Wall clock time and date at job start Wed Apr 1 2020 03:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.46851 * 2 1 4 4 C 1.36937 * 120.00278 * 275.30899 * 3 2 1 5 5 H 1.08004 * 119.99822 * 37.57609 * 4 3 2 6 6 C 1.38810 * 120.00557 * 217.58357 * 4 3 2 7 7 N 1.31622 * 119.99656 * 21.42006 * 6 4 3 8 8 Si 1.86798 * 120.00401 * 201.42478 * 6 4 3 9 9 H 1.48501 * 109.47060 * 89.99372 * 8 6 4 10 10 H 1.48494 * 109.47404 * 209.99903 * 8 6 4 11 11 H 1.48498 * 109.46718 * 330.00083 * 8 6 4 12 12 C 1.46506 * 120.00087 * 95.31231 * 3 2 1 13 13 C 1.52999 * 109.47159 * 269.99887 * 12 3 2 14 14 C 1.52995 * 109.47153 * 180.02562 * 13 12 3 15 15 N 1.46500 * 109.47019 * 180.02562 * 14 13 12 16 16 C 1.34777 * 120.00119 * 179.97438 * 15 14 13 17 17 O 1.21284 * 119.99742 * 359.97438 * 16 15 14 18 18 C 1.50697 * 120.00426 * 179.97438 * 16 15 14 19 19 H 1.08997 * 109.47019 * 59.99565 * 18 16 15 20 20 C 1.53000 * 109.46946 * 300.00268 * 18 16 15 21 21 N 1.46496 * 109.47358 * 179.97438 * 18 16 15 22 22 C 1.36036 * 126.34912 * 60.02327 * 21 18 16 23 23 N 1.30106 * 110.10161 * 179.73829 * 22 21 18 24 24 C 1.35788 * 109.64451 * 0.22759 * 23 22 21 25 25 C 1.39736 * 133.61076 * 179.97438 * 24 23 22 26 26 C 1.36605 * 119.89331 * 180.02562 * 25 24 23 27 27 C 1.38780 * 120.66565 * 0.02701 * 26 25 24 28 28 C 1.37847 * 120.45067 * 0.02562 * 27 26 25 29 29 C 1.38049 * 126.34819 * 240.14945 * 21 18 16 30 30 H 1.09000 * 109.47102 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46557 * 299.99951 * 1 2 3 32 32 H 1.08994 * 109.47006 * 59.99805 * 1 2 3 33 33 H 1.08997 * 109.46888 * 240.00091 * 2 1 3 34 34 H 1.08999 * 109.47101 * 119.99721 * 2 1 3 35 35 H 0.96998 * 120.00163 * 179.97438 * 7 6 4 36 36 H 1.09005 * 109.47067 * 149.99715 * 12 3 2 37 37 H 1.09004 * 109.47154 * 29.99689 * 12 3 2 38 38 H 1.08997 * 109.47251 * 59.99666 * 13 12 3 39 39 H 1.09004 * 109.46926 * 299.99941 * 13 12 3 40 40 H 1.08997 * 109.47530 * 59.99574 * 14 13 12 41 41 H 1.09004 * 109.46941 * 299.99668 * 14 13 12 42 42 H 0.97003 * 120.00026 * 359.97438 * 15 14 13 43 43 H 1.09001 * 109.47156 * 179.97438 * 20 18 16 44 44 H 1.09005 * 109.46912 * 299.99663 * 20 18 16 45 45 H 1.08995 * 109.47741 * 59.99404 * 20 18 16 46 46 H 1.07998 * 124.94922 * 0.02562 * 22 21 18 47 47 H 1.08004 * 120.05275 * 359.97438 * 25 24 23 48 48 H 1.07991 * 119.66965 * 180.02562 * 26 25 24 49 49 H 1.07997 * 119.77471 * 179.97438 * 27 26 25 50 50 H 1.08006 * 120.15477 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1430 2.0634 -1.1808 5 1 1.4105 1.9278 -1.9627 6 6 3.2111 2.9290 -1.3729 7 7 4.3026 2.7981 -0.6491 8 14 3.0993 4.2796 -2.6585 9 1 2.5374 5.5069 -2.0395 10 1 4.4548 4.5696 -3.1910 11 1 2.2165 3.8357 -3.7671 12 6 2.3732 2.0327 1.2633 13 6 1.1426 2.7383 1.8366 14 6 1.5133 3.4192 3.1556 15 7 0.3348 4.0942 3.7048 16 6 0.4246 4.7651 4.8703 17 8 1.4809 4.8096 5.4646 18 6 -0.7875 5.4600 5.4350 19 1 -1.5760 4.7286 5.6123 20 6 -1.2821 6.5119 4.4401 21 7 -0.4328 6.1109 6.6986 22 6 0.5091 7.0771 6.8713 23 7 0.5596 7.4340 8.1215 24 6 -0.3439 6.7168 8.8378 25 6 -0.7029 6.6928 10.1881 26 6 -1.6760 5.8362 10.6187 27 6 -2.3148 4.9852 9.7278 28 6 -1.9763 4.9907 8.3916 29 6 -0.9908 5.8557 7.9353 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5139 0.8901 32 1 -0.3633 0.5138 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 5.0491 3.4027 -0.7835 36 1 3.1617 2.7642 1.0859 37 1 2.7255 1.2834 1.9722 38 1 0.3541 2.0069 2.0139 39 1 0.7902 3.4877 1.1278 40 1 2.3016 4.1506 2.9779 41 1 1.8659 2.6701 3.8646 42 1 -0.5101 4.0583 3.2297 43 1 -2.1591 7.0142 4.8484 44 1 -0.4936 7.2434 4.2628 45 1 -1.5461 6.0273 3.5002 46 1 1.1221 7.4912 6.0845 47 1 -0.2113 7.3499 10.8902 48 1 -1.9509 5.8209 11.6629 49 1 -3.0818 4.3135 10.0840 50 1 -2.4763 4.3261 7.7025 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731325544.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:05 Heat of formation + Delta-G solvation = 54.508154 kcal Electronic energy + Delta-G solvation = -29541.265468 eV Core-core repulsion = 25569.812480 eV Total energy + Delta-G solvation = -3971.452988 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.42127 -39.90361 -37.50298 -36.55636 -35.14727 -35.00682 -32.09230 -31.91810 -31.07608 -29.65950 -29.37328 -28.55491 -25.87972 -24.76112 -23.61871 -23.41635 -22.30633 -21.58591 -21.19308 -20.31743 -19.72475 -17.77684 -17.68307 -16.91092 -16.73743 -15.98713 -15.77422 -15.61461 -15.28342 -14.96029 -14.57010 -14.34383 -14.12096 -14.00146 -13.79019 -13.65316 -13.49432 -13.03131 -12.89073 -12.69923 -12.43835 -12.32203 -12.21804 -11.87984 -11.68137 -11.60192 -11.53991 -11.25636 -11.10213 -10.84640 -10.82466 -10.66215 -10.52087 -10.14229 -10.08943 -9.92941 -9.71673 -9.62938 -9.09332 -8.54081 -8.53362 -8.29111 -6.63478 -5.84895 -3.44505 0.79112 1.31519 2.15885 2.32564 2.64461 3.08261 3.29737 3.38331 3.39210 3.71598 4.09708 4.14151 4.30779 4.33350 4.40924 4.44782 4.73086 4.82187 5.03751 5.05336 5.15769 5.22317 5.24093 5.31544 5.34261 5.48692 5.51757 5.55231 5.71811 5.87279 5.91588 5.98703 6.12759 6.21458 6.25906 6.30302 6.32106 6.33842 6.34977 6.48826 6.62151 6.66354 6.66949 6.84763 6.88959 6.99696 7.09913 7.34179 7.59487 7.73838 7.76480 7.98099 8.46071 9.13252 9.75336 10.34282 11.14672 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016978 B = 0.002138 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.836328 B =13091.973125 C =13907.769442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.140 3.860 3 N -0.584 5.584 4 C -0.261 4.261 5 H 0.060 0.940 6 C 0.013 3.987 7 N -0.886 5.886 8 Si 0.896 3.104 9 H -0.286 1.286 10 H -0.291 1.291 11 H -0.277 1.277 12 C 0.151 3.849 13 C -0.146 4.146 14 C 0.120 3.880 15 N -0.715 5.715 16 C 0.496 3.504 17 O -0.524 6.524 18 C 0.121 3.879 19 H 0.123 0.877 20 C -0.161 4.161 21 N -0.475 5.475 22 C 0.294 3.706 23 N -0.502 5.502 24 C 0.049 3.951 25 C -0.065 4.065 26 C -0.131 4.131 27 C -0.106 4.106 28 C -0.110 4.110 29 C 0.048 3.952 30 H 0.035 0.965 31 H 0.042 0.958 32 H 0.048 0.952 33 H 0.043 0.957 34 H 0.033 0.967 35 H 0.255 0.745 36 H 0.095 0.905 37 H 0.025 0.975 38 H 0.051 0.949 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.400 0.600 43 H 0.077 0.923 44 H 0.074 0.926 45 H 0.087 0.913 46 H 0.208 0.792 47 H 0.128 0.872 48 H 0.127 0.873 49 H 0.128 0.872 50 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.710 5.280 15.970 23.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.013 3.987 3 N -0.304 5.304 4 C -0.391 4.391 5 H 0.077 0.923 6 C -0.188 4.188 7 N -0.528 5.528 8 Si 0.725 3.275 9 H -0.213 1.213 10 H -0.217 1.217 11 H -0.203 1.203 12 C 0.023 3.977 13 C -0.187 4.187 14 C -0.003 4.003 15 N -0.367 5.367 16 C 0.279 3.721 17 O -0.399 6.399 18 C 0.013 3.987 19 H 0.141 0.859 20 C -0.219 4.219 21 N -0.165 5.165 22 C 0.008 3.992 23 N -0.220 5.220 24 C -0.069 4.069 25 C -0.085 4.085 26 C -0.151 4.151 27 C -0.125 4.125 28 C -0.131 4.131 29 C -0.061 4.061 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.052 0.948 35 H 0.066 0.934 36 H 0.113 0.887 37 H 0.043 0.957 38 H 0.070 0.930 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.235 0.765 43 H 0.096 0.904 44 H 0.093 0.907 45 H 0.106 0.894 46 H 0.225 0.775 47 H 0.145 0.855 48 H 0.145 0.855 49 H 0.146 0.854 50 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -14.224 5.914 16.597 22.644 hybrid contribution -0.916 0.028 -1.415 1.686 sum -15.139 5.942 15.181 22.248 Atomic orbital electron populations 1.22365 1.00166 0.98921 1.01037 1.20854 0.91663 0.87389 0.98775 1.43743 1.76038 1.08176 1.02464 1.18989 1.04711 1.21222 0.94173 0.92272 1.25204 0.94199 1.01320 0.98069 1.69997 1.03173 1.37216 1.42388 0.86404 0.77020 0.82542 0.81493 1.21327 1.21690 1.20269 1.20794 0.94347 0.96688 0.85833 1.22557 1.02557 0.99898 0.93679 1.21569 0.86695 0.96213 0.95794 1.46132 1.14974 1.53115 1.22468 1.20503 0.89833 0.79924 0.81828 1.90795 1.29526 1.60453 1.59167 1.21272 0.97009 0.96740 0.83654 0.85924 1.22173 1.02853 0.98534 0.98309 1.45053 1.32565 1.33095 1.05809 1.25192 0.90444 0.88057 0.95499 1.70520 1.22052 1.27337 1.02097 1.19089 0.96659 0.96777 0.94359 1.20022 0.97246 0.99110 0.92101 1.20623 0.97483 0.97148 0.99868 1.20846 1.00173 0.99436 0.92087 1.19941 0.97581 0.99238 0.96363 1.18886 1.00171 1.01694 0.85328 0.94605 0.93888 0.93246 0.93835 0.94843 0.93447 0.88707 0.95657 0.92991 0.91601 0.91180 0.91795 0.76548 0.90377 0.90742 0.89407 0.77531 0.85456 0.85476 0.85385 0.86261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.80 10.21 37.16 0.38 -2.42 16 2 C 0.14 2.81 6.44 -4.04 -0.03 2.78 16 3 N -0.58 -13.63 2.43 -173.23 -0.42 -14.05 16 4 C -0.26 -6.76 9.45 -15.06 -0.14 -6.90 16 5 H 0.06 1.54 7.92 -52.48 -0.42 1.13 16 6 C 0.01 0.34 4.95 -17.43 -0.09 0.25 16 7 N -0.89 -24.63 11.47 55.49 0.64 -23.99 16 8 Si 0.90 20.71 29.61 -169.99 -5.03 15.68 16 9 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 12 C 0.15 3.24 5.33 -4.04 -0.02 3.22 16 13 C -0.15 -2.47 5.65 -26.73 -0.15 -2.62 16 14 C 0.12 1.81 5.67 -4.04 -0.02 1.79 16 15 N -0.72 -8.30 5.45 -60.30 -0.33 -8.63 16 16 C 0.50 6.17 7.12 -10.99 -0.08 6.09 16 17 O -0.52 -8.89 15.48 5.55 0.09 -8.80 16 18 C 0.12 1.09 3.40 -69.09 -0.23 0.85 16 19 H 0.12 0.83 7.62 -51.93 -0.40 0.44 16 20 C -0.16 -1.04 9.14 37.16 0.34 -0.70 16 21 N -0.48 -5.53 2.45 -109.94 -0.27 -5.79 16 22 C 0.29 3.75 10.71 -89.79 -0.96 2.79 16 23 N -0.50 -7.35 11.27 -12.05 -0.14 -7.49 16 24 C 0.05 0.67 7.23 -84.70 -0.61 0.06 16 25 C -0.07 -0.72 10.05 -39.61 -0.40 -1.12 16 26 C -0.13 -1.15 9.96 -39.97 -0.40 -1.55 16 27 C -0.11 -0.90 10.03 -39.52 -0.40 -1.30 16 28 C -0.11 -1.09 9.89 -39.50 -0.39 -1.48 16 29 C 0.05 0.59 6.87 -83.98 -0.58 0.01 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.04 0.69 6.64 -51.93 -0.34 0.35 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.04 0.91 8.08 -51.93 -0.42 0.49 16 34 H 0.03 0.63 7.83 -51.93 -0.41 0.23 16 35 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 36 H 0.10 2.36 5.52 -51.93 -0.29 2.07 16 37 H 0.02 0.53 7.86 -51.93 -0.41 0.12 16 38 H 0.05 0.82 6.64 -51.93 -0.34 0.47 16 39 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.40 3.47 7.89 -40.82 -0.32 3.15 16 43 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.52 7.95 -51.93 -0.41 0.11 16 45 H 0.09 0.43 7.56 -51.93 -0.39 0.04 16 46 H 0.21 2.17 8.06 -52.49 -0.42 1.75 16 47 H 0.13 1.22 8.06 -52.48 -0.42 0.79 16 48 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 49 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 50 H 0.12 0.90 7.76 -52.48 -0.41 0.50 16 LS Contribution 410.26 15.07 6.18 6.18 Total: -1.00 -33.14 410.26 -10.98 -44.12 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -7.92 Total: 3.01 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: -3.78 Total: -0.24 kcal Atomic # 7 Polarization: -59.43 SS G_CDS: -0.52 Total: -59.95 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.09 Total: -8.80 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.03 Total: 15.68 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.14 -10.98 -44.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731325544.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.631 kcal (2) G-P(sol) polarization free energy of solvation -33.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds