582 1.01139 1.21576 1.02009 0.95119 0.98399 1.21324 1.01079 1.10189 1.23209 0.90373 1.25780 0.95800 1.00527 0.96517 1.70058 1.07126 1.41517 1.37440 0.85388 0.77128 0.78846 0.79255 1.20502 1.21337 1.18158 1.46433 1.50962 1.08462 1.09097 1.22603 0.99037 1.04314 0.77068 1.22067 0.85343 0.95885 0.91769 0.88297 1.92905 1.64914 1.78284 1.82395 1.23071 1.02522 0.84915 0.92623 1.87854 1.90022 1.26982 1.27759 1.22950 1.01299 1.01887 0.80811 0.92938 0.88581 0.92953 0.91792 0.91818 0.88527 0.89114 0.96658 0.88387 0.91226 0.93607 0.91437 0.98334 0.92811 0.86223 0.85827 0.90096 0.89113 0.93005 0.92861 0.88417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 10.28 71.98 0.74 -1.68 16 2 C 0.05 0.96 6.66 71.98 0.48 1.44 16 3 O -0.40 -10.65 9.73 -148.98 -1.45 -12.10 16 4 C 0.16 4.19 6.30 71.24 0.45 4.64 16 5 C 0.18 6.44 7.70 137.64 1.06 7.50 16 6 N -0.31 -13.72 12.18 -49.54 -0.60 -14.32 16 7 N -0.36 -17.38 12.12 -58.00 -0.70 -18.08 16 8 C 0.37 15.92 5.03 260.11 1.31 17.23 16 9 N -0.46 -19.78 4.66 -711.00 -3.31 -23.09 16 10 C 0.05 2.03 9.15 127.69 1.17 3.20 16 11 C 0.23 12.05 1.99 44.17 0.09 12.13 16 12 H -0.03 -1.78 8.08 -2.39 -0.02 -1.80 16 13 C -0.11 -5.65 8.84 71.98 0.64 -5.01 16 14 C -0.52 -26.98 7.94 25.60 0.20 -26.77 16 15 H 0.08 3.80 6.40 -2.91 -0.02 3.78 16 16 C 0.01 0.69 5.30 84.65 0.45 1.14 16 17 N -0.92 -52.72 11.32 21.45 0.24 -52.47 16 18 Si 0.97 41.53 29.54 68.60 2.03 43.56 16 19 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 20 H -0.29 -12.30 7.11 99.48 0.71 -11.60 16 21 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 22 N -0.46 -16.03 2.80 -514.84 -1.44 -17.47 16 23 C 0.09 2.41 5.52 86.38 0.48 2.89 16 24 C 0.09 2.02 3.99 30.59 0.12 2.14 16 25 H 0.10 2.42 8.14 -2.38 -0.02 2.40 16 26 F -0.20 -5.74 16.47 44.97 0.74 -5.00 16 27 C 0.05 0.78 5.89 71.98 0.42 1.20 16 28 O -0.41 -7.32 9.92 -148.98 -1.48 -8.80 16 29 C 0.03 0.30 11.01 113.37 1.25 1.55 16 30 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 33 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.09 1.83 7.17 -2.39 -0.02 1.81 16 37 H 0.01 0.64 8.14 -2.38 -0.02 0.62 16 38 H 0.10 3.64 6.29 -2.39 -0.02 3.63 16 39 H 0.07 2.31 8.11 -2.39 -0.02 2.29 16 40 H 0.04 2.10 8.14 -2.39 -0.02 2.09 16 41 H 0.07 3.74 6.07 -2.38 -0.01 3.72 16 42 H 0.00 -0.12 7.22 -2.39 -0.02 -0.14 16 43 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 44 H 0.12 3.13 8.14 -2.38 -0.02 3.11 16 45 H 0.12 2.80 6.70 -2.38 -0.02 2.78 16 46 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 47 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 48 H 0.05 0.49 8.14 -2.38 -0.02 0.47 16 49 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 50 H 0.10 0.89 8.14 -2.38 -0.02 0.88 16 Total: -1.00 -73.35 412.14 3.80 -69.56 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: 0.92 Total: 16.62 kcal Atomic # 6 Polarization: 12.74 SS G_CDS: 8.85 Total: 21.59 kcal Atomic # 7 Polarization: -119.62 SS G_CDS: -5.81 Total: -125.44 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: -2.93 Total: -20.90 kcal Atomic # 9 Polarization: -5.74 SS G_CDS: 0.74 Total: -5.00 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Total: -73.35 3.80 -69.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001516452123.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.287 kcal (2) G-P(sol) polarization free energy of solvation -73.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds