Wall clock time and date at job start Wed Apr 1 2020 03:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47177 * 23.95917 * 3 2 1 5 5 C 1.34777 * 120.00285 * 89.99953 * 4 3 2 6 6 O 1.21281 * 120.00170 * 180.02562 * 5 4 3 7 7 C 1.50700 * 119.99487 * 0.02562 * 5 4 3 8 8 C 1.53001 * 109.47003 * 179.97438 * 7 5 4 9 9 H 1.08999 * 109.46778 * 55.00076 * 8 7 5 10 10 C 1.53000 * 109.47088 * 295.00306 * 8 7 5 11 11 N 1.46497 * 109.47307 * 175.00030 * 8 7 5 12 12 C 1.34942 * 126.03916 * 84.99683 * 11 8 7 13 13 C 1.35323 * 107.74984 * 179.97438 * 12 11 8 14 14 C 1.39866 * 107.91803 * 0.02562 * 13 12 11 15 15 N 1.30845 * 108.20136 * 359.74108 * 14 13 12 16 16 C 1.46503 * 120.00229 * 270.00451 * 4 3 2 17 17 C 1.53043 * 109.45981 * 60.02462 * 16 4 3 18 18 C 1.53196 * 109.30974 * 178.60574 * 17 16 4 19 19 N 1.46927 * 108.76803 * 54.65423 * 18 17 16 20 20 C 1.36935 * 120.63214 * 126.35817 * 19 18 17 21 21 H 1.08005 * 120.00291 * 331.87082 * 20 19 18 22 22 C 1.38812 * 120.00093 * 151.86222 * 20 19 18 23 23 N 1.31615 * 120.00148 * 343.06922 * 22 20 19 24 24 Si 1.86801 * 120.00001 * 163.06507 * 22 20 19 25 25 H 1.48500 * 109.47182 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.47029 * 120.00081 * 24 22 20 27 27 H 1.48497 * 109.47383 * 240.00082 * 24 22 20 28 28 C 1.46927 * 118.73835 * 306.38883 * 19 18 17 29 29 C 1.53045 * 109.45739 * 299.97399 * 16 4 3 30 30 H 4.40647 * 5.51374 * 180.02562 * 4 1 2 31 31 H 1.09000 * 109.46751 * 263.96589 * 3 2 1 32 32 H 1.08994 * 109.46971 * 143.96297 * 3 2 1 33 33 H 1.08995 * 109.47325 * 59.99753 * 7 5 4 34 34 H 1.08999 * 109.47582 * 299.99681 * 7 5 4 35 35 H 1.09008 * 109.47005 * 299.99679 * 10 8 7 36 36 H 1.08992 * 109.47473 * 59.99483 * 10 8 7 37 37 H 1.08998 * 109.46890 * 180.02562 * 10 8 7 38 38 H 1.08008 * 126.12822 * 359.96483 * 12 11 8 39 39 H 1.07996 * 126.03888 * 180.02562 * 13 12 11 40 40 H 1.08001 * 125.90023 * 180.02562 * 14 13 12 41 41 H 1.08991 * 109.46366 * 179.97438 * 16 4 3 42 42 H 1.09002 * 109.49770 * 298.56698 * 17 16 4 43 43 H 1.08997 * 109.49938 * 58.66941 * 17 16 4 44 44 H 1.08997 * 109.59965 * 294.86714 * 18 17 16 45 45 H 1.09001 * 109.69874 * 174.50870 * 18 17 16 46 46 H 0.96998 * 120.00352 * 180.02562 * 23 22 20 47 47 H 1.09002 * 109.58260 * 293.81514 * 28 19 18 48 48 H 1.08993 * 109.70005 * 173.46656 * 28 19 18 49 49 H 1.09006 * 109.49685 * 301.33524 * 29 16 4 50 50 H 1.08997 * 109.49706 * 61.43094 * 29 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.2613 -0.5609 5 6 3.3596 -1.3679 -1.8855 6 8 3.7639 -2.4128 -2.3499 7 6 3.1085 -0.1886 -2.7896 8 6 3.4405 -0.5727 -4.2329 9 1 2.8752 -1.4620 -4.5114 10 6 4.9381 -0.8623 -4.3519 11 7 3.0842 0.5322 -5.1265 12 6 3.8578 1.5988 -5.4178 13 6 3.1694 2.3854 -6.2771 14 6 1.9324 1.7789 -6.5188 15 7 1.8823 0.6653 -5.8337 16 6 3.3796 -2.4076 0.3180 17 6 2.0780 -2.7964 1.0231 18 6 2.3297 -4.0166 1.9145 19 7 3.4424 -3.7152 2.8254 20 6 3.2977 -3.8689 4.1783 21 1 2.3235 -3.7639 4.6327 22 6 4.4031 -4.1598 4.9660 23 7 5.5066 -4.6129 4.4098 24 14 4.3245 -3.9081 6.8153 25 1 2.9821 -3.3942 7.1883 26 1 4.5669 -5.2024 7.5017 27 1 5.3619 -2.9281 7.2260 28 6 4.7132 -3.2451 2.2570 29 6 4.4347 -2.0338 1.3617 30 1 -1.0499 -0.0002 -0.0003 31 1 3.0093 0.1089 1.0220 32 1 3.0089 0.8318 -0.6046 33 1 3.7385 0.6458 -2.4818 34 1 2.0605 0.1036 -2.7230 35 1 5.5035 0.0272 -4.0733 36 1 5.2033 -1.6842 -3.6870 37 1 5.1748 -1.1354 -5.3802 38 1 4.8490 1.7904 -5.0337 39 1 3.5141 3.3168 -6.7013 40 1 1.1549 2.1613 -7.1636 41 1 3.7367 -3.2498 -0.2744 42 1 1.7331 -1.9632 1.6355 43 1 1.3198 -3.0399 0.2789 44 1 2.5874 -4.8753 1.2945 45 1 1.4336 -4.2398 2.4935 46 1 6.2789 -4.8165 4.9602 47 1 5.1652 -4.0409 1.6650 48 1 5.3910 -2.9575 3.0606 49 1 5.3541 -1.7344 0.8584 50 1 4.0674 -1.2079 1.9708 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699785106.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:50 Heat of formation + Delta-G solvation = 109.397040 kcal Electronic energy + Delta-G solvation = -30567.059512 eV Core-core repulsion = 26597.986684 eV Total energy + Delta-G solvation = -3969.072828 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.19002 -41.40725 -39.22858 -37.15331 -36.34236 -34.66006 -33.53174 -32.08668 -31.56506 -31.11405 -30.62190 -29.03938 -28.23682 -26.80125 -24.65368 -23.91510 -23.48435 -21.94762 -21.23463 -20.82687 -20.52760 -19.12146 -18.67366 -18.57284 -17.60480 -17.32067 -16.80345 -16.71555 -16.01306 -15.68613 -15.58733 -15.40758 -15.13556 -14.88754 -14.70804 -14.57215 -14.36324 -14.32471 -14.06054 -14.04567 -13.79135 -13.49635 -13.24506 -13.04552 -12.88436 -12.68000 -12.62039 -12.49666 -12.24608 -12.16966 -12.01350 -11.94768 -11.57006 -11.55225 -11.42717 -11.33657 -11.16074 -10.81381 -10.58731 -10.38232 -9.85352 -9.49709 -8.72366 -7.88928 -5.34866 1.00354 1.31495 1.44554 1.46562 1.48591 1.59024 1.64461 1.89610 2.01196 2.34438 2.50603 3.27014 3.37400 3.46130 3.54872 3.59704 3.64024 3.88073 4.00055 4.04398 4.04719 4.15356 4.18167 4.30666 4.37581 4.43555 4.44802 4.51186 4.60854 4.73197 4.77367 4.79149 4.82577 4.83819 4.97668 4.99504 5.01171 5.07016 5.12766 5.19900 5.22857 5.27005 5.43403 5.49855 5.63175 5.69990 5.79890 6.16997 6.28282 6.37641 6.67801 6.83409 7.02175 7.13087 7.82375 8.35303 9.18221 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.022192 B = 0.002376 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.406941 B =11779.590447 C =12309.709099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.234 4.234 3 C 0.211 3.789 4 N -0.596 5.596 5 C 0.522 3.478 6 O -0.569 6.569 7 C -0.138 4.138 8 C 0.179 3.821 9 H 0.082 0.918 10 C -0.160 4.160 11 N -0.374 5.374 12 C 0.055 3.945 13 C -0.283 4.283 14 C 0.036 3.964 15 N -0.347 5.347 16 C 0.156 3.844 17 C -0.116 4.116 18 C 0.144 3.856 19 N -0.608 5.608 20 C -0.261 4.261 21 H 0.067 0.933 22 C -0.050 4.050 23 N -0.935 5.935 24 Si 0.967 3.033 25 H -0.266 1.266 26 H -0.295 1.295 27 H -0.287 1.287 28 C 0.180 3.820 29 C -0.128 4.128 30 H 0.239 0.761 31 H 0.110 0.890 32 H 0.132 0.868 33 H 0.131 0.869 34 H 0.100 0.900 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.065 0.935 38 H 0.202 0.798 39 H 0.170 0.830 40 H 0.203 0.797 41 H 0.073 0.927 42 H 0.066 0.934 43 H 0.059 0.941 44 H 0.008 0.992 45 H 0.058 0.942 46 H 0.251 0.749 47 H -0.008 1.008 48 H 0.062 0.938 49 H 0.069 0.931 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.306 18.601 -18.159 26.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.235 4.235 3 C 0.090 3.910 4 N -0.326 5.326 5 C 0.311 3.689 6 O -0.448 6.448 7 C -0.179 4.179 8 C 0.077 3.923 9 H 0.100 0.900 10 C -0.218 4.218 11 N -0.157 5.157 12 C -0.091 4.091 13 C -0.312 4.312 14 C -0.149 4.149 15 N -0.168 5.168 16 C 0.053 3.947 17 C -0.156 4.156 18 C 0.018 3.982 19 N -0.331 5.331 20 C -0.391 4.391 21 H 0.085 0.915 22 C -0.245 4.245 23 N -0.581 5.581 24 Si 0.796 3.204 25 H -0.191 1.191 26 H -0.222 1.222 27 H -0.214 1.214 28 C 0.054 3.946 29 C -0.167 4.167 30 H 0.256 0.744 31 H 0.128 0.872 32 H 0.149 0.851 33 H 0.149 0.851 34 H 0.118 0.882 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.084 0.916 38 H 0.219 0.781 39 H 0.187 0.813 40 H 0.220 0.780 41 H 0.091 0.909 42 H 0.084 0.916 43 H 0.078 0.922 44 H 0.026 0.974 45 H 0.076 0.924 46 H 0.060 0.940 47 H 0.010 0.990 48 H 0.080 0.920 49 H 0.088 0.912 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.606 16.860 -17.943 25.048 hybrid contribution 0.281 0.066 0.902 0.947 sum -4.325 16.925 -17.040 24.404 Atomic orbital electron populations 1.25663 0.96850 0.97947 0.99469 1.23802 0.95511 1.02347 1.01826 1.18685 0.83677 0.86092 1.02570 1.48138 1.64401 1.13449 1.06606 1.20742 0.76198 0.89591 0.82380 1.90691 1.47292 1.31881 1.74938 1.22032 1.05411 0.97546 0.92882 1.20798 0.98459 0.86757 0.86319 0.90023 1.22242 0.91594 1.04328 1.03676 1.48933 1.12275 1.18700 1.35748 1.23119 0.99194 0.87977 0.98763 1.21876 0.96057 1.05377 1.07918 1.24418 0.99358 0.92332 0.98787 1.77373 1.04345 1.22034 1.13037 1.20833 0.95470 0.88137 0.90248 1.22101 0.96278 0.99128 0.98054 1.20978 0.91298 0.94195 0.91735 1.44332 1.10336 1.76087 1.02364 1.19518 0.94896 1.41326 0.83340 0.91532 1.25812 0.97236 0.99252 1.02206 1.70188 1.04509 1.47623 1.35797 0.85210 0.77846 0.76923 0.80469 1.19072 1.22193 1.21385 1.20542 0.87878 0.91684 0.94506 1.22306 0.98075 0.99588 0.96762 0.74431 0.87194 0.85052 0.85101 0.88213 0.89372 0.89869 0.91608 0.78089 0.81301 0.78042 0.90879 0.91555 0.92229 0.97443 0.92369 0.94024 0.99007 0.91976 0.91249 0.91311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.62 19.25 74.32 1.43 -2.19 16 2 C -0.23 -5.08 11.92 31.13 0.37 -4.70 16 3 C 0.21 4.12 5.15 84.58 0.44 4.55 16 4 N -0.60 -15.22 2.37 -808.15 -1.91 -17.14 16 5 C 0.52 13.32 7.39 87.66 0.65 13.96 16 6 O -0.57 -18.74 13.29 -3.03 -0.04 -18.78 16 7 C -0.14 -2.48 4.05 29.85 0.12 -2.36 16 8 C 0.18 3.56 3.05 44.99 0.14 3.69 16 9 H 0.08 2.08 7.95 -2.39 -0.02 2.06 16 10 C -0.16 -2.71 8.58 71.98 0.62 -2.10 16 11 N -0.37 -7.30 3.53 -327.49 -1.15 -8.45 16 12 C 0.06 0.77 10.59 83.54 0.88 1.66 16 13 C -0.28 -3.92 10.80 21.99 0.24 -3.68 16 14 C 0.04 0.63 12.03 85.23 1.02 1.65 16 15 N -0.35 -8.12 12.58 -57.02 -0.72 -8.84 16 16 C 0.16 5.19 2.48 45.02 0.11 5.30 16 17 C -0.12 -3.99 4.73 30.67 0.15 -3.84 16 18 C 0.14 6.12 6.52 86.36 0.56 6.68 16 19 N -0.61 -30.32 2.99 -699.10 -2.09 -32.41 16 20 C -0.26 -14.16 9.58 84.03 0.81 -13.36 16 21 H 0.07 3.53 7.89 -2.91 -0.02 3.51 16 22 C -0.05 -2.74 4.92 84.86 0.42 -2.32 16 23 N -0.94 -54.92 11.19 21.65 0.24 -54.68 16 24 Si 0.97 44.20 29.59 68.60 2.03 46.23 16 25 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 26 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 27 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 28 C 0.18 8.57 5.30 86.36 0.46 9.03 16 29 C -0.13 -4.52 5.31 30.67 0.16 -4.36 16 30 H 0.24 3.19 7.80 -4.42 -0.03 3.15 16 31 H 0.11 2.18 6.46 -2.39 -0.02 2.16 16 32 H 0.13 1.61 6.44 -2.39 -0.02 1.59 16 33 H 0.13 1.51 7.40 -2.39 -0.02 1.49 16 34 H 0.10 1.91 7.95 -2.39 -0.02 1.89 16 35 H 0.09 0.98 7.16 -2.38 -0.02 0.96 16 36 H 0.08 1.84 5.95 -2.39 -0.01 1.82 16 37 H 0.06 1.09 8.14 -2.39 -0.02 1.08 16 38 H 0.20 1.36 7.26 -2.91 -0.02 1.34 16 39 H 0.17 1.41 8.06 -2.91 -0.02 1.39 16 40 H 0.20 2.21 8.06 -2.91 -0.02 2.18 16 41 H 0.07 2.85 6.90 -2.39 -0.02 2.83 16 42 H 0.07 2.25 7.02 -2.39 -0.02 2.24 16 43 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 45 H 0.06 2.41 7.93 -2.39 -0.02 2.39 16 46 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 47 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 48 H 0.06 3.31 6.06 -2.39 -0.01 3.30 16 49 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 50 H 0.07 2.31 6.72 -2.39 -0.02 2.29 16 Total: -1.00 -73.16 400.55 5.85 -67.31 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: 0.93 Total: 19.14 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: 8.57 Total: 7.62 kcal Atomic # 7 Polarization: -115.88 SS G_CDS: -5.64 Total: -121.52 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: -0.04 Total: -18.78 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -73.16 5.85 -67.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699785106.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.706 kcal (2) G-P(sol) polarization free energy of solvation -73.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds