Wall clock time and date at job start Wed Apr 1 2020 03:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46973 * 2 1 4 4 N 1.46498 * 109.46554 * 119.99638 * 2 1 3 5 5 C 1.36940 * 120.00162 * 274.99742 * 4 2 1 6 6 H 1.08005 * 119.99677 * 0.02562 * 5 4 2 7 7 C 1.38815 * 120.00269 * 180.02562 * 5 4 2 8 8 N 1.31622 * 119.99783 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 119.99724 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.47126 * 90.00447 * 9 7 5 11 11 H 1.48507 * 109.46717 * 209.99974 * 9 7 5 12 12 H 1.48498 * 109.47491 * 330.00163 * 9 7 5 13 13 C 1.52998 * 109.47028 * 239.99432 * 2 1 3 14 14 H 1.09000 * 109.52617 * 299.91815 * 13 2 1 15 15 C 1.53039 * 109.49868 * 60.00439 * 13 2 1 16 16 C 1.53042 * 109.53681 * 181.31149 * 15 13 2 17 17 C 1.53187 * 109.31330 * 298.63565 * 16 15 13 18 18 N 1.46928 * 108.89579 * 54.56389 * 17 16 15 19 19 C 1.34775 * 120.63241 * 126.46079 * 18 17 16 20 20 O 1.21555 * 120.00225 * 176.19586 * 19 18 17 21 21 C 1.47834 * 119.99788 * 356.20790 * 19 18 17 22 22 C 1.39952 * 120.94593 * 49.69665 * 21 19 18 23 23 N 1.32140 * 118.92581 * 179.70155 * 22 21 19 24 24 C 1.31870 * 120.96673 * 0.60646 * 23 22 21 25 25 C 1.50698 * 118.95523 * 179.68319 * 24 23 22 26 26 C 1.53004 * 117.49665 * 8.60130 * 25 24 23 27 27 C 1.52997 * 60.00177 * 252.51196 * 26 25 24 28 28 N 1.31869 * 122.09741 * 359.66667 * 24 23 22 29 29 C 1.32149 * 120.96529 * 0.02562 * 28 24 23 30 30 C 1.46957 * 118.71423 * 306.64399 * 18 17 16 31 31 H 1.08998 * 109.47171 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47362 * 300.00684 * 1 2 3 33 33 H 1.09006 * 109.46625 * 60.00529 * 1 2 3 34 34 H 0.97004 * 120.00410 * 95.00712 * 4 2 1 35 35 H 0.97002 * 119.99510 * 179.97438 * 8 7 5 36 36 H 1.08997 * 109.45969 * 61.29295 * 15 13 2 37 37 H 1.08992 * 109.44742 * 301.32813 * 15 13 2 38 38 H 1.08997 * 109.49433 * 178.68017 * 16 15 13 39 39 H 1.08998 * 109.49320 * 58.58889 * 16 15 13 40 40 H 1.09002 * 109.58583 * 174.42407 * 17 16 15 41 41 H 1.09001 * 109.58729 * 294.70406 * 17 16 15 42 42 H 1.07997 * 120.53058 * 359.97438 * 22 21 19 43 43 H 1.08997 * 115.55896 * 154.31052 * 25 24 23 44 44 H 1.09002 * 117.50013 * 0.02562 * 26 25 24 45 45 H 1.09002 * 117.49722 * 145.02259 * 26 25 24 46 46 H 1.09005 * 117.49615 * 252.51263 * 27 26 25 47 47 H 1.08995 * 117.50023 * 107.48994 * 27 26 25 48 48 H 1.07996 * 120.53926 * 180.02562 * 29 28 24 49 49 H 1.09003 * 109.46613 * 293.56742 * 30 18 17 50 50 H 1.09000 * 109.71436 * 173.28846 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6905 1.1962 5 6 2.1490 -0.0074 2.3758 6 1 1.8918 1.0405 2.4243 7 6 2.6121 -0.6615 3.5092 8 7 2.7373 -0.0049 4.6430 9 14 3.0562 -2.4740 3.4254 10 1 4.4888 -2.6163 3.0612 11 1 2.8170 -3.1039 4.7489 12 1 2.2159 -3.1428 2.3999 13 6 2.0400 -0.7214 -1.2492 14 1 1.6784 -1.7496 -1.2492 15 6 1.5303 -0.0005 -2.4992 16 6 2.0128 -0.7402 -3.7491 17 6 3.5444 -0.7372 -3.7799 18 7 4.0468 -1.2953 -2.5171 19 6 4.9233 -2.3191 -2.5193 20 8 5.3846 -2.7266 -1.4711 21 6 5.3240 -2.9463 -3.7966 22 6 5.7505 -2.1674 -4.8782 23 7 6.1051 -2.7701 -5.9994 24 6 6.0499 -4.0830 -6.1108 25 6 6.4583 -4.7225 -7.4128 26 6 7.1063 -3.8243 -8.4684 27 6 5.6764 -4.3305 -8.6682 28 7 5.6490 -4.8541 -5.1190 29 6 5.2817 -4.3356 -3.9603 30 6 3.5719 -0.7183 -1.2517 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 2.2490 -1.6317 1.1528 35 1 3.0605 -0.4622 5.4351 36 1 1.9126 1.0202 -2.5110 37 1 0.4406 0.0201 -2.4873 38 1 1.6300 -0.2397 -4.6385 39 1 1.6513 -1.7682 -3.7256 40 1 3.8942 -1.3464 -4.6134 41 1 3.9055 0.2845 -3.8972 42 1 5.7933 -1.0914 -4.7963 43 1 6.8120 -5.7510 -7.3410 44 1 7.2377 -2.7709 -8.2209 45 1 7.8867 -4.2618 -9.0910 46 1 5.5162 -5.1011 -9.4224 47 1 4.8667 -3.6102 -8.5524 48 1 4.9550 -4.9736 -3.1526 49 1 3.9354 0.3053 -1.1602 50 1 3.9400 -1.3127 -0.4155 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568412251.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:02 Heat of formation + Delta-G solvation = 57.347475 kcal Electronic energy + Delta-G solvation = -30397.712662 eV Core-core repulsion = 26426.382796 eV Total energy + Delta-G solvation = -3971.329866 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.78084 -40.11945 -38.06084 -37.36931 -35.75555 -34.25822 -33.21845 -32.26272 -31.90945 -30.22629 -28.66265 -26.58331 -25.47496 -24.94583 -23.83471 -22.96956 -22.78062 -21.97398 -21.16099 -19.92441 -19.55161 -18.40764 -17.71403 -17.40297 -17.19164 -16.28187 -15.76378 -15.24245 -15.06518 -14.92639 -14.64190 -14.49309 -14.33330 -14.11907 -13.97038 -13.55530 -13.09976 -13.03278 -12.92094 -12.69252 -12.45639 -12.29675 -12.04865 -11.85454 -11.62608 -11.47215 -11.29648 -11.23508 -11.10361 -10.98502 -10.94370 -10.82900 -10.71126 -10.41625 -10.16329 -10.08978 -9.86416 -9.69540 -9.59677 -9.53922 -8.92831 -8.70332 -7.25302 -5.74537 -3.10155 0.14058 0.61312 2.40713 2.74300 3.07898 3.28417 3.43659 3.47657 3.48692 3.52904 3.75828 4.03462 4.13984 4.39726 4.50228 4.53032 4.55730 4.60603 4.63510 4.73298 4.79920 4.90291 5.03543 5.14209 5.21181 5.22811 5.31164 5.37606 5.45988 5.50145 5.59271 5.62475 5.62862 5.73814 5.76209 5.82708 5.85826 5.95777 5.98616 6.08778 6.22274 6.28743 6.32652 6.43407 6.48337 6.51738 6.78878 6.98280 7.21842 7.60107 7.94807 8.00792 8.44440 9.22726 9.95844 10.14768 11.43636 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016775 B = 0.002675 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.759871 B =10463.436779 C =11572.370194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.186 3.814 3 H 0.057 0.943 4 N -0.749 5.749 5 C -0.242 4.242 6 H 0.090 0.910 7 C 0.007 3.993 8 N -0.934 5.934 9 Si 0.880 3.120 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.278 1.278 13 C -0.107 4.107 14 H 0.070 0.930 15 C -0.114 4.114 16 C -0.133 4.133 17 C 0.097 3.903 18 N -0.601 5.601 19 C 0.564 3.436 20 O -0.518 6.518 21 C -0.235 4.235 22 C 0.183 3.817 23 N -0.517 5.517 24 C 0.361 3.639 25 C -0.108 4.108 26 C -0.152 4.152 27 C -0.153 4.153 28 N -0.512 5.512 29 C 0.203 3.797 30 C 0.121 3.879 31 H 0.044 0.956 32 H 0.058 0.942 33 H 0.042 0.958 34 H 0.361 0.639 35 H 0.259 0.741 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.176 0.824 43 H 0.131 0.869 44 H 0.111 0.889 45 H 0.102 0.898 46 H 0.104 0.896 47 H 0.097 0.903 48 H 0.178 0.822 49 H 0.074 0.926 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.331 -4.732 -29.725 30.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.076 3.924 3 H 0.075 0.925 4 N -0.392 5.392 5 C -0.372 4.372 6 H 0.108 0.892 7 C -0.189 4.189 8 N -0.582 5.582 9 Si 0.710 3.290 10 H -0.208 1.208 11 H -0.219 1.219 12 H -0.204 1.204 13 C -0.127 4.127 14 H 0.088 0.912 15 C -0.152 4.152 16 C -0.171 4.171 17 C -0.026 4.026 18 N -0.334 5.334 19 C 0.349 3.651 20 O -0.394 6.394 21 C -0.242 4.242 22 C 0.016 3.984 23 N -0.230 5.230 24 C 0.095 3.905 25 C -0.128 4.128 26 C -0.190 4.190 27 C -0.191 4.191 28 N -0.225 5.225 29 C 0.036 3.964 30 C 0.000 4.000 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.194 0.806 35 H 0.069 0.931 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.097 0.903 41 H 0.094 0.906 42 H 0.193 0.807 43 H 0.149 0.851 44 H 0.129 0.871 45 H 0.120 0.880 46 H 0.123 0.877 47 H 0.116 0.884 48 H 0.195 0.805 49 H 0.092 0.908 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 3.878 -5.197 -29.794 30.492 hybrid contribution -0.053 -0.941 1.076 1.431 sum 3.825 -6.138 -28.718 29.615 Atomic orbital electron populations 1.22454 0.98740 1.00846 1.00478 1.20144 0.92059 0.95576 0.84653 0.92487 1.42831 1.79776 1.09398 1.07172 1.19025 1.37001 0.95446 0.85701 0.89217 1.24645 1.01338 0.97372 0.95575 1.69701 1.52623 1.35575 1.00256 0.86619 0.78873 0.86815 0.76644 1.20754 1.21864 1.20428 1.21824 0.94457 1.00628 0.95814 0.91206 1.21623 1.01349 0.99184 0.93089 1.21912 0.94444 1.01655 0.99126 1.22023 0.95398 0.99319 0.85818 1.48132 1.43381 1.33517 1.08333 1.17845 0.79607 0.79887 0.87721 1.90884 1.53815 1.62448 1.32249 1.21798 1.07684 0.97326 0.97407 1.23492 0.87757 1.00862 0.86252 1.68158 1.17157 1.11874 1.25826 1.22349 0.88773 0.85761 0.93586 1.20698 1.07359 1.00076 0.84633 1.23053 0.95731 1.00734 0.99436 1.23001 0.95831 1.03453 0.96827 1.68248 1.13010 1.40592 1.00666 1.23398 0.87714 0.91340 0.93924 1.21788 0.93991 0.99470 0.84709 0.93725 0.92331 0.93938 0.80629 0.93108 0.91446 0.90871 0.90680 0.91650 0.90344 0.90558 0.80688 0.85070 0.87053 0.87998 0.87731 0.88445 0.80486 0.90788 0.87943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.71 9.14 37.16 0.34 -2.37 16 2 C 0.19 3.30 2.47 -67.93 -0.17 3.13 16 3 H 0.06 1.04 8.08 -51.93 -0.42 0.63 16 4 N -0.75 -17.18 4.32 -53.42 -0.23 -17.42 16 5 C -0.24 -6.70 10.41 -15.06 -0.16 -6.86 16 6 H 0.09 2.65 8.06 -52.48 -0.42 2.23 16 7 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 8 N -0.93 -29.46 13.97 55.49 0.78 -28.69 16 9 Si 0.88 22.84 27.73 -169.99 -4.71 18.12 16 10 H -0.28 -7.42 7.11 56.52 0.40 -7.02 16 11 H -0.29 -7.67 7.11 56.52 0.40 -7.27 16 12 H -0.28 -6.85 6.52 56.52 0.37 -6.48 16 13 C -0.11 -1.53 1.98 -90.50 -0.18 -1.71 16 14 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 15 C -0.11 -1.20 4.85 -26.69 -0.13 -1.33 16 16 C -0.13 -1.14 6.08 -26.61 -0.16 -1.30 16 17 C 0.10 0.85 5.40 -3.71 -0.02 0.83 16 18 N -0.60 -7.54 2.98 -173.86 -0.52 -8.06 16 19 C 0.56 8.01 7.29 -12.34 -0.09 7.92 16 20 O -0.52 -9.73 16.49 5.32 0.09 -9.64 16 21 C -0.23 -2.69 5.05 -104.69 -0.53 -3.22 16 22 C 0.18 1.76 8.67 -16.78 -0.15 1.61 16 23 N -0.52 -5.18 9.32 -10.40 -0.10 -5.28 16 24 C 0.36 3.76 7.31 -157.07 -1.15 2.61 16 25 C -0.11 -0.83 6.23 -91.77 -0.57 -1.41 16 26 C -0.15 -0.92 10.00 -26.73 -0.27 -1.19 16 27 C -0.15 -0.91 10.23 -26.73 -0.27 -1.18 16 28 N -0.51 -5.89 10.31 -10.39 -0.11 -6.00 16 29 C 0.20 2.32 11.06 -16.77 -0.19 2.14 16 30 C 0.12 1.85 5.46 -3.69 -0.02 1.83 16 31 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.04 0.56 6.40 -51.93 -0.33 0.23 16 34 H 0.36 8.44 5.48 -40.82 -0.22 8.22 16 35 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.74 6.36 -51.93 -0.33 0.41 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.08 0.60 4.50 -51.93 -0.23 0.37 16 41 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.18 1.25 7.05 -52.49 -0.37 0.88 16 43 H 0.13 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.11 0.77 7.53 -51.93 -0.39 0.38 16 45 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.18 1.84 8.06 -52.49 -0.42 1.42 16 49 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 50 H 0.10 1.96 6.55 -51.93 -0.34 1.62 16 LS Contribution 397.08 15.07 5.98 5.98 Total: -1.00 -34.26 397.08 -10.35 -44.61 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -7.73 Total: 6.77 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: -3.80 Total: -0.41 kcal Atomic # 7 Polarization: -65.26 SS G_CDS: -0.18 Total: -65.44 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.09 Total: -9.64 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -4.71 Total: 18.12 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.26 -10.35 -44.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568412251.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.960 kcal (2) G-P(sol) polarization free energy of solvation -34.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds