Wall clock time and date at job start Wed Apr 1 2020 03:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46995 * 2 1 4 4 N 1.46497 * 109.47019 * 239.99459 * 2 1 3 5 5 C 1.36942 * 119.99978 * 85.00219 * 4 2 1 6 6 H 1.08004 * 119.99847 * 359.97438 * 5 4 2 7 7 C 1.38811 * 120.00358 * 179.97438 * 5 4 2 8 8 N 1.31616 * 120.00269 * 180.02562 * 7 5 4 9 9 Si 1.86805 * 119.99678 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.46905 * 89.99766 * 9 7 5 11 11 H 1.48500 * 109.46859 * 209.99623 * 9 7 5 12 12 H 1.48503 * 109.47273 * 329.99847 * 9 7 5 13 13 C 1.52998 * 109.47021 * 119.99452 * 2 1 3 14 14 C 1.53040 * 109.45750 * 60.02901 * 13 2 1 15 15 C 1.53195 * 109.31338 * 178.59870 * 14 13 2 16 16 N 1.46931 * 108.76365 * 54.65547 * 15 14 13 17 17 C 1.34770 * 120.62937 * 126.36117 * 16 15 14 18 18 O 1.21480 * 120.00422 * 352.59755 * 17 16 15 19 19 C 1.48466 * 119.99904 * 172.59203 * 17 16 15 20 20 C 1.39537 * 120.54949 * 171.15374 * 19 17 16 21 21 C 1.38755 * 118.25815 * 180.02562 * 20 19 17 22 22 N 1.32203 * 119.15430 * 359.97438 * 21 20 19 23 23 C 1.31882 * 121.03524 * 0.02562 * 22 21 20 24 24 C 1.50698 * 119.04267 * 179.97438 * 23 22 21 25 25 C 1.52992 * 117.49902 * 8.73888 * 24 23 22 26 26 C 1.53001 * 117.49610 * 300.07859 * 24 23 22 27 27 N 1.31587 * 121.91259 * 359.70503 * 23 22 21 28 28 C 1.46931 * 118.73793 * 306.38621 * 16 15 14 29 29 C 1.53040 * 109.46292 * 299.97673 * 13 2 1 30 30 H 1.09004 * 109.46995 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46819 * 60.00356 * 1 2 3 32 32 H 1.08994 * 109.46948 * 300.00635 * 1 2 3 33 33 H 0.97000 * 120.00209 * 264.99961 * 4 2 1 34 34 H 0.97002 * 120.00085 * 180.02562 * 8 7 5 35 35 H 1.08999 * 109.45777 * 179.97438 * 13 2 1 36 36 H 1.09001 * 109.50322 * 298.56356 * 14 13 2 37 37 H 1.09005 * 109.50110 * 58.66185 * 14 13 2 38 38 H 1.08997 * 109.59787 * 294.86887 * 15 14 13 39 39 H 1.09003 * 109.70744 * 174.50174 * 15 14 13 40 40 H 1.07997 * 120.86516 * 0.02562 * 20 19 17 41 41 H 1.08002 * 120.42289 * 180.02562 * 21 20 19 42 42 H 1.09004 * 115.55035 * 154.40991 * 24 23 22 43 43 H 1.09007 * 117.50000 * 0.02562 * 25 24 23 44 44 H 1.09006 * 117.50211 * 145.02232 * 25 24 23 45 45 H 1.09000 * 117.49898 * 214.98094 * 26 24 23 46 46 H 1.09007 * 117.49798 * 359.97438 * 26 24 23 47 47 H 1.08999 * 109.58333 * 293.82077 * 28 16 15 48 48 H 1.09001 * 109.69846 * 173.46635 * 28 16 15 49 49 H 1.08999 * 109.49154 * 301.33641 * 29 13 2 50 50 H 1.09000 * 109.50093 * 61.39784 * 29 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1492 -0.0077 -2.3758 6 1 1.8919 1.0402 -2.4244 7 6 2.6123 -0.6619 -3.5090 8 7 2.7385 -0.0053 -4.6427 9 14 3.0565 -2.4744 -3.4250 10 1 1.8594 -3.2928 -3.7449 11 1 4.1323 -2.7664 -4.4062 12 1 3.5310 -2.8050 -2.0572 13 6 2.0400 -0.7211 1.2493 14 6 1.5303 -2.1641 1.2488 15 6 2.0714 -2.8931 2.4827 16 7 1.7085 -2.1256 3.6820 17 6 1.0551 -2.7151 4.7027 18 8 0.6420 -3.8513 4.5842 19 6 0.8402 -1.9758 5.9722 20 6 0.0118 -2.4986 6.9659 21 6 -0.1558 -1.7675 8.1332 22 7 0.4701 -0.6104 8.2640 23 6 1.2464 -0.1451 7.3047 24 6 1.9379 1.1794 7.5009 25 6 1.8624 1.8168 8.8897 26 6 1.0569 2.4091 7.7307 27 7 1.4387 -0.8061 6.1833 28 6 2.0711 -0.7033 3.7470 29 6 1.5302 0.0009 2.4987 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 0.5139 0.8899 33 1 2.2490 -1.6319 -1.1525 34 1 3.0619 -0.4626 -5.4347 35 1 3.1300 -0.7214 1.2489 36 1 0.4406 -2.1652 1.2742 37 1 1.8741 -2.6712 0.3471 38 1 3.1563 -2.9723 2.4140 39 1 1.6351 -3.8903 2.5413 40 1 -0.4859 -3.4473 6.8298 41 1 -0.7888 -2.1394 8.9253 42 1 2.8577 1.3183 6.9327 43 1 1.3129 1.2779 9.6617 44 1 2.7324 2.3753 9.2352 45 1 1.3973 3.3570 7.3139 46 1 -0.0229 2.2601 7.7394 47 1 3.1560 -0.6040 3.7814 48 1 1.6345 -0.2532 4.6385 49 1 1.8740 1.0352 2.4867 50 1 0.4405 -0.0201 2.5119 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753279359.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:22 Heat of formation + Delta-G solvation = 52.951973 kcal Electronic energy + Delta-G solvation = -30502.631293 eV Core-core repulsion = 26531.110823 eV Total energy + Delta-G solvation = -3971.520470 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.60176 -41.07665 -39.44084 -37.90812 -37.09282 -35.29909 -34.53743 -32.93948 -32.69614 -32.05241 -30.27189 -27.50538 -26.32418 -26.10540 -25.18928 -24.44081 -23.19945 -23.07906 -22.44657 -20.94439 -20.12824 -19.68275 -19.06211 -18.35572 -17.25865 -16.93807 -16.74276 -16.70813 -16.59945 -16.21439 -15.73145 -15.55548 -15.46490 -15.15379 -15.08922 -14.85487 -14.45827 -14.35080 -14.25545 -14.02466 -13.41494 -13.11067 -13.04183 -12.92012 -12.83781 -12.71428 -12.36223 -12.19709 -12.06990 -12.00144 -11.88640 -11.83898 -11.78200 -11.64976 -11.61399 -11.36708 -11.30764 -11.14231 -10.94227 -10.38479 -9.95027 -9.75906 -9.28891 -8.01289 -5.33113 -0.67644 -0.21435 1.35794 1.39091 1.46110 1.51850 1.69774 2.43729 2.48268 2.55304 2.87963 3.11652 3.30190 3.30547 3.57404 3.63645 3.78884 3.84347 3.89129 3.96204 4.01095 4.13049 4.14581 4.19681 4.31036 4.37398 4.49046 4.55485 4.56052 4.62922 4.67761 4.79379 4.86055 4.86848 4.96407 4.99712 5.01366 5.04148 5.05847 5.16856 5.20275 5.25946 5.35540 5.37445 5.38385 5.60801 5.66129 5.70330 5.79959 6.21761 6.23662 6.75318 6.91060 7.10320 7.88060 8.06443 9.20655 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.017325 B = 0.002575 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.763063 B =10870.521578 C =11936.064811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.177 3.823 3 H 0.044 0.956 4 N -0.751 5.751 5 C -0.222 4.222 6 H 0.056 0.944 7 C -0.067 4.067 8 N -0.986 5.986 9 Si 0.949 3.051 10 H -0.282 1.282 11 H -0.297 1.297 12 H -0.249 1.249 13 C -0.085 4.085 14 C -0.123 4.123 15 C 0.112 3.888 16 N -0.581 5.581 17 C 0.563 3.437 18 O -0.561 6.561 19 C 0.121 3.879 20 C -0.177 4.177 21 C 0.168 3.832 22 N -0.511 5.511 23 C 0.337 3.663 24 C -0.123 4.123 25 C -0.143 4.143 26 C -0.148 4.148 27 N -0.490 5.490 28 C 0.076 3.924 29 C -0.120 4.120 30 H 0.047 0.953 31 H 0.027 0.973 32 H 0.071 0.929 33 H 0.364 0.636 34 H 0.256 0.744 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.170 0.830 41 H 0.219 0.781 42 H 0.139 0.861 43 H 0.103 0.897 44 H 0.118 0.882 45 H 0.120 0.880 46 H 0.089 0.911 47 H 0.073 0.927 48 H 0.153 0.847 49 H 0.090 0.910 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.081 -0.338 34.221 34.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.069 3.931 3 H 0.063 0.937 4 N -0.395 5.395 5 C -0.354 4.354 6 H 0.074 0.926 7 C -0.258 4.258 8 N -0.637 5.637 9 Si 0.776 3.224 10 H -0.208 1.208 11 H -0.224 1.224 12 H -0.174 1.174 13 C -0.104 4.104 14 C -0.162 4.162 15 C -0.010 4.010 16 N -0.311 5.311 17 C 0.349 3.651 18 O -0.440 6.440 19 C -0.025 4.025 20 C -0.200 4.200 21 C 0.001 3.999 22 N -0.225 5.225 23 C 0.072 3.928 24 C -0.142 4.142 25 C -0.180 4.180 26 C -0.186 4.186 27 N -0.207 5.207 28 C -0.045 4.045 29 C -0.158 4.158 30 H 0.067 0.933 31 H 0.046 0.954 32 H 0.090 0.910 33 H 0.198 0.802 34 H 0.065 0.935 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.188 0.812 41 H 0.235 0.765 42 H 0.156 0.844 43 H 0.121 0.879 44 H 0.137 0.863 45 H 0.139 0.861 46 H 0.107 0.893 47 H 0.092 0.908 48 H 0.169 0.831 49 H 0.109 0.891 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.809 0.072 34.097 34.309 hybrid contribution -0.079 -1.940 -1.462 2.431 sum -3.888 -1.868 32.635 32.919 Atomic orbital electron populations 1.22362 0.97983 1.00974 1.00394 1.20403 0.92582 0.95060 0.85034 0.93744 1.42888 1.79873 1.09692 1.07086 1.19047 1.34491 0.94429 0.87391 0.92591 1.25457 1.02739 1.02327 0.95261 1.69879 1.55098 1.37612 1.01155 0.85498 0.77626 0.81068 0.78166 1.20828 1.22385 1.17370 1.21342 1.00251 0.94519 0.94333 1.21905 1.01251 0.96038 0.96959 1.21715 1.00560 0.95612 0.83131 1.48099 1.54311 1.12436 1.16230 1.18144 0.78258 0.85423 0.83253 1.90762 1.51608 1.19311 1.82297 1.21533 0.94480 0.91571 0.94935 1.23152 0.98846 1.03533 0.94497 1.24024 0.92530 0.87524 0.95855 1.68165 1.08369 1.14682 1.31303 1.22739 0.90413 0.95504 0.84168 1.20837 1.01849 0.87056 1.04501 1.23097 1.03158 1.01588 0.90195 1.23074 0.97853 0.95532 1.02117 1.68039 1.23766 1.06868 1.22031 1.23123 1.01565 0.78156 1.01671 1.21983 1.01094 1.00069 0.92702 0.93347 0.95368 0.91043 0.80162 0.93505 0.91148 0.91522 0.91757 0.90045 0.89673 0.81246 0.76499 0.84359 0.87868 0.86345 0.86147 0.89283 0.90849 0.83101 0.89109 0.91639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.37 8.79 71.98 0.63 -4.73 16 2 C 0.18 6.45 2.72 44.99 0.12 6.57 16 3 H 0.04 1.72 8.08 -2.39 -0.02 1.70 16 4 N -0.75 -34.58 4.85 -322.93 -1.56 -36.14 16 5 C -0.22 -12.68 10.41 84.03 0.87 -11.81 16 6 H 0.06 3.50 8.06 -2.91 -0.02 3.48 16 7 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 8 N -0.99 -63.97 13.97 21.65 0.30 -63.67 16 9 Si 0.95 46.01 27.74 68.60 1.90 47.91 16 10 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 11 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 12 H -0.25 -10.79 6.52 99.48 0.65 -10.14 16 13 C -0.09 -2.41 2.14 -10.77 -0.02 -2.43 16 14 C -0.12 -3.45 4.81 30.67 0.15 -3.31 16 15 C 0.11 2.81 6.44 86.36 0.56 3.37 16 16 N -0.58 -13.99 2.97 -821.59 -2.44 -16.43 16 17 C 0.56 14.39 7.67 86.97 0.67 15.06 16 18 O -0.56 -17.16 15.89 -3.65 -0.06 -17.22 16 19 C 0.12 2.50 6.61 42.00 0.28 2.78 16 20 C -0.18 -2.73 9.72 22.71 0.22 -2.51 16 21 C 0.17 1.88 11.31 84.76 0.96 2.84 16 22 N -0.51 -7.63 9.33 -187.89 -1.75 -9.38 16 23 C 0.34 5.61 7.31 138.78 1.01 6.62 16 24 C -0.12 -1.49 6.23 -11.54 -0.07 -1.56 16 25 C -0.14 -1.28 10.01 30.62 0.31 -0.98 16 26 C -0.15 -1.40 10.24 30.62 0.31 -1.09 16 27 N -0.49 -9.35 6.20 -177.06 -1.10 -10.44 16 28 C 0.08 1.57 5.92 86.36 0.51 2.09 16 29 C -0.12 -2.67 4.97 30.67 0.15 -2.52 16 30 H 0.05 1.62 6.46 -2.39 -0.02 1.61 16 31 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.07 1.98 6.46 -2.39 -0.02 1.96 16 33 H 0.36 16.14 3.90 -92.71 -0.36 15.78 16 34 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 35 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.07 1.93 6.51 -2.39 -0.02 1.91 16 37 H 0.06 1.98 6.46 -2.38 -0.02 1.96 16 38 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.08 2.27 7.00 -2.39 -0.02 2.25 16 40 H 0.17 2.25 7.76 -2.91 -0.02 2.23 16 41 H 0.22 0.53 8.06 -2.91 -0.02 0.50 16 42 H 0.14 1.48 8.14 -2.38 -0.02 1.47 16 43 H 0.10 1.08 7.54 -2.38 -0.02 1.07 16 44 H 0.12 0.67 8.14 -2.38 -0.02 0.65 16 45 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 47 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 48 H 0.15 2.97 4.01 -61.61 -0.25 2.73 16 49 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 50 H 0.06 1.50 6.51 -2.39 -0.02 1.49 16 Total: -1.00 -74.26 390.87 2.73 -71.53 By element: Atomic # 1 Polarization: 28.67 SS G_CDS: 0.31 Total: 28.97 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: 7.13 Total: 4.88 kcal Atomic # 7 Polarization: -129.52 SS G_CDS: -6.55 Total: -136.07 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: -0.06 Total: -17.22 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 1.90 Total: 47.91 kcal Total: -74.26 2.73 -71.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753279359.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.483 kcal (2) G-P(sol) polarization free energy of solvation -74.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds