Wall clock time and date at job start Wed Apr 1 2020 03:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47485 * 2 1 4 4 N 1.46505 * 109.46915 * 240.00019 * 2 1 3 5 5 C 1.36941 * 120.00086 * 84.99959 * 4 2 1 6 6 H 1.08005 * 119.99631 * 0.02562 * 5 4 2 7 7 C 1.38811 * 119.99962 * 180.02562 * 5 4 2 8 8 N 1.31626 * 119.99738 * 180.02562 * 7 5 4 9 9 Si 1.86793 * 120.00089 * 359.97438 * 7 5 4 10 10 H 1.48510 * 109.47078 * 90.00163 * 9 7 5 11 11 H 1.48504 * 109.47207 * 209.99653 * 9 7 5 12 12 H 1.48498 * 109.47608 * 330.00107 * 9 7 5 13 13 C 1.52995 * 109.47361 * 120.00370 * 2 1 3 14 14 H 1.08997 * 109.50039 * 60.05982 * 13 2 1 15 15 C 1.53044 * 109.49600 * 299.99780 * 13 2 1 16 16 C 1.53035 * 109.53876 * 178.68436 * 15 13 2 17 17 C 1.53195 * 109.31547 * 61.36185 * 16 15 13 18 18 N 1.46923 * 108.77546 * 305.36682 * 17 16 15 19 19 C 1.34772 * 120.62912 * 233.58399 * 18 17 16 20 20 O 1.21554 * 119.99896 * 174.18272 * 19 18 17 21 21 C 1.47830 * 120.00626 * 354.18071 * 19 18 17 22 22 C 1.39954 * 120.93620 * 320.04009 * 21 19 18 23 23 N 1.32150 * 118.91985 * 179.70827 * 22 21 19 24 24 C 1.31865 * 120.96884 * 0.57409 * 23 22 21 25 25 C 1.50698 * 118.95401 * 179.67537 * 24 23 22 26 26 C 1.53004 * 117.49678 * 8.76642 * 25 24 23 27 27 C 1.53001 * 117.50084 * 300.10851 * 25 24 23 28 28 N 1.31870 * 122.09645 * 359.69351 * 24 23 22 29 29 C 1.32147 * 120.96879 * 0.02562 * 28 24 23 30 30 C 1.46931 * 118.73865 * 53.60708 * 18 17 16 31 31 H 1.09001 * 109.46622 * 299.99707 * 1 2 3 32 32 H 1.08998 * 109.47568 * 59.99561 * 1 2 3 33 33 H 1.09002 * 109.47485 * 179.97438 * 1 2 3 34 34 H 0.97004 * 120.00363 * 265.27344 * 4 2 1 35 35 H 0.96998 * 119.99989 * 179.97438 * 8 7 5 36 36 H 1.09000 * 109.45855 * 298.70289 * 15 13 2 37 37 H 1.08993 * 109.45706 * 58.67617 * 15 13 2 38 38 H 1.08999 * 109.49820 * 181.31466 * 16 15 13 39 39 H 1.09000 * 109.49686 * 301.37986 * 16 15 13 40 40 H 1.09004 * 109.58375 * 65.15254 * 17 16 15 41 41 H 1.09000 * 109.58778 * 185.57510 * 17 16 15 42 42 H 1.07998 * 120.53997 * 359.96910 * 22 21 19 43 43 H 1.09003 * 115.55231 * 154.43158 * 25 24 23 44 44 H 1.08999 * 117.49935 * 0.02562 * 26 25 24 45 45 H 1.09006 * 117.50075 * 145.02048 * 26 25 24 46 46 H 1.08998 * 117.49879 * 214.97994 * 27 25 24 47 47 H 1.09000 * 117.49800 * 359.97075 * 27 25 24 48 48 H 1.07994 * 120.54199 * 180.02562 * 29 28 24 49 49 H 1.09000 * 109.58471 * 186.60024 * 30 18 17 50 50 H 1.08995 * 109.58455 * 66.17628 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1490 -0.0075 -2.3758 6 1 1.8925 1.0405 -2.4242 7 6 2.6112 -0.6620 -3.5094 8 7 2.7373 -0.0052 -4.6431 9 14 3.0554 -2.4744 -3.4255 10 1 1.8579 -3.2929 -3.7443 11 1 4.1303 -2.7666 -4.4076 12 1 3.5310 -2.8049 -2.0581 13 6 2.0400 -0.7213 1.2491 14 1 1.6778 -1.7493 1.2490 15 6 1.5302 -0.0003 2.4992 16 6 2.0127 -0.7399 3.7491 17 6 3.5443 -0.7371 3.7800 18 7 4.0438 -1.2972 2.5170 19 6 4.9187 -2.3224 2.5189 20 8 5.2434 -2.8463 1.4712 21 6 5.4836 -2.8098 3.7951 22 6 5.8561 -1.9155 4.8052 23 7 6.3515 -2.3951 5.9325 24 6 6.5068 -3.6928 6.1077 25 6 7.0830 -4.1897 7.4085 26 6 7.2658 -3.1706 8.5351 27 6 8.4865 -3.7128 7.7874 28 7 6.1743 -4.5697 5.1806 29 6 5.6666 -4.1781 4.0251 30 6 3.5719 -0.7181 1.2517 31 1 -0.3632 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0277 -0.0005 34 1 2.2452 -1.6328 -1.1537 35 1 3.0606 -0.4625 -5.4351 36 1 1.9126 1.0203 2.5110 37 1 0.4406 0.0202 2.4875 38 1 1.6299 -0.2394 4.6385 39 1 1.6507 -1.7678 3.7260 40 1 3.9055 0.2850 3.8947 41 1 3.8941 -1.3461 4.6136 42 1 5.7365 -0.8511 4.6673 43 1 6.8036 -5.2053 7.6890 44 1 6.9690 -2.1410 8.3355 45 1 7.1072 -3.5159 9.5567 46 1 9.1305 -4.4146 8.3174 47 1 8.9934 -3.0401 7.0955 48 1 5.3963 -4.9022 3.2708 49 1 3.9400 -1.3148 0.4171 50 1 3.9353 0.3054 1.1603 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568412249.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:53 Heat of formation + Delta-G solvation = 36.152995 kcal Electronic energy + Delta-G solvation = -30357.202804 eV Core-core repulsion = 26384.953876 eV Total energy + Delta-G solvation = -3972.248928 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.62918 -41.13718 -39.22362 -37.96847 -37.18237 -35.18641 -34.65264 -33.47956 -33.06236 -31.73378 -30.08551 -27.47510 -26.49351 -25.83044 -25.34292 -24.21480 -23.23505 -22.79873 -22.15700 -21.37980 -20.58589 -19.62338 -19.19704 -18.30938 -17.99200 -17.34299 -16.77800 -16.50279 -16.27103 -15.94407 -15.74577 -15.56247 -15.30715 -15.10412 -14.96117 -14.77110 -14.48409 -14.32911 -14.23251 -13.99519 -13.58946 -13.36972 -13.23027 -12.89705 -12.74491 -12.60249 -12.42961 -12.36404 -12.22215 -12.14900 -11.97679 -11.88594 -11.81453 -11.68851 -11.45381 -11.41189 -11.29619 -11.07492 -10.96560 -10.53021 -10.40543 -9.75423 -9.29580 -8.03332 -5.33475 -0.73114 -0.19375 1.32424 1.37397 1.42502 1.42668 1.74106 2.34641 2.45268 2.58510 2.80427 3.09750 3.20649 3.29520 3.30216 3.51521 3.72170 3.75610 3.83938 3.89566 3.91087 4.04417 4.06547 4.08063 4.20121 4.31278 4.37814 4.54063 4.55830 4.60766 4.70532 4.79839 4.80725 4.85885 4.88931 4.91250 4.99716 5.01736 5.06396 5.13554 5.16985 5.25909 5.32341 5.33284 5.40116 5.50422 5.61683 5.64439 5.79427 6.20698 6.22407 6.79902 6.89082 7.08434 7.87060 8.02740 9.18402 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016557 B = 0.002649 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.676805 B =10567.017566 C =11744.290294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.176 3.824 3 H 0.053 0.947 4 N -0.754 5.754 5 C -0.213 4.213 6 H 0.065 0.935 7 C -0.060 4.060 8 N -0.982 5.982 9 Si 0.940 3.060 10 H -0.280 1.280 11 H -0.300 1.300 12 H -0.265 1.265 13 C -0.094 4.094 14 H 0.058 0.942 15 C -0.109 4.109 16 C -0.127 4.127 17 C 0.091 3.909 18 N -0.595 5.595 19 C 0.563 3.437 20 O -0.577 6.577 21 C -0.247 4.247 22 C 0.198 3.802 23 N -0.518 5.518 24 C 0.358 3.642 25 C -0.128 4.128 26 C -0.137 4.137 27 C -0.148 4.148 28 N -0.530 5.530 29 C 0.200 3.800 30 C 0.124 3.876 31 H 0.083 0.917 32 H 0.031 0.969 33 H 0.043 0.957 34 H 0.359 0.641 35 H 0.255 0.745 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.110 0.890 39 H 0.056 0.944 40 H 0.104 0.896 41 H 0.093 0.907 42 H 0.204 0.796 43 H 0.139 0.861 44 H 0.105 0.895 45 H 0.124 0.876 46 H 0.124 0.876 47 H 0.086 0.914 48 H 0.178 0.822 49 H 0.056 0.944 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.508 -3.586 34.115 34.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.068 3.932 3 H 0.071 0.929 4 N -0.397 5.397 5 C -0.344 4.344 6 H 0.083 0.917 7 C -0.252 4.252 8 N -0.634 5.634 9 Si 0.770 3.230 10 H -0.206 1.206 11 H -0.227 1.227 12 H -0.191 1.191 13 C -0.114 4.114 14 H 0.076 0.924 15 C -0.147 4.147 16 C -0.165 4.165 17 C -0.030 4.030 18 N -0.326 5.326 19 C 0.351 3.649 20 O -0.457 6.457 21 C -0.255 4.255 22 C 0.031 3.969 23 N -0.232 5.232 24 C 0.093 3.907 25 C -0.148 4.148 26 C -0.174 4.174 27 C -0.187 4.187 28 N -0.243 5.243 29 C 0.034 3.966 30 C 0.002 3.998 31 H 0.102 0.898 32 H 0.050 0.950 33 H 0.062 0.938 34 H 0.192 0.808 35 H 0.064 0.936 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.129 0.871 39 H 0.075 0.925 40 H 0.122 0.878 41 H 0.111 0.889 42 H 0.221 0.779 43 H 0.157 0.843 44 H 0.123 0.877 45 H 0.142 0.858 46 H 0.142 0.858 47 H 0.104 0.896 48 H 0.195 0.805 49 H 0.075 0.925 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.039 -4.004 34.304 34.902 hybrid contribution -0.070 -1.032 -2.376 2.592 sum 4.969 -5.036 31.927 32.702 Atomic orbital electron populations 1.22315 0.97010 1.01039 1.01201 1.20463 0.93147 0.95309 0.84231 0.92905 1.42937 1.79933 1.09370 1.07428 1.19033 1.33923 0.94525 0.86965 0.91696 1.25297 1.03026 1.01243 0.95603 1.69846 1.55305 1.37175 1.01027 0.85623 0.77553 0.82487 0.77373 1.20594 1.22667 1.19088 1.21666 0.93660 1.00058 0.96040 0.92356 1.21621 1.01989 0.99490 0.91587 1.21909 0.93900 1.01339 0.99351 1.22433 0.95860 1.00738 0.83962 1.48139 1.42735 1.32869 1.08896 1.18219 0.79175 0.79683 0.87858 1.90845 1.62108 1.58269 1.34500 1.21535 1.08965 0.97630 0.97363 1.23980 0.85937 1.01621 0.85370 1.68307 1.15927 1.15817 1.23129 1.22969 0.88374 0.85038 0.94290 1.20889 1.02493 1.01353 0.90024 1.23139 0.99858 0.98633 0.95811 1.23098 0.89396 1.03284 1.02888 1.68324 1.13944 1.39923 1.02122 1.23511 0.86655 0.93502 0.92973 1.21536 0.94837 0.98544 0.84869 0.89801 0.95005 0.93781 0.80841 0.93574 0.90078 0.89742 0.87129 0.92527 0.87781 0.88885 0.77911 0.84303 0.87708 0.85769 0.85756 0.89581 0.80517 0.92531 0.90327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.87 9.14 71.98 0.66 -4.21 16 2 C 0.18 6.15 2.47 44.99 0.11 6.26 16 3 H 0.05 1.90 8.08 -2.39 -0.02 1.88 16 4 N -0.75 -35.10 4.32 -322.94 -1.40 -36.50 16 5 C -0.21 -12.13 10.41 84.03 0.87 -11.26 16 6 H 0.07 3.97 8.06 -2.91 -0.02 3.95 16 7 C -0.06 -3.65 5.50 84.86 0.47 -3.19 16 8 N -0.98 -64.25 13.97 21.65 0.30 -63.95 16 9 Si 0.94 48.96 27.73 68.60 1.90 50.86 16 10 H -0.28 -14.13 7.11 99.48 0.71 -13.42 16 11 H -0.30 -15.89 7.11 99.48 0.71 -15.19 16 12 H -0.27 -13.38 6.52 99.48 0.65 -12.73 16 13 C -0.09 -2.57 1.97 -10.72 -0.02 -2.59 16 14 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 15 C -0.11 -1.88 4.85 30.62 0.15 -1.73 16 16 C -0.13 -1.63 6.08 30.67 0.19 -1.44 16 17 C 0.09 1.24 4.94 86.36 0.43 1.67 16 18 N -0.60 -14.24 2.97 -822.33 -2.44 -16.68 16 19 C 0.56 16.11 7.37 86.78 0.64 16.75 16 20 O -0.58 -22.73 16.37 -3.88 -0.06 -22.80 16 21 C -0.25 -5.49 5.15 -19.91 -0.10 -5.59 16 22 C 0.20 3.34 8.69 85.06 0.74 4.08 16 23 N -0.52 -9.23 9.32 -186.80 -1.74 -10.97 16 24 C 0.36 6.89 7.31 138.71 1.01 7.90 16 25 C -0.13 -1.71 6.23 -11.54 -0.07 -1.78 16 26 C -0.14 -1.24 10.01 30.62 0.31 -0.93 16 27 C -0.15 -1.51 10.24 30.62 0.31 -1.20 16 28 N -0.53 -11.83 10.31 -186.80 -1.93 -13.76 16 29 C 0.20 4.59 10.97 85.06 0.93 5.53 16 30 C 0.12 3.77 5.48 86.36 0.47 4.24 16 31 H 0.08 1.92 6.40 -2.39 -0.02 1.91 16 32 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.36 17.07 5.50 -92.71 -0.51 16.56 16 35 H 0.26 16.07 8.31 -92.71 -0.77 15.30 16 36 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.08 1.32 6.36 -2.39 -0.02 1.30 16 38 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.10 0.92 8.13 -2.38 -0.02 0.90 16 41 H 0.09 1.07 4.73 -2.39 -0.01 1.06 16 42 H 0.20 2.19 6.65 -2.91 -0.02 2.17 16 43 H 0.14 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.10 1.12 7.53 -2.39 -0.02 1.11 16 45 H 0.12 0.58 8.14 -2.38 -0.02 0.56 16 46 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 48 H 0.18 3.93 8.06 -2.91 -0.02 3.90 16 49 H 0.06 2.28 6.52 -2.39 -0.02 2.27 16 50 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -79.18 396.43 2.12 -77.06 By element: Atomic # 1 Polarization: 23.83 SS G_CDS: 0.39 Total: 24.22 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: 7.10 Total: 12.51 kcal Atomic # 7 Polarization: -134.65 SS G_CDS: -7.20 Total: -141.86 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: -0.06 Total: -22.80 kcal Atomic # 14 Polarization: 48.96 SS G_CDS: 1.90 Total: 50.86 kcal Total: -79.18 2.12 -77.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568412249.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.211 kcal (2) G-P(sol) polarization free energy of solvation -79.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds