Wall clock time and date at job start Wed Apr 1 2020 03:58:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 O 1.42897 * 109.47103 * 2 1
4 4 C 1.42901 * 114.00200 * 179.97438 * 3 2 1
5 5 C 1.50699 * 109.47525 * 179.97438 * 4 3 2
6 6 N 1.30291 * 126.35006 * 269.69346 * 5 4 3
7 7 N 1.28522 * 110.05625 * 180.26214 * 6 5 4
8 8 C 1.31219 * 109.86140 * 359.97438 * 7 6 5
9 9 N 1.38580 * 126.47418 * 179.97438 * 8 7 6
10 10 C 1.46900 * 110.99719 * 249.83782 * 9 8 7
11 11 C 1.46900 * 111.00228 * 13.79061 * 9 8 7
12 12 H 1.09000 * 109.46674 * 54.99763 * 11 9 8
13 13 C 1.53002 * 109.46852 * 295.00258 * 11 9 8
14 14 C 1.50698 * 109.47178 * 175.00140 * 11 9 8
15 15 H 1.07998 * 119.99719 * 0.02562 * 14 11 9
16 16 C 1.37871 * 119.99789 * 179.97438 * 14 11 9
17 17 N 1.31516 * 120.00526 * 0.02562 * 16 14 11
18 18 Si 1.86798 * 119.99931 * 179.97438 * 16 14 11
19 19 H 1.48504 * 109.47014 * 60.00786 * 18 16 14
20 20 H 1.48501 * 109.47581 * 180.02562 * 18 16 14
21 21 H 1.48501 * 109.47731 * 300.00484 * 18 16 14
22 22 N 1.36453 * 107.05243 * 0.02562 * 8 7 6
23 23 C 1.46505 * 127.13803 * 179.97438 * 22 8 7
24 24 C 1.52992 * 109.46939 * 84.69508 * 23 22 8
25 25 H 1.08997 * 109.47531 * 304.66305 * 24 23 22
26 26 F 1.39903 * 109.47380 * 64.66945 * 24 23 22
27 27 C 1.53002 * 109.47052 * 184.66261 * 24 23 22
28 28 O 1.42909 * 109.46666 * 55.00024 * 27 24 23
29 29 C 1.42901 * 113.99624 * 180.02562 * 28 27 24
30 30 H 1.09000 * 109.47136 * 300.00452 * 1 2 3
31 31 H 1.08999 * 109.46739 * 60.00603 * 1 2 3
32 32 H 1.09002 * 109.46846 * 179.97438 * 1 2 3
33 33 H 1.09000 * 109.47136 * 239.99548 * 2 1 3
34 34 H 1.08997 * 109.47217 * 119.99988 * 2 1 3
35 35 H 1.09002 * 109.47245 * 59.99365 * 4 3 2
36 36 H 1.09005 * 109.46738 * 300.00294 * 4 3 2
37 37 H 1.09003 * 109.47032 * 53.12929 * 10 9 8
38 38 H 1.09000 * 109.47640 * 173.12950 * 10 9 8
39 39 H 1.09005 * 109.47420 * 293.13154 * 10 9 8
40 40 H 1.09000 * 109.47058 * 60.00310 * 13 11 9
41 41 H 1.09003 * 109.46677 * 179.97438 * 13 11 9
42 42 H 1.08995 * 109.47217 * 299.99994 * 13 11 9
43 43 H 0.96997 * 120.00452 * 179.97438 * 17 16 14
44 44 H 1.08997 * 109.46704 * 204.69805 * 23 22 8
45 45 H 1.08997 * 109.46810 * 324.69636 * 23 22 8
46 46 H 1.08998 * 109.47871 * 174.99903 * 27 24 23
47 47 H 1.08997 * 109.47392 * 295.00650 * 27 24 23
48 48 H 1.09009 * 109.47300 * 299.99888 * 29 28 27
49 49 H 1.08993 * 109.47559 * 59.99831 * 29 28 27
50 50 H 1.09003 * 109.47088 * 180.02562 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0064 1.3472 0.0000
4 6 3.4309 1.4601 0.0006
5 6 3.8195 2.9161 -0.0001
6 7 4.0246 3.6602 -1.0498
7 7 4.3460 4.8514 -0.6898
8 6 4.3629 4.9320 0.6198
9 7 4.6651 6.0558 1.3722
10 6 5.9537 5.8982 2.0597
11 6 4.6578 7.2652 0.5383
12 1 3.6991 7.3477 0.0263
13 6 5.7823 7.1785 -0.4956
14 6 4.8684 8.4770 1.4090
15 1 4.9953 8.3604 2.4752
16 6 4.9000 9.7344 0.8444
17 7 4.7459 9.8764 -0.4539
18 14 5.1602 11.2366 1.9238
19 1 6.4660 11.1241 2.6221
20 1 5.1530 12.4592 1.0809
21 1 4.0682 11.3210 2.9266
22 7 4.0278 3.6998 1.1009
23 6 3.9147 3.2995 2.5057
24 6 2.5223 3.6589 3.0279
25 1 2.3369 4.7209 2.8672
26 9 1.5597 2.9087 2.3439
27 6 2.4427 3.3480 4.5238
28 8 3.4998 4.0240 5.2077
29 6 3.5167 3.7987 6.6188
30 1 -0.3633 0.5139 0.8899
31 1 -0.3633 0.5137 -0.8900
32 1 -0.3633 -1.0277 -0.0005
33 1 1.8934 -0.5139 -0.8899
34 1 1.8934 -0.5138 0.8900
35 1 3.8341 0.9764 -0.8891
36 1 3.8333 0.9767 0.8908
37 1 6.7215 5.6276 1.3348
38 1 6.2250 6.8367 2.5430
39 1 5.8709 5.1131 2.8113
40 1 5.6300 6.3020 -1.1254
41 1 5.7766 8.0757 -1.1146
42 1 6.7410 7.0959 0.0163
43 1 4.7678 10.7611 -0.8511
44 1 4.0681 2.2237 2.5903
45 1 4.6693 3.8215 3.0940
46 1 1.4828 3.6856 4.9147
47 1 2.5397 2.2732 4.6772
48 1 2.5790 4.1454 7.0534
49 1 3.6361 2.7333 6.8153
50 1 4.3474 4.3461 7.0642
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001516452124.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:58:18
Heat of formation + Delta-G solvation = -33.654234 kcal
Electronic energy + Delta-G solvation = -32682.038484 eV
Core-core repulsion = 28275.993262 eV
Total energy + Delta-G solvation = -4406.045221 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 344.201 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-47.71889 -42.48920 -38.28745 -38.08633 -37.21809 -35.18468 -32.83307 -31.97125
-31.29275 -29.90863 -28.66822 -27.42068 -26.61524 -25.86470 -25.11301 -24.79991
-22.90300 -22.21765 -21.58959 -20.47352 -19.45480 -17.39890 -17.16305 -16.97287
-16.42219 -16.23122 -16.08701 -15.83776 -15.49878 -15.40674 -15.27262 -14.92216
-14.54219 -14.42565 -13.85055 -13.78261 -13.40544 -13.21230 -12.90702 -12.80832
-12.55207 -12.47098 -12.28555 -11.82657 -11.61955 -11.60134 -11.51403 -11.37443
-11.23238 -11.14571 -10.98074 -10.86806 -10.73340 -10.38669 -10.17187 -10.09697
-10.02899 -9.79714 -9.69645 -9.62541 -8.90922 -8.76339 -8.36696 -7.43404
-5.99530 -4.06938 2.03357 2.58404 3.23921 3.25634 3.32383 3.37545
3.38968 3.83908 4.21657 4.32577 4.45596 4.51452 4.60231 4.67246
4.76309 4.82738 4.91538 4.98130 5.03447 5.05125 5.09654 5.18867
5.20905 5.22807 5.31406 5.39061 5.45427 5.54021 5.61573 5.70559
5.77452 5.91682 6.00362 6.08211 6.21505 6.35085 6.54668 6.75073
6.84163 6.97435 7.09580 7.19277 7.35902 7.52043 7.70207 7.77705
8.00796 8.34739 8.50055 8.94425 9.34036 9.57266 11.06605
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.010640 B = 0.003819 C = 0.003092
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2630.905794 B = 7329.105421 C = 9052.699233
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C 0.060 3.940
3 O -0.371 6.371
4 C 0.164 3.836
5 C 0.151 3.849
6 N -0.267 5.267
7 N -0.310 5.310
8 C 0.391 3.609
9 N -0.455 5.455
10 C 0.036 3.964
11 C 0.229 3.771
12 H 0.049 0.951
13 C -0.178 4.178
14 C -0.514 4.514
15 H 0.064 0.936
16 C 0.064 3.936
17 N -0.884 5.884
18 Si 0.899 3.101
19 H -0.277 1.277
20 H -0.287 1.287
21 H -0.277 1.277
22 N -0.478 5.478
23 C 0.095 3.905
24 C 0.080 3.920
25 H 0.108 0.892
26 F -0.188 7.188
27 C 0.043 3.957
28 O -0.379 6.379
29 C 0.033 3.967
30 H 0.063 0.937
31 H 0.064 0.936
32 H 0.068 0.932
33 H 0.049 0.951
34 H 0.045 0.955
35 H 0.081 0.919
36 H 0.059 0.941
37 H 0.031 0.969
38 H 0.098 0.902
39 H 0.048 0.952
40 H 0.051 0.949
41 H 0.088 0.912
42 H 0.020 0.980
43 H 0.263 0.737
44 H 0.095 0.905
45 H 0.122 0.878
46 H 0.068 0.932
47 H 0.061 0.939
48 H 0.044 0.956
49 H 0.041 0.959
50 H 0.091 0.909
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.336 -20.719 11.416 23.890
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.017 4.017
3 O -0.289 6.289
4 C 0.085 3.915
5 C -0.116 4.116
6 N -0.108 5.108
7 N -0.154 5.154
8 C 0.036 3.964
9 N -0.179 5.179
10 C -0.111 4.111
11 C 0.125 3.875
12 H 0.067 0.933
13 C -0.238 4.238
14 C -0.553 4.553
15 H 0.082 0.918
16 C -0.139 4.139
17 N -0.522 5.522
18 Si 0.727 3.273
19 H -0.203 1.203
20 H -0.213 1.213
21 H -0.202 1.202
22 N -0.175 5.175
23 C -0.029 4.029
24 C 0.042 3.958
25 H 0.126 0.874
26 F -0.168 7.168
27 C -0.035 4.035
28 O -0.298 6.298
29 C -0.063 4.063
30 H 0.082 0.918
31 H 0.083 0.917
32 H 0.087 0.913
33 H 0.067 0.933
34 H 0.064 0.936
35 H 0.099 0.901
36 H 0.077 0.923
37 H 0.050 0.950
38 H 0.117 0.883
39 H 0.066 0.934
40 H 0.070 0.930
41 H 0.107 0.893
42 H 0.039 0.961
43 H 0.073 0.927
44 H 0.113 0.887
45 H 0.140 0.860
46 H 0.086 0.914
47 H 0.079 0.921
48 H 0.062 0.938
49 H 0.060 0.940
50 H 0.110 0.890
Dipole moment (debyes) X Y Z Total
from point charges -3.608 -19.832 10.075 22.536
hybrid contribution 0.385 0.048 1.659 1.703
sum -3.223 -19.784 11.734 23.227
Atomic orbital electron populations
1.21715 0.93670 1.01868 1.03469 1.22435 0.95789 0.83698 0.99790
1.88091 1.19346 1.26125 1.95306 1.20248 0.82741 0.86996 1.01479
1.23898 1.08782 0.95894 0.83016 1.73963 1.14374 0.98329 1.24131
1.74935 1.22221 1.10821 1.07438 1.23320 0.98980 0.84729 0.89407
1.59391 1.30454 0.99330 1.28757 1.22378 0.88287 1.03219 0.97251
1.19368 0.96697 0.81920 0.89490 0.93338 1.22544 0.97322 1.03204
1.00707 1.20990 1.50502 0.89951 0.93823 0.91801 1.24886 0.95134
0.98818 0.95020 1.69916 1.49210 1.23251 1.09806 0.86550 0.78641
0.81918 0.80185 1.20302 1.21313 1.20240 1.46107 1.53901 1.10197
1.07328 1.22372 0.98632 1.02268 0.79626 1.21725 0.86381 0.97933
0.89726 0.87387 1.92929 1.65041 1.78475 1.80404 1.22927 0.91998
0.97082 0.91463 1.87900 1.50188 1.71631 1.20100 1.22793 1.02359
1.00460 0.80719 0.91754 0.91730 0.91317 0.93318 0.93644 0.90089
0.92308 0.95020 0.88299 0.93364 0.92990 0.89348 0.96113 0.92737
0.88715 0.85999 0.91403 0.92078 0.93771 0.94005 0.89032
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.33 10.28 37.16 0.38 -0.95 16
2 C 0.06 0.57 6.66 37.16 0.25 0.82 16
3 O -0.37 -5.14 9.68 -35.23 -0.34 -5.48 16
4 C 0.16 2.13 6.29 36.01 0.23 2.36 16
5 C 0.15 2.68 7.70 -154.02 -1.19 1.49 16
6 N -0.27 -5.76 12.18 32.99 0.40 -5.36 16
7 N -0.31 -7.34 8.97 30.31 0.27 -7.07 16
8 C 0.39 8.36 6.66 -318.87 -2.12 6.24 16
9 N -0.46 -10.00 4.77 -176.08 -0.84 -10.84 16
10 C 0.04 0.67 8.55 60.06 0.51 1.19 16
11 C 0.23 5.96 2.08 -68.86 -0.14 5.82 16
12 H 0.05 1.45 8.11 -51.93 -0.42 1.03 16
13 C -0.18 -4.61 8.28 37.16 0.31 -4.30 16
14 C -0.51 -13.84 7.79 -34.44 -0.27 -14.11 16
15 H 0.06 1.66 6.83 -52.49 -0.36 1.31 16
16 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16
17 N -0.88 -25.50 11.32 55.43 0.63 -24.87 16
18 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16
19 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16
20 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16
21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16
22 N -0.48 -8.34 2.79 -114.09 -0.32 -8.66 16
23 C 0.10 1.25 5.64 -4.04 -0.02 1.22 16
24 C 0.08 1.05 3.99 -26.73 -0.11 0.94 16
25 H 0.11 1.71 8.14 -51.93 -0.42 1.29 16
26 F -0.19 -2.75 16.41 2.25 0.04 -2.71 16
27 C 0.04 0.43 5.89 37.16 0.22 0.64 16
28 O -0.38 -4.09 9.74 -35.23 -0.34 -4.43 16
29 C 0.03 0.24 11.01 101.05 1.11 1.36 16
30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16
31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16
32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16
33 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16
34 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16
35 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16
36 H 0.06 0.59 7.19 -51.93 -0.37 0.22 16
37 H 0.03 0.60 6.87 -51.93 -0.36 0.25 16
38 H 0.10 1.94 6.26 -51.93 -0.33 1.61 16
39 H 0.05 0.75 5.89 -51.93 -0.31 0.44 16
40 H 0.05 1.34 5.41 -51.93 -0.28 1.06 16
41 H 0.09 2.50 6.07 -51.93 -0.32 2.18 16
42 H 0.02 0.50 6.64 -51.93 -0.34 0.15 16
43 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16
44 H 0.09 0.97 7.11 -51.93 -0.37 0.60 16
45 H 0.12 1.57 5.08 -51.93 -0.26 1.31 16
46 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16
47 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16
48 H 0.04 0.29 8.14 -51.92 -0.42 -0.13 16
49 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16
50 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16
LS Contribution 400.29 15.07 6.03 6.03
Total: -1.00 -33.65 400.29 -8.35 -42.00
By element:
Atomic # 1 Polarization: 8.89 SS G_CDS: -7.92 Total: 0.97 kcal
Atomic # 6 Polarization: 5.31 SS G_CDS: -0.94 Total: 4.38 kcal
Atomic # 7 Polarization: -56.94 SS G_CDS: 0.14 Total: -56.80 kcal
Atomic # 8 Polarization: -9.23 SS G_CDS: -0.68 Total: -9.91 kcal
Atomic # 9 Polarization: -2.75 SS G_CDS: 0.04 Total: -2.71 kcal
Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal
Total LS contribution 6.03 Total: 6.03 kcal
Total: -33.65 -8.35 -42.00 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001516452124.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 8.349 kcal
(2) G-P(sol) polarization free energy of solvation -33.652 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.303 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.351 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.003 kcal
(6) G-S(sol) free energy of system = (1) + (5) -33.654 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds