Wall clock time and date at job start Wed Apr 1 2020 03:58:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 O 1.42897 * 109.47103 * 2 1
4 4 C 1.42901 * 114.00200 * 179.97438 * 3 2 1
5 5 C 1.50699 * 109.47525 * 179.97438 * 4 3 2
6 6 N 1.30291 * 126.35006 * 269.69346 * 5 4 3
7 7 N 1.28522 * 110.05625 * 180.26214 * 6 5 4
8 8 C 1.31219 * 109.86140 * 359.97438 * 7 6 5
9 9 N 1.38580 * 126.47418 * 179.97438 * 8 7 6
10 10 C 1.46900 * 110.99719 * 249.83782 * 9 8 7
11 11 C 1.46900 * 111.00228 * 13.79061 * 9 8 7
12 12 H 1.09000 * 109.46674 * 54.99763 * 11 9 8
13 13 C 1.53002 * 109.46852 * 295.00258 * 11 9 8
14 14 C 1.50698 * 109.47178 * 175.00140 * 11 9 8
15 15 H 1.07998 * 119.99719 * 0.02562 * 14 11 9
16 16 C 1.37871 * 119.99789 * 179.97438 * 14 11 9
17 17 N 1.31516 * 120.00526 * 0.02562 * 16 14 11
18 18 Si 1.86798 * 119.99931 * 179.97438 * 16 14 11
19 19 H 1.48504 * 109.47014 * 60.00786 * 18 16 14
20 20 H 1.48501 * 109.47581 * 180.02562 * 18 16 14
21 21 H 1.48501 * 109.47731 * 300.00484 * 18 16 14
22 22 N 1.36453 * 107.05243 * 0.02562 * 8 7 6
23 23 C 1.46505 * 127.13803 * 179.97438 * 22 8 7
24 24 C 1.52992 * 109.46939 * 84.69508 * 23 22 8
25 25 H 1.08997 * 109.47531 * 304.66305 * 24 23 22
26 26 F 1.39903 * 109.47380 * 64.66945 * 24 23 22
27 27 C 1.53002 * 109.47052 * 184.66261 * 24 23 22
28 28 O 1.42909 * 109.46666 * 55.00024 * 27 24 23
29 29 C 1.42901 * 113.99624 * 180.02562 * 28 27 24
30 30 H 1.09000 * 109.47136 * 300.00452 * 1 2 3
31 31 H 1.08999 * 109.46739 * 60.00603 * 1 2 3
32 32 H 1.09002 * 109.46846 * 179.97438 * 1 2 3
33 33 H 1.09000 * 109.47136 * 239.99548 * 2 1 3
34 34 H 1.08997 * 109.47217 * 119.99988 * 2 1 3
35 35 H 1.09002 * 109.47245 * 59.99365 * 4 3 2
36 36 H 1.09005 * 109.46738 * 300.00294 * 4 3 2
37 37 H 1.09003 * 109.47032 * 53.12929 * 10 9 8
38 38 H 1.09000 * 109.47640 * 173.12950 * 10 9 8
39 39 H 1.09005 * 109.47420 * 293.13154 * 10 9 8
40 40 H 1.09000 * 109.47058 * 60.00310 * 13 11 9
41 41 H 1.09003 * 109.46677 * 179.97438 * 13 11 9
42 42 H 1.08995 * 109.47217 * 299.99994 * 13 11 9
43 43 H 0.96997 * 120.00452 * 179.97438 * 17 16 14
44 44 H 1.08997 * 109.46704 * 204.69805 * 23 22 8
45 45 H 1.08997 * 109.46810 * 324.69636 * 23 22 8
46 46 H 1.08998 * 109.47871 * 174.99903 * 27 24 23
47 47 H 1.08997 * 109.47392 * 295.00650 * 27 24 23
48 48 H 1.09009 * 109.47300 * 299.99888 * 29 28 27
49 49 H 1.08993 * 109.47559 * 59.99831 * 29 28 27
50 50 H 1.09003 * 109.47088 * 180.02562 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0064 1.3472 0.0000
4 6 3.4309 1.4601 0.0006
5 6 3.8195 2.9161 -0.0001
6 7 4.0246 3.6602 -1.0498
7 7 4.3460 4.8514 -0.6898
8 6 4.3629 4.9320 0.6198
9 7 4.6651 6.0558 1.3722
10 6 5.9537 5.8982 2.0597
11 6 4.6578 7.2652 0.5383
12 1 3.6991 7.3477 0.0263
13 6 5.7823 7.1785 -0.4956
14 6 4.8684 8.4770 1.4090
15 1 4.9953 8.3604 2.4752
16 6 4.9000 9.7344 0.8444
17 7 4.7459 9.8764 -0.4539
18 14 5.1602 11.2366 1.9238
19 1 6.4660 11.1241 2.6221
20 1 5.1530 12.4592 1.0809
21 1 4.0682 11.3210 2.9266
22 7 4.0278 3.6998 1.1009
23 6 3.9147 3.2995 2.5057
24 6 2.5223 3.6589 3.0279
25 1 2.3369 4.7209 2.8672
26 9 1.5597 2.9087 2.3439
27 6 2.4427 3.3480 4.5238
28 8 3.4998 4.0240 5.2077
29 6 3.5167 3.7987 6.6188
30 1 -0.3633 0.5139 0.8899
31 1 -0.3633 0.5137 -0.8900
32 1 -0.3633 -1.0277 -0.0005
33 1 1.8934 -0.5139 -0.8899
34 1 1.8934 -0.5138 0.8900
35 1 3.8341 0.9764 -0.8891
36 1 3.8333 0.9767 0.8908
37 1 6.7215 5.6276 1.3348
38 1 6.2250 6.8367 2.5430
39 1 5.8709 5.1131 2.8113
40 1 5.6300 6.3020 -1.1254
41 1 5.7766 8.0757 -1.1146
42 1 6.7410 7.0959 0.0163
43 1 4.7678 10.7611 -0.8511
44 1 4.0681 2.2237 2.5903
45 1 4.6693 3.8215 3.0940
46 1 1.4828 3.6856 4.9147
47 1 2.5397 2.2732 4.6772
48 1 2.5790 4.1454 7.0534
49 1 3.6361 2.7333 6.8153
50 1 4.3474 4.3461 7.0642
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001516452124.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:58:18
Heat of formation + Delta-G solvation = -54.896684 kcal
Electronic energy + Delta-G solvation = -32682.959625 eV
Core-core repulsion = 28275.993262 eV
Total energy + Delta-G solvation = -4406.966363 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 344.201 amu
Computer time = 0.88 seconds
Orbital eigenvalues (eV)
-48.81017 -44.00582 -39.24958 -39.03022 -38.78059 -36.48750 -34.82374 -32.96020
-32.35645 -31.25087 -30.54899 -28.47183 -27.76161 -27.18708 -26.66397 -26.36308
-23.63432 -23.59931 -22.99561 -21.83345 -21.17307 -18.64844 -18.18038 -18.11575
-17.93954 -17.41510 -17.32640 -16.89617 -16.76503 -16.61410 -16.36793 -16.16499
-16.05681 -15.70047 -15.32658 -14.96269 -14.66522 -14.36729 -14.25505 -13.91340
-13.66852 -13.47710 -13.38206 -13.20611 -13.08186 -12.94915 -12.79448 -12.66291
-12.53623 -12.36226 -12.33394 -12.21516 -12.10130 -12.08376 -11.95529 -11.92641
-11.47993 -11.09117 -10.85628 -10.67087 -10.58112 -10.52011 -10.47526 -9.15025
-8.10261 -6.25762 0.62721 1.21137 1.45777 1.48484 1.56021 1.74772
2.42644 2.50648 2.78745 2.96015 3.18856 3.22341 3.44497 3.51690
3.69469 3.74539 3.90982 4.00971 4.09431 4.22669 4.24644 4.35698
4.41204 4.42307 4.48929 4.53446 4.56904 4.58618 4.60683 4.65308
4.70622 4.81376 4.88522 4.93544 4.97904 5.04872 5.08818 5.14136
5.29394 5.31110 5.41663 5.60072 5.64374 5.82236 6.02971 6.10629
6.23810 6.24667 6.58132 6.83439 7.42932 7.77925 8.96154
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.010640 B = 0.003819 C = 0.003092
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2630.905794 B = 7329.105421 C = 9052.699233
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C 0.054 3.946
3 O -0.403 6.403
4 C 0.164 3.836
5 C 0.173 3.827
6 N -0.313 5.313
7 N -0.358 5.358
8 C 0.373 3.627
9 N -0.456 5.456
10 C 0.040 3.960
11 C 0.242 3.758
12 H -0.005 1.005
13 C -0.160 4.160
14 C -0.524 4.524
15 H 0.073 0.927
16 C 0.012 3.988
17 N -0.920 5.920
18 Si 0.970 3.030
19 H -0.263 1.263
20 H -0.288 1.288
21 H -0.270 1.270
22 N -0.470 5.470
23 C 0.090 3.910
24 C 0.080 3.920
25 H 0.070 0.930
26 F -0.197 7.197
27 C 0.054 3.946
28 O -0.405 6.405
29 C 0.027 3.973
30 H 0.052 0.948
31 H 0.047 0.953
32 H 0.096 0.904
33 H 0.063 0.937
34 H 0.071 0.929
35 H 0.097 0.903
36 H 0.100 0.900
37 H 0.024 0.976
38 H 0.091 0.909
39 H 0.086 0.914
40 H 0.048 0.952
41 H 0.059 0.941
42 H 0.029 0.971
43 H 0.262 0.738
44 H 0.136 0.864
45 H 0.127 0.873
46 H 0.073 0.927
47 H 0.092 0.908
48 H 0.049 0.951
49 H 0.062 0.938
50 H 0.096 0.904
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.922 -23.386 14.529 27.687
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.022 4.022
3 O -0.321 6.321
4 C 0.085 3.915
5 C -0.096 4.096
6 N -0.153 5.153
7 N -0.202 5.202
8 C 0.016 3.984
9 N -0.179 5.179
10 C -0.107 4.107
11 C 0.136 3.864
12 H 0.013 0.987
13 C -0.220 4.220
14 C -0.562 4.562
15 H 0.091 0.909
16 C -0.187 4.187
17 N -0.559 5.559
18 Si 0.794 3.206
19 H -0.188 1.188
20 H -0.214 1.214
21 H -0.196 1.196
22 N -0.165 5.165
23 C -0.032 4.032
24 C 0.043 3.957
25 H 0.088 0.912
26 F -0.178 7.178
27 C -0.024 4.024
28 O -0.324 6.324
29 C -0.068 4.068
30 H 0.071 0.929
31 H 0.066 0.934
32 H 0.115 0.885
33 H 0.081 0.919
34 H 0.089 0.911
35 H 0.115 0.885
36 H 0.118 0.882
37 H 0.043 0.957
38 H 0.110 0.890
39 H 0.105 0.895
40 H 0.067 0.933
41 H 0.078 0.922
42 H 0.048 0.952
43 H 0.071 0.929
44 H 0.154 0.846
45 H 0.145 0.855
46 H 0.091 0.909
47 H 0.110 0.890
48 H 0.067 0.933
49 H 0.081 0.919
50 H 0.114 0.886
Dipole moment (debyes) X Y Z Total
from point charges -3.196 -22.541 13.222 26.328
hybrid contribution 0.169 0.717 0.699 1.015
sum -3.026 -21.824 13.921 26.063
Atomic orbital electron populations
1.21753 0.93602 1.03262 1.02074 1.22704 0.95855 0.81964 1.01692
1.88042 1.19450 1.28971 1.95685 1.20546 0.83016 0.83685 1.04235
1.24902 1.05209 0.97401 0.82073 1.73856 1.17056 0.98275 1.26147
1.74754 1.23751 1.12478 1.09203 1.23176 1.00072 0.85921 0.89195
1.59263 1.32182 0.98510 1.27969 1.22432 0.86624 1.04144 0.97495
1.18924 0.93793 0.84008 0.89632 0.98674 1.22325 0.97791 1.01539
1.00332 1.21282 1.50168 0.90469 0.94276 0.90900 1.25797 0.94703
1.02016 0.96228 1.70089 1.50195 1.23824 1.11758 0.85438 0.79156
0.77687 0.78286 1.18788 1.21422 1.19553 1.46277 1.52650 1.08531
1.09084 1.22765 0.98708 1.04752 0.76996 1.21680 0.86030 0.95825
0.92187 0.91187 1.92911 1.65480 1.78400 1.80986 1.22832 0.92212
0.98723 0.88650 1.87855 1.50404 1.72300 1.21890 1.22979 1.02915
1.02018 0.78924 0.92859 0.93411 0.88513 0.91909 0.91088 0.88550
0.88232 0.95683 0.89035 0.89547 0.93322 0.92207 0.95234 0.92870
0.84595 0.85519 0.90861 0.88995 0.93269 0.91907 0.88565
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.37 10.28 71.98 0.74 -1.63 16
2 C 0.05 0.86 6.66 71.98 0.48 1.34 16
3 O -0.40 -10.29 9.68 -148.98 -1.44 -11.73 16
4 C 0.16 3.77 6.29 71.24 0.45 4.22 16
5 C 0.17 5.99 7.70 137.64 1.06 7.05 16
6 N -0.31 -13.90 12.18 -49.54 -0.60 -14.51 16
7 N -0.36 -17.77 8.97 -58.00 -0.52 -18.29 16
8 C 0.37 16.38 6.66 260.11 1.73 18.11 16
9 N -0.46 -20.51 4.77 -710.99 -3.39 -23.91 16
10 C 0.04 1.47 8.55 127.69 1.09 2.56 16
11 C 0.24 13.22 2.08 44.17 0.09 13.31 16
12 H 0.00 -0.30 8.11 -2.39 -0.02 -0.32 16
13 C -0.16 -8.71 8.28 71.98 0.60 -8.12 16
14 C -0.52 -28.86 7.79 25.60 0.20 -28.66 16
15 H 0.07 3.80 6.83 -2.91 -0.02 3.78 16
16 C 0.01 0.66 5.30 84.65 0.45 1.11 16
17 N -0.92 -55.14 11.32 21.45 0.24 -54.90 16
18 Si 0.97 43.54 29.54 68.60 2.03 45.57 16
19 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16
20 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16
21 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16
22 N -0.47 -15.99 2.79 -514.86 -1.44 -17.42 16
23 C 0.09 2.12 5.64 86.38 0.49 2.61 16
24 C 0.08 1.99 3.99 30.59 0.12 2.11 16
25 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16
26 F -0.20 -5.47 16.41 44.97 0.74 -4.74 16
27 C 0.05 0.90 5.89 71.98 0.42 1.32 16
28 O -0.40 -7.61 9.74 -148.98 -1.45 -9.07 16
29 C 0.03 0.32 11.01 113.37 1.25 1.57 16
30 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16
31 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16
32 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16
33 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16
34 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16
35 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16
36 H 0.10 1.48 7.19 -2.38 -0.02 1.46 16
37 H 0.02 0.95 6.87 -2.39 -0.02 0.93 16
38 H 0.09 3.53 6.26 -2.39 -0.01 3.51 16
39 H 0.09 2.51 5.89 -2.38 -0.01 2.50 16
40 H 0.05 2.65 5.41 -2.39 -0.01 2.64 16
41 H 0.06 3.57 6.07 -2.39 -0.01 3.56 16
42 H 0.03 1.48 6.64 -2.39 -0.02 1.46 16
43 H 0.26 14.96 8.31 -92.71 -0.77 14.18 16
44 H 0.14 2.11 7.11 -2.39 -0.02 2.09 16
45 H 0.13 2.90 5.08 -2.39 -0.01 2.89 16
46 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16
47 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16
48 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16
49 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16
50 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16
Total: -1.00 -78.86 400.29 4.27 -74.59
By element:
Atomic # 1 Polarization: 16.56 SS G_CDS: 0.94 Total: 17.50 kcal
Atomic # 6 Polarization: 7.74 SS G_CDS: 9.17 Total: 16.91 kcal
Atomic # 7 Polarization: -123.32 SS G_CDS: -5.71 Total: -129.03 kcal
Atomic # 8 Polarization: -17.91 SS G_CDS: -2.89 Total: -20.80 kcal
Atomic # 9 Polarization: -5.47 SS G_CDS: 0.74 Total: -4.74 kcal
Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal
Total: -78.86 4.27 -74.59 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001516452124.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 19.691 kcal
(2) G-P(sol) polarization free energy of solvation -78.857 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.166 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.270 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.588 kcal
(6) G-S(sol) free energy of system = (1) + (5) -54.897 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.89 seconds