Wall clock time and date at job start Wed Apr 1 2020 03:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46973 * 2 1 4 4 N 1.46498 * 109.46554 * 119.99638 * 2 1 3 5 5 C 1.36940 * 120.00162 * 274.99742 * 4 2 1 6 6 H 1.08005 * 119.99677 * 0.02562 * 5 4 2 7 7 C 1.38815 * 120.00269 * 180.02562 * 5 4 2 8 8 N 1.31622 * 119.99783 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 119.99724 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.47126 * 90.00447 * 9 7 5 11 11 H 1.48507 * 109.46717 * 209.99974 * 9 7 5 12 12 H 1.48498 * 109.47491 * 330.00163 * 9 7 5 13 13 C 1.52998 * 109.47028 * 239.99432 * 2 1 3 14 14 H 1.09000 * 109.52617 * 299.91815 * 13 2 1 15 15 C 1.53039 * 109.49868 * 60.00439 * 13 2 1 16 16 C 1.53042 * 109.53681 * 181.31149 * 15 13 2 17 17 C 1.53187 * 109.31330 * 298.63565 * 16 15 13 18 18 N 1.46928 * 108.89579 * 54.56389 * 17 16 15 19 19 C 1.34775 * 120.63241 * 126.46079 * 18 17 16 20 20 O 1.21555 * 120.00225 * 176.19586 * 19 18 17 21 21 C 1.47834 * 119.99788 * 356.20790 * 19 18 17 22 22 C 1.39952 * 120.94593 * 49.69665 * 21 19 18 23 23 N 1.32140 * 118.92581 * 179.70155 * 22 21 19 24 24 C 1.31870 * 120.96673 * 0.60646 * 23 22 21 25 25 C 1.50698 * 118.95523 * 179.68319 * 24 23 22 26 26 C 1.53004 * 117.49665 * 8.60130 * 25 24 23 27 27 C 1.52997 * 60.00177 * 252.51196 * 26 25 24 28 28 N 1.31869 * 122.09741 * 359.66667 * 24 23 22 29 29 C 1.32149 * 120.96529 * 0.02562 * 28 24 23 30 30 C 1.46957 * 118.71423 * 306.64399 * 18 17 16 31 31 H 1.08998 * 109.47171 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47362 * 300.00684 * 1 2 3 33 33 H 1.09006 * 109.46625 * 60.00529 * 1 2 3 34 34 H 0.97004 * 120.00410 * 95.00712 * 4 2 1 35 35 H 0.97002 * 119.99510 * 179.97438 * 8 7 5 36 36 H 1.08997 * 109.45969 * 61.29295 * 15 13 2 37 37 H 1.08992 * 109.44742 * 301.32813 * 15 13 2 38 38 H 1.08997 * 109.49433 * 178.68017 * 16 15 13 39 39 H 1.08998 * 109.49320 * 58.58889 * 16 15 13 40 40 H 1.09002 * 109.58583 * 174.42407 * 17 16 15 41 41 H 1.09001 * 109.58729 * 294.70406 * 17 16 15 42 42 H 1.07997 * 120.53058 * 359.97438 * 22 21 19 43 43 H 1.08997 * 115.55896 * 154.31052 * 25 24 23 44 44 H 1.09002 * 117.50013 * 0.02562 * 26 25 24 45 45 H 1.09002 * 117.49722 * 145.02259 * 26 25 24 46 46 H 1.09005 * 117.49615 * 252.51263 * 27 26 25 47 47 H 1.08995 * 117.50023 * 107.48994 * 27 26 25 48 48 H 1.07996 * 120.53926 * 180.02562 * 29 28 24 49 49 H 1.09003 * 109.46613 * 293.56742 * 30 18 17 50 50 H 1.09000 * 109.71436 * 173.28846 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6905 1.1962 5 6 2.1490 -0.0074 2.3758 6 1 1.8918 1.0405 2.4243 7 6 2.6121 -0.6615 3.5092 8 7 2.7373 -0.0049 4.6430 9 14 3.0562 -2.4740 3.4254 10 1 4.4888 -2.6163 3.0612 11 1 2.8170 -3.1039 4.7489 12 1 2.2159 -3.1428 2.3999 13 6 2.0400 -0.7214 -1.2492 14 1 1.6784 -1.7496 -1.2492 15 6 1.5303 -0.0005 -2.4992 16 6 2.0128 -0.7402 -3.7491 17 6 3.5444 -0.7372 -3.7799 18 7 4.0468 -1.2953 -2.5171 19 6 4.9233 -2.3191 -2.5193 20 8 5.3846 -2.7266 -1.4711 21 6 5.3240 -2.9463 -3.7966 22 6 5.7505 -2.1674 -4.8782 23 7 6.1051 -2.7701 -5.9994 24 6 6.0499 -4.0830 -6.1108 25 6 6.4583 -4.7225 -7.4128 26 6 7.1063 -3.8243 -8.4684 27 6 5.6764 -4.3305 -8.6682 28 7 5.6490 -4.8541 -5.1190 29 6 5.2817 -4.3356 -3.9603 30 6 3.5719 -0.7183 -1.2517 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 2.2490 -1.6317 1.1528 35 1 3.0605 -0.4622 5.4351 36 1 1.9126 1.0202 -2.5110 37 1 0.4406 0.0201 -2.4873 38 1 1.6300 -0.2397 -4.6385 39 1 1.6513 -1.7682 -3.7256 40 1 3.8942 -1.3464 -4.6134 41 1 3.9055 0.2845 -3.8972 42 1 5.7933 -1.0914 -4.7963 43 1 6.8120 -5.7510 -7.3410 44 1 7.2377 -2.7709 -8.2209 45 1 7.8867 -4.2618 -9.0910 46 1 5.5162 -5.1011 -9.4224 47 1 4.8667 -3.6102 -8.5524 48 1 4.9550 -4.9736 -3.1526 49 1 3.9354 0.3053 -1.1602 50 1 3.9400 -1.3127 -0.4155 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568412251.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:00 Heat of formation + Delta-G solvation = 35.566659 kcal Electronic energy + Delta-G solvation = -30398.657149 eV Core-core repulsion = 26426.382796 eV Total energy + Delta-G solvation = -3972.274353 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.61970 -41.13603 -39.23331 -37.96739 -37.17201 -35.16275 -34.67119 -33.48016 -33.06969 -31.74085 -30.08958 -27.46826 -26.49693 -25.83946 -25.34355 -24.22375 -23.21951 -22.79827 -22.16873 -21.38771 -20.56008 -19.62459 -19.18208 -18.34492 -18.05287 -17.34504 -16.77765 -16.53395 -16.18056 -15.88702 -15.85311 -15.52891 -15.36685 -15.14000 -14.94108 -14.76143 -14.47403 -14.33512 -14.22211 -13.97286 -13.61599 -13.35869 -13.23509 -12.91826 -12.76515 -12.58197 -12.42016 -12.34257 -12.21796 -12.19343 -11.98111 -11.87396 -11.81212 -11.69492 -11.46362 -11.41215 -11.30742 -11.07086 -10.98002 -10.50980 -10.39922 -9.76715 -9.30066 -8.03530 -5.33797 -0.68617 -0.19434 1.31908 1.35328 1.38048 1.40049 1.74820 2.33708 2.44938 2.59386 2.78908 3.12829 3.18836 3.29395 3.29668 3.50764 3.72976 3.77402 3.84519 3.88768 3.91339 4.03517 4.05800 4.09438 4.19691 4.31610 4.37608 4.53957 4.55742 4.60470 4.70500 4.80056 4.81165 4.85194 4.88082 4.91514 4.99222 5.01255 5.06913 5.12778 5.17889 5.25263 5.32559 5.32661 5.38945 5.49696 5.61116 5.64734 5.79199 6.19978 6.22119 6.80481 6.88014 7.08123 7.86557 8.02192 9.18212 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016775 B = 0.002675 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.759871 B =10463.436779 C =11572.370194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.176 3.824 3 H 0.053 0.947 4 N -0.754 5.754 5 C -0.214 4.214 6 H 0.065 0.935 7 C -0.060 4.060 8 N -0.982 5.982 9 Si 0.941 3.059 10 H -0.291 1.291 11 H -0.295 1.295 12 H -0.259 1.259 13 C -0.094 4.094 14 H 0.060 0.940 15 C -0.109 4.109 16 C -0.127 4.127 17 C 0.092 3.908 18 N -0.594 5.594 19 C 0.564 3.436 20 O -0.576 6.576 21 C -0.243 4.243 22 C 0.196 3.804 23 N -0.517 5.517 24 C 0.356 3.644 25 C -0.130 4.130 26 C -0.142 4.142 27 C -0.140 4.140 28 N -0.528 5.528 29 C 0.197 3.803 30 C 0.125 3.875 31 H 0.043 0.957 32 H 0.031 0.969 33 H 0.083 0.917 34 H 0.359 0.641 35 H 0.255 0.745 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.109 0.891 39 H 0.057 0.943 40 H 0.093 0.907 41 H 0.102 0.898 42 H 0.204 0.796 43 H 0.136 0.864 44 H 0.103 0.897 45 H 0.121 0.879 46 H 0.124 0.876 47 H 0.092 0.908 48 H 0.178 0.822 49 H 0.076 0.924 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.709 -4.678 -34.379 34.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.069 3.931 3 H 0.071 0.929 4 N -0.397 5.397 5 C -0.345 4.345 6 H 0.083 0.917 7 C -0.252 4.252 8 N -0.633 5.633 9 Si 0.770 3.230 10 H -0.218 1.218 11 H -0.222 1.222 12 H -0.184 1.184 13 C -0.114 4.114 14 H 0.078 0.922 15 C -0.147 4.147 16 C -0.165 4.165 17 C -0.030 4.030 18 N -0.325 5.325 19 C 0.351 3.649 20 O -0.456 6.456 21 C -0.251 4.251 22 C 0.029 3.971 23 N -0.230 5.230 24 C 0.092 3.908 25 C -0.150 4.150 26 C -0.180 4.180 27 C -0.179 4.179 28 N -0.241 5.241 29 C 0.030 3.970 30 C 0.002 3.998 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.102 0.898 34 H 0.192 0.808 35 H 0.064 0.936 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.128 0.872 39 H 0.076 0.924 40 H 0.111 0.889 41 H 0.120 0.880 42 H 0.220 0.780 43 H 0.154 0.846 44 H 0.121 0.879 45 H 0.139 0.861 46 H 0.142 0.858 47 H 0.111 0.889 48 H 0.195 0.805 49 H 0.094 0.906 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.207 -5.131 -34.556 35.082 hybrid contribution 0.130 -0.862 2.386 2.540 sum 3.337 -5.993 -32.170 32.894 Atomic orbital electron populations 1.22316 0.97015 1.01025 1.01195 1.20460 0.93146 0.95309 0.84217 0.92938 1.42930 1.79973 1.09342 1.07416 1.19030 1.33877 0.94471 0.87117 0.91723 1.25305 1.03014 1.01269 0.95597 1.69847 1.55250 1.37201 1.01036 0.85619 0.78126 0.82527 0.76700 1.21761 1.22186 1.18407 1.21666 0.93543 1.00156 0.96021 0.92165 1.21620 1.01997 0.99473 0.91614 1.21901 0.93899 1.01352 0.99313 1.22382 0.95829 1.00729 0.84018 1.48164 1.42565 1.32840 1.08900 1.18218 0.79110 0.79690 0.87872 1.90852 1.56086 1.64233 1.34464 1.21523 1.09504 0.97339 0.96742 1.23891 0.86061 1.01881 0.85276 1.68294 1.17343 1.11695 1.25707 1.22937 0.87641 0.86077 0.94168 1.20877 1.09318 1.00635 0.84164 1.23122 0.96473 1.00013 0.98389 1.23093 0.95562 1.03522 0.95674 1.68315 1.13942 1.40990 1.00899 1.23478 0.87677 0.91626 0.94190 1.21528 0.94707 0.98686 0.84852 0.93789 0.95017 0.89806 0.80846 0.93561 0.90178 0.89715 0.87222 0.92436 0.88880 0.87970 0.77971 0.84593 0.87851 0.86091 0.85758 0.88927 0.80538 0.90562 0.92460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.86 9.14 71.98 0.66 -4.20 16 2 C 0.18 6.14 2.47 44.99 0.11 6.25 16 3 H 0.05 1.89 8.08 -2.39 -0.02 1.87 16 4 N -0.75 -34.98 4.32 -322.93 -1.40 -36.37 16 5 C -0.21 -12.15 10.41 84.03 0.87 -11.28 16 6 H 0.06 3.96 8.06 -2.91 -0.02 3.93 16 7 C -0.06 -3.66 5.50 84.86 0.47 -3.19 16 8 N -0.98 -64.23 13.97 21.65 0.30 -63.93 16 9 Si 0.94 48.85 27.73 68.60 1.90 50.75 16 10 H -0.29 -15.41 7.11 99.48 0.71 -14.71 16 11 H -0.30 -15.35 7.11 99.48 0.71 -14.64 16 12 H -0.26 -12.42 6.52 99.48 0.65 -11.77 16 13 C -0.09 -2.53 1.98 -10.72 -0.02 -2.55 16 14 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 15 C -0.11 -1.87 4.85 30.62 0.15 -1.72 16 16 C -0.13 -1.61 6.08 30.67 0.19 -1.42 16 17 C 0.09 1.25 5.40 86.36 0.47 1.72 16 18 N -0.59 -14.13 2.98 -822.24 -2.45 -16.58 16 19 C 0.56 15.99 7.29 86.78 0.63 16.63 16 20 O -0.58 -22.60 16.49 -3.89 -0.06 -22.66 16 21 C -0.24 -5.36 5.05 -19.91 -0.10 -5.47 16 22 C 0.20 3.30 8.67 85.06 0.74 4.04 16 23 N -0.52 -9.20 9.32 -186.80 -1.74 -10.94 16 24 C 0.36 6.85 7.31 138.70 1.01 7.86 16 25 C -0.13 -1.75 6.23 -11.54 -0.07 -1.82 16 26 C -0.14 -1.34 10.00 30.59 0.31 -1.03 16 27 C -0.14 -1.27 10.23 30.59 0.31 -0.95 16 28 N -0.53 -11.75 10.31 -186.80 -1.93 -13.68 16 29 C 0.20 4.47 11.06 85.06 0.94 5.41 16 30 C 0.12 3.76 5.46 86.36 0.47 4.23 16 31 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.08 1.92 6.40 -2.38 -0.02 1.90 16 34 H 0.36 16.93 5.48 -92.71 -0.51 16.43 16 35 H 0.26 16.07 8.31 -92.71 -0.77 15.30 16 36 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.08 1.31 6.36 -2.39 -0.02 1.29 16 38 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.09 1.06 4.50 -2.39 -0.01 1.04 16 41 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.20 2.16 7.05 -2.91 -0.02 2.14 16 43 H 0.14 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.10 1.17 7.53 -2.39 -0.02 1.15 16 45 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 46 H 0.12 0.63 8.14 -2.38 -0.02 0.61 16 47 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 48 H 0.18 3.83 8.06 -2.91 -0.02 3.81 16 49 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 50 H 0.06 2.28 6.55 -2.39 -0.02 2.26 16 Total: -1.00 -79.05 397.08 2.15 -76.90 By element: Atomic # 1 Polarization: 23.62 SS G_CDS: 0.39 Total: 24.00 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: 7.13 Total: 12.50 kcal Atomic # 7 Polarization: -134.28 SS G_CDS: -7.21 Total: -141.49 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: -0.06 Total: -22.66 kcal Atomic # 14 Polarization: 48.85 SS G_CDS: 1.90 Total: 50.75 kcal Total: -79.05 2.15 -76.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568412251.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.468 kcal (2) G-P(sol) polarization free energy of solvation -79.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds