Wall clock time and date at job start Wed Apr 1 2020 03:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09008 * 109.47153 * 2 1 4 4 N 1.46492 * 109.47213 * 239.99621 * 2 1 3 5 5 C 1.36939 * 120.00186 * 85.00304 * 4 2 1 6 6 H 1.08005 * 119.99698 * 359.97438 * 5 4 2 7 7 C 1.38813 * 120.00164 * 180.02562 * 5 4 2 8 8 N 1.31628 * 119.99769 * 179.97438 * 7 5 4 9 9 Si 1.86793 * 120.00113 * 359.97438 * 7 5 4 10 10 H 1.48494 * 109.47478 * 89.99880 * 9 7 5 11 11 H 1.48506 * 109.47170 * 210.00293 * 9 7 5 12 12 H 1.48501 * 109.47101 * 329.99728 * 9 7 5 13 13 C 1.52998 * 109.47180 * 119.99563 * 2 1 3 14 14 H 1.09000 * 109.49821 * 179.97438 * 13 2 1 15 15 C 1.53038 * 109.49880 * 300.00294 * 13 2 1 16 16 C 1.53041 * 109.54078 * 181.31522 * 15 13 2 17 17 C 1.53194 * 109.31294 * 298.63357 * 16 15 13 18 18 N 1.46926 * 108.77476 * 54.62919 * 17 16 15 19 19 C 1.34783 * 120.62782 * 126.36721 * 18 17 16 20 20 O 1.21550 * 119.99732 * 185.78683 * 19 18 17 21 21 C 1.47830 * 119.99733 * 5.78853 * 19 18 17 22 22 C 1.39965 * 120.93987 * 48.73576 * 21 19 18 23 23 N 1.32135 * 118.92559 * 179.97438 * 22 21 19 24 24 C 1.31886 * 120.96501 * 0.02562 * 23 22 21 25 25 N 1.31852 * 122.09411 * 359.97438 * 24 23 22 26 26 C 1.32165 * 120.96940 * 0.02562 * 25 24 23 27 27 C 1.50705 * 120.53551 * 180.27091 * 26 25 24 28 28 C 1.53003 * 117.49877 * 1.89630 * 27 26 25 29 29 C 1.52998 * 117.50020 * 293.27219 * 27 26 25 30 30 C 1.46926 * 118.74355 * 306.64783 * 18 17 16 31 31 H 1.08998 * 109.47161 * 60.00263 * 1 2 3 32 32 H 1.08994 * 109.47274 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.47251 * 300.00287 * 1 2 3 34 34 H 0.97003 * 120.00105 * 264.99604 * 4 2 1 35 35 H 0.96996 * 119.99420 * 179.97438 * 8 7 5 36 36 H 1.09004 * 109.46493 * 61.29290 * 15 13 2 37 37 H 1.09010 * 109.45245 * 301.32679 * 15 13 2 38 38 H 1.08999 * 109.49970 * 178.68169 * 16 15 13 39 39 H 1.09002 * 109.49828 * 58.58720 * 16 15 13 40 40 H 1.09001 * 109.58241 * 294.84547 * 17 16 15 41 41 H 1.08995 * 109.58688 * 174.42453 * 17 16 15 42 42 H 1.08005 * 120.53941 * 359.95438 * 22 21 19 43 43 H 1.08001 * 118.95317 * 180.02562 * 24 23 22 44 44 H 1.08999 * 115.54549 * 147.60828 * 27 26 25 45 45 H 1.08998 * 117.49785 * 359.97438 * 28 27 26 46 46 H 1.09002 * 117.49162 * 145.01832 * 28 27 26 47 47 H 1.08997 * 117.50020 * 214.98075 * 29 27 26 48 48 H 1.09002 * 117.50113 * 0.02562 * 29 27 26 49 49 H 1.08991 * 109.58698 * 173.13791 * 30 18 17 50 50 H 1.08996 * 109.58560 * 293.57202 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1492 -0.0076 -2.3757 6 1 1.8920 1.0402 -2.4243 7 6 2.6114 -0.6622 -3.5092 8 7 2.7367 -0.0057 -4.6431 9 14 3.0556 -2.4746 -3.4252 10 1 1.8583 -3.2930 -3.7440 11 1 4.1307 -2.7668 -4.4071 12 1 3.5312 -2.8048 -2.0577 13 6 2.0400 -0.7211 1.2493 14 1 3.1300 -0.7218 1.2495 15 6 1.5302 -0.0002 2.4992 16 6 2.0666 -0.7014 3.7493 17 6 1.5533 -2.1444 3.7803 18 7 1.9148 -2.8023 2.5173 19 6 2.5906 -3.9684 2.5193 20 8 2.9757 -4.4495 1.4716 21 6 2.8633 -4.6624 3.7958 22 6 1.8443 -4.8746 4.7315 23 7 2.1324 -5.4998 5.8594 24 6 3.3573 -5.9203 6.1084 25 7 4.3465 -5.7414 5.2551 26 6 4.1475 -5.1257 4.1026 27 6 5.2838 -4.9319 3.1319 28 6 6.6471 -5.5111 3.5153 29 6 6.4207 -3.9983 3.5523 30 6 1.5312 -2.1616 1.2519 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8900 34 1 2.2491 -1.6318 -1.1524 35 1 3.0600 -0.4630 -5.4351 36 1 0.4404 -0.0203 2.5110 37 1 1.8741 1.0342 2.4873 38 1 1.7223 -0.1735 4.6386 39 1 3.1564 -0.7033 3.7259 40 1 0.4694 -2.1442 3.8950 41 1 2.0109 -2.6771 4.6139 42 1 0.8389 -4.5325 4.5351 43 1 3.5565 -6.4280 7.0406 44 1 5.0087 -4.9468 2.0773 45 1 6.7222 -6.0319 4.4698 46 1 7.2692 -5.9073 2.7127 47 1 6.8939 -3.3994 2.7742 48 1 6.3470 -3.5246 4.5312 49 1 1.9743 -2.7056 0.4179 50 1 0.4455 -2.1628 1.1562 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715465152.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:13 Heat of formation + Delta-G solvation = 56.861545 kcal Electronic energy + Delta-G solvation = -31311.474007 eV Core-core repulsion = 27340.123069 eV Total energy + Delta-G solvation = -3971.350938 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.80298 -40.10471 -38.13003 -37.46988 -35.72416 -33.85777 -33.23273 -32.35789 -32.01411 -30.22235 -28.30441 -26.43374 -25.80542 -24.90834 -24.23906 -23.08255 -22.57828 -21.55271 -21.32415 -20.13128 -18.88164 -18.36293 -17.79200 -17.34035 -17.19628 -16.30370 -15.71655 -15.33604 -15.04326 -14.77639 -14.71392 -14.50664 -14.39578 -14.09764 -14.05285 -13.58343 -13.28052 -13.10175 -12.71831 -12.66684 -12.32196 -12.22266 -12.02928 -11.84284 -11.69996 -11.62133 -11.44111 -11.20658 -10.93716 -10.82773 -10.74129 -10.61014 -10.53759 -10.39824 -10.16719 -10.02849 -9.90203 -9.69024 -9.65678 -9.53280 -8.91957 -8.69751 -7.26075 -5.75013 -3.10643 0.17063 0.56916 2.40770 2.74291 3.18407 3.43049 3.49404 3.49808 3.52079 3.66827 3.70110 3.92282 4.10151 4.49384 4.53002 4.63002 4.68812 4.70588 4.74066 4.76148 4.82926 4.96641 5.03434 5.12983 5.23893 5.35710 5.41121 5.43640 5.51946 5.54369 5.61298 5.66790 5.68904 5.73553 5.84688 5.88075 5.93111 5.93315 5.98610 6.11766 6.18806 6.20525 6.35694 6.43996 6.48338 6.56197 6.75377 7.00812 7.18600 7.59680 7.92769 8.00872 8.43994 9.22585 9.95607 10.14344 11.43172 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012107 B = 0.003593 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2312.195780 B = 7790.994639 C = 9119.503166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.186 3.814 3 H 0.059 0.941 4 N -0.750 5.750 5 C -0.243 4.243 6 H 0.090 0.910 7 C 0.006 3.994 8 N -0.934 5.934 9 Si 0.877 3.123 10 H -0.284 1.284 11 H -0.291 1.291 12 H -0.273 1.273 13 C -0.107 4.107 14 H 0.075 0.925 15 C -0.114 4.114 16 C -0.133 4.133 17 C 0.103 3.897 18 N -0.600 5.600 19 C 0.569 3.431 20 O -0.519 6.519 21 C -0.226 4.226 22 C 0.182 3.818 23 N -0.525 5.525 24 C 0.311 3.689 25 N -0.519 5.519 26 C 0.260 3.740 27 C -0.140 4.140 28 C -0.151 4.151 29 C -0.153 4.153 30 C 0.114 3.886 31 H 0.058 0.942 32 H 0.047 0.953 33 H 0.043 0.957 34 H 0.361 0.639 35 H 0.259 0.741 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.174 0.826 43 H 0.201 0.799 44 H 0.145 0.855 45 H 0.109 0.891 46 H 0.101 0.899 47 H 0.105 0.895 48 H 0.094 0.906 49 H 0.095 0.905 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.049 -7.627 25.883 26.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.076 3.924 3 H 0.077 0.923 4 N -0.393 5.393 5 C -0.372 4.372 6 H 0.108 0.892 7 C -0.190 4.190 8 N -0.582 5.582 9 Si 0.707 3.293 10 H -0.211 1.211 11 H -0.217 1.217 12 H -0.199 1.199 13 C -0.128 4.128 14 H 0.093 0.907 15 C -0.152 4.152 16 C -0.172 4.172 17 C -0.020 4.020 18 N -0.333 5.333 19 C 0.354 3.646 20 O -0.395 6.395 21 C -0.233 4.233 22 C 0.016 3.984 23 N -0.239 5.239 24 C 0.024 3.976 25 N -0.233 5.233 26 C 0.114 3.886 27 C -0.159 4.159 28 C -0.188 4.188 29 C -0.191 4.191 30 C -0.007 4.007 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.195 0.805 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.191 0.809 43 H 0.218 0.782 44 H 0.163 0.837 45 H 0.127 0.873 46 H 0.119 0.881 47 H 0.124 0.876 48 H 0.113 0.887 49 H 0.114 0.886 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.442 -8.188 25.990 27.253 hybrid contribution -0.015 -0.897 -0.795 1.199 sum 0.426 -9.085 25.195 26.786 Atomic orbital electron populations 1.22546 0.98961 1.00864 1.00621 1.20141 0.92034 0.95606 0.84628 0.92333 1.42880 1.79713 1.09581 1.07160 1.19053 1.37049 0.95579 0.85563 0.89196 1.24645 1.01341 0.97396 0.95572 1.69704 1.52702 1.35566 1.00250 0.86654 0.78297 0.86841 0.77472 1.21066 1.21736 1.19875 1.21749 1.01219 0.94004 0.95779 0.90651 1.21619 1.01065 0.99422 0.93085 1.21914 1.01504 0.94618 0.99126 1.21909 1.00476 0.94099 0.85557 1.48088 1.55729 1.21282 1.08186 1.17812 0.78071 0.80965 0.87722 1.90822 1.50591 1.65739 1.32343 1.21539 0.96952 1.06320 0.98536 1.23492 0.99155 0.88985 0.86775 1.68465 1.22667 1.12231 1.20523 1.25175 0.83381 0.91371 0.97641 1.68237 1.36059 1.15614 1.03371 1.20858 0.91763 0.85912 0.90103 1.21351 0.87190 1.08427 0.98952 1.22972 0.96008 0.95846 1.03971 1.22980 0.99423 0.93619 1.03048 1.21823 1.00307 0.93558 0.85044 0.92310 0.93447 0.93858 0.80495 0.93098 0.91115 0.91208 0.90653 0.91520 0.90703 0.90590 0.80892 0.78214 0.83739 0.87287 0.88083 0.87615 0.88709 0.88631 0.90421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.72 8.79 37.16 0.33 -2.39 16 2 C 0.19 3.33 2.72 -67.94 -0.18 3.14 16 3 H 0.06 1.10 8.08 -51.92 -0.42 0.68 16 4 N -0.75 -17.39 4.85 -53.43 -0.26 -17.64 16 5 C -0.24 -6.78 10.41 -15.06 -0.16 -6.94 16 6 H 0.09 2.67 8.06 -52.48 -0.42 2.25 16 7 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 8 N -0.93 -29.54 13.97 55.49 0.78 -28.76 16 9 Si 0.88 22.85 27.73 -169.99 -4.71 18.13 16 10 H -0.28 -7.37 7.11 56.52 0.40 -6.97 16 11 H -0.29 -7.67 7.11 56.52 0.40 -7.27 16 12 H -0.27 -6.89 6.52 56.52 0.37 -6.53 16 13 C -0.11 -1.56 2.32 -90.72 -0.21 -1.77 16 14 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 15 C -0.11 -1.21 4.78 -26.69 -0.13 -1.33 16 16 C -0.13 -1.17 6.08 -26.61 -0.16 -1.33 16 17 C 0.10 0.90 5.34 -3.71 -0.02 0.88 16 18 N -0.60 -7.41 2.98 -174.15 -0.52 -7.93 16 19 C 0.57 8.03 6.82 -12.33 -0.08 7.94 16 20 O -0.52 -9.40 14.48 5.32 0.08 -9.33 16 21 C -0.23 -2.66 4.82 -104.70 -0.50 -3.16 16 22 C 0.18 1.75 8.89 -16.77 -0.15 1.60 16 23 N -0.53 -5.03 10.42 -14.24 -0.15 -5.17 16 24 C 0.31 2.75 12.27 -92.03 -1.13 1.62 16 25 N -0.52 -5.53 9.45 -10.48 -0.10 -5.63 16 26 C 0.26 3.10 6.53 -81.82 -0.53 2.57 16 27 C -0.14 -1.69 5.45 -91.77 -0.50 -2.19 16 28 C -0.15 -1.47 10.04 -26.73 -0.27 -1.74 16 29 C -0.15 -1.53 10.23 -26.73 -0.27 -1.81 16 30 C 0.11 1.67 5.21 -3.93 -0.02 1.64 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.05 0.74 6.32 -51.93 -0.33 0.41 16 33 H 0.04 0.55 6.46 -51.93 -0.34 0.22 16 34 H 0.36 8.49 4.03 -40.82 -0.16 8.32 16 35 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 36 H 0.07 0.69 6.50 -51.93 -0.34 0.35 16 37 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.08 0.61 5.17 -51.93 -0.27 0.34 16 42 H 0.17 1.25 7.44 -52.48 -0.39 0.86 16 43 H 0.20 1.03 8.06 -52.49 -0.42 0.60 16 44 H 0.15 2.08 6.20 -51.93 -0.32 1.76 16 45 H 0.11 1.03 7.58 -51.93 -0.39 0.64 16 46 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 47 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 48 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 49 H 0.10 1.75 5.58 -51.93 -0.29 1.46 16 50 H 0.08 1.05 6.16 -51.93 -0.32 0.73 16 LS Contribution 388.04 15.07 5.85 5.85 Total: -1.00 -34.08 388.04 -10.52 -44.60 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -7.39 Total: 9.05 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: -4.09 Total: -3.17 kcal Atomic # 7 Polarization: -64.89 SS G_CDS: -0.25 Total: -65.14 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: 0.08 Total: -9.33 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -4.71 Total: 18.13 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.08 -10.52 -44.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715465152.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.465 kcal (2) G-P(sol) polarization free energy of solvation -34.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds