Wall clock time and date at job start Wed Apr 1 2020 03:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46986 * 2 1 4 4 C 1.50694 * 109.47271 * 239.99748 * 2 1 3 5 5 H 1.08001 * 120.00276 * 239.99639 * 4 2 1 6 6 C 1.37885 * 119.99892 * 60.00476 * 4 2 1 7 7 N 1.31517 * 119.99821 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 119.99820 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.47228 * 90.00049 * 8 6 4 10 10 H 1.48499 * 109.46997 * 209.99611 * 8 6 4 11 11 H 1.48499 * 109.47574 * 329.99743 * 8 6 4 12 12 N 1.46901 * 109.46988 * 119.99768 * 2 1 3 13 13 C 1.46904 * 110.99817 * 58.95392 * 12 2 1 14 14 C 1.38581 * 111.00391 * 295.00323 * 12 2 1 15 15 N 1.31223 * 126.47076 * 359.97438 * 14 12 2 16 16 N 1.28526 * 109.85979 * 180.02562 * 15 14 12 17 17 C 1.30296 * 110.05512 * 359.97438 * 16 15 14 18 18 C 1.50698 * 126.34640 * 180.02562 * 17 16 15 19 19 C 1.53005 * 109.46782 * 90.03404 * 18 17 16 20 20 C 1.53001 * 109.47368 * 59.99721 * 19 18 17 21 21 O 1.42900 * 109.46972 * 299.99691 * 19 18 17 22 22 C 1.50693 * 109.47256 * 179.97438 * 19 18 17 23 23 C 1.38233 * 120.00207 * 149.99417 * 22 19 18 24 24 C 1.38234 * 120.00037 * 179.72405 * 23 22 19 25 25 C 1.38234 * 120.00240 * 0.26327 * 24 23 22 26 26 C 1.38238 * 119.99693 * 359.97438 * 25 24 23 27 27 C 1.38234 * 120.00067 * 0.02562 * 26 25 24 28 28 N 1.36458 * 126.47675 * 180.28778 * 14 12 2 29 29 C 1.46493 * 127.13254 * 359.97438 * 28 14 12 30 30 H 1.09000 * 109.47642 * 300.00141 * 1 2 3 31 31 H 1.09001 * 109.47176 * 59.99998 * 1 2 3 32 32 H 1.09004 * 109.46986 * 179.97438 * 1 2 3 33 33 H 0.96993 * 119.99599 * 180.02562 * 7 6 4 34 34 H 1.08994 * 109.47231 * 296.04774 * 13 12 2 35 35 H 1.09001 * 109.47017 * 56.04738 * 13 12 2 36 36 H 1.09000 * 109.46920 * 176.04530 * 13 12 2 37 37 H 1.08992 * 109.47185 * 330.03475 * 18 17 16 38 38 H 1.08999 * 109.47051 * 210.03023 * 18 17 16 39 39 H 1.08998 * 109.47324 * 180.02562 * 20 19 18 40 40 H 1.08998 * 109.46740 * 300.00553 * 20 19 18 41 41 H 1.09007 * 109.46863 * 59.99976 * 20 19 18 42 42 H 0.96697 * 114.00151 * 300.00452 * 21 19 18 43 43 H 1.08002 * 120.00157 * 0.02562 * 23 22 19 44 44 H 1.07999 * 120.00009 * 180.28389 * 24 23 22 45 45 H 1.07997 * 120.00460 * 180.02562 * 25 24 23 46 46 H 1.08001 * 119.99624 * 180.02562 * 26 25 24 47 47 H 1.07999 * 120.00008 * 180.02562 * 27 26 25 48 48 H 1.08997 * 109.47197 * 270.17042 * 29 28 14 49 49 H 1.08999 * 109.47281 * 30.17937 * 29 28 14 50 50 H 1.09006 * 109.46691 * 150.17398 * 29 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3226 -1.1195 -4.0078 9 1 1.3449 -2.1616 -4.4123 10 1 2.4874 -0.1402 -5.1119 11 1 3.6310 -1.7566 -3.7119 12 7 2.0196 -0.6925 1.1995 13 6 1.5282 -2.0761 1.2460 14 6 1.6696 -0.0023 2.3491 15 7 0.9940 1.1210 2.4093 16 7 0.8501 1.4788 3.6353 17 6 1.4201 0.6120 4.4236 18 6 1.4719 0.6720 5.9285 19 6 0.2568 -0.0537 6.5099 20 6 0.2706 -1.5150 6.0569 21 8 -0.9400 0.5766 6.0489 22 6 0.3087 0.0058 8.0148 23 6 -0.8635 0.0089 8.7473 24 6 -0.8157 0.0577 10.1279 25 6 0.4043 0.1088 10.7759 26 6 1.5765 0.1106 10.0432 27 6 1.5287 0.0618 8.6626 28 7 1.9676 -0.3593 3.6320 29 6 2.7157 -1.5401 4.0703 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 0.7083 1.1609 -3.4844 34 1 0.4419 -2.0730 1.3347 35 1 1.8167 -2.5950 0.3319 36 1 1.9616 -2.5868 2.1059 37 1 1.4620 1.7131 6.2511 38 1 2.3847 0.1913 6.2801 39 1 -0.5952 -2.0319 6.4707 40 1 0.2333 -1.5583 4.9685 41 1 1.1836 -1.9958 6.4086 42 1 -1.0163 1.5072 6.3001 43 1 -1.8167 -0.0316 8.2411 44 1 -1.7315 0.0555 10.7004 45 1 0.4417 0.1465 11.8546 46 1 2.5296 0.1501 10.5495 47 1 2.4445 0.0628 8.0901 48 1 2.0256 -2.3684 4.2308 49 1 3.4417 -1.8149 3.3052 50 1 3.2363 -1.3154 5.0013 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772179663.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:57 Heat of formation + Delta-G solvation = 80.868479 kcal Electronic energy + Delta-G solvation = -31069.609111 eV Core-core repulsion = 27099.299192 eV Total energy + Delta-G solvation = -3970.309919 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.48805 -40.15097 -37.64233 -37.15156 -34.76757 -33.26560 -32.62843 -31.23265 -30.78558 -29.27729 -28.72171 -27.88625 -26.76073 -25.15752 -24.97843 -23.62981 -22.76577 -21.72172 -20.93859 -19.93341 -19.37537 -17.93195 -16.81456 -16.57040 -16.18208 -15.95192 -15.56972 -15.35198 -14.95103 -14.78306 -14.59968 -14.52821 -14.06997 -13.78184 -13.53306 -13.26591 -13.11137 -12.98902 -12.76476 -12.59422 -12.35211 -12.29700 -12.12614 -11.78913 -11.48824 -11.41562 -11.33865 -11.08542 -11.02595 -10.91764 -10.72619 -10.50653 -10.27485 -10.15011 -10.06064 -9.72147 -9.63105 -9.23621 -9.12311 -8.89715 -8.85686 -8.39218 -7.29258 -6.02180 -4.09522 0.99013 1.08728 2.28631 2.72164 3.29290 3.36240 3.38798 3.43220 3.48920 4.01635 4.15874 4.35262 4.51283 4.61901 4.66745 4.67888 4.70978 4.74268 4.81986 4.88635 5.08631 5.15461 5.18856 5.27741 5.29043 5.36469 5.51107 5.54450 5.57457 5.65783 5.69335 5.73675 5.88965 5.96936 6.03814 6.13814 6.19931 6.21675 6.27154 6.38623 6.51410 6.66846 6.85413 7.03168 7.13679 7.24592 7.51120 7.56804 7.68248 7.76106 7.99765 8.30162 8.47031 8.92126 9.45646 9.55095 11.04165 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.031012 B = 0.002371 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.645153 B =11808.518678 C =12085.823785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.229 3.771 3 H 0.055 0.945 4 C -0.515 4.515 5 H 0.063 0.937 6 C 0.063 3.937 7 N -0.883 5.883 8 Si 0.900 3.100 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.451 5.451 13 C 0.030 3.970 14 C 0.386 3.614 15 N -0.316 5.316 16 N -0.274 5.274 17 C 0.153 3.847 18 C -0.048 4.048 19 C 0.181 3.819 20 C -0.138 4.138 21 O -0.539 6.539 22 C -0.112 4.112 23 C -0.100 4.100 24 C -0.121 4.121 25 C -0.121 4.121 26 C -0.121 4.121 27 C -0.114 4.114 28 N -0.492 5.492 29 C 0.077 3.923 30 H 0.038 0.962 31 H 0.090 0.910 32 H 0.021 0.979 33 H 0.262 0.738 34 H 0.034 0.966 35 H 0.095 0.905 36 H 0.048 0.952 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.380 0.620 43 H 0.130 0.870 44 H 0.122 0.878 45 H 0.120 0.880 46 H 0.122 0.878 47 H 0.124 0.876 48 H 0.074 0.926 49 H 0.093 0.907 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.990 -5.465 26.342 26.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.125 3.875 3 H 0.073 0.927 4 C -0.553 4.553 5 H 0.081 0.919 6 C -0.140 4.140 7 N -0.521 5.521 8 Si 0.727 3.273 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.174 5.174 13 C -0.117 4.117 14 C 0.030 3.970 15 N -0.160 5.160 16 N -0.113 5.113 17 C -0.114 4.114 18 C -0.087 4.087 19 C 0.139 3.861 20 C -0.195 4.195 21 O -0.344 6.344 22 C -0.113 4.113 23 C -0.118 4.118 24 C -0.139 4.139 25 C -0.139 4.139 26 C -0.139 4.139 27 C -0.132 4.132 28 N -0.190 5.190 29 C -0.067 4.067 30 H 0.057 0.943 31 H 0.109 0.891 32 H 0.040 0.960 33 H 0.072 0.928 34 H 0.053 0.947 35 H 0.113 0.887 36 H 0.066 0.934 37 H 0.117 0.883 38 H 0.105 0.895 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.228 0.772 43 H 0.147 0.853 44 H 0.140 0.860 45 H 0.138 0.862 46 H 0.140 0.860 47 H 0.142 0.858 48 H 0.092 0.908 49 H 0.112 0.888 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.570 -4.745 25.401 25.847 hybrid contribution 0.546 -1.090 -0.147 1.228 sum 1.116 -5.835 25.254 25.943 Atomic orbital electron populations 1.22401 0.99054 0.98940 1.02664 1.19367 0.91258 0.94740 0.82130 0.92746 1.21026 1.31814 1.12964 0.89530 0.91866 1.24904 0.95061 0.95053 0.98937 1.69924 1.36062 1.22496 1.23622 0.86480 0.79117 0.79243 0.82427 1.20724 1.21175 1.19886 1.59313 1.55614 1.03057 0.99466 1.22445 0.98331 0.88147 1.02792 1.23305 0.95055 0.94738 0.83878 1.74863 1.17930 1.12354 1.10861 1.73907 1.17845 1.22858 0.96692 1.23884 1.02667 0.89852 0.95035 1.20663 0.99139 1.03229 0.85720 1.19866 0.84989 0.93882 0.87354 1.21885 1.02474 0.92722 1.02452 1.86616 1.39557 1.28921 1.79349 1.20526 0.93801 1.01094 0.95854 1.21056 0.98431 0.98621 0.93713 1.21186 0.97921 1.00260 0.94538 1.21196 0.92708 1.00096 0.99889 1.21147 0.98371 1.00353 0.94008 1.21123 0.97347 1.00075 0.94632 1.45999 1.44971 1.21715 1.06304 1.22075 0.96618 0.86104 1.01884 0.94304 0.89114 0.96041 0.92757 0.94705 0.88672 0.93375 0.88310 0.89547 0.91543 0.91349 0.91211 0.77224 0.85250 0.86036 0.86197 0.86014 0.85779 0.90763 0.88816 0.90063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.44 8.26 37.16 0.31 -4.13 16 2 C 0.23 5.95 2.03 -68.87 -0.14 5.81 16 3 H 0.05 1.62 7.95 -51.93 -0.41 1.21 16 4 C -0.51 -13.86 7.88 -34.44 -0.27 -14.14 16 5 H 0.06 1.65 6.77 -52.49 -0.36 1.29 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 7 N -0.88 -25.43 11.32 55.43 0.63 -24.80 16 8 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 9 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 12 N -0.45 -9.88 4.80 -176.08 -0.85 -10.73 16 13 C 0.03 0.56 8.60 60.07 0.52 1.08 16 14 C 0.39 8.08 6.75 -318.86 -2.15 5.93 16 15 N -0.32 -7.38 9.32 30.32 0.28 -7.09 16 16 N -0.27 -5.60 12.18 32.99 0.40 -5.20 16 17 C 0.15 2.43 5.98 -154.02 -0.92 1.51 16 18 C -0.05 -0.51 4.14 -27.88 -0.12 -0.62 16 19 C 0.18 1.85 0.91 -91.77 -0.08 1.76 16 20 C -0.14 -1.42 7.37 37.16 0.27 -1.15 16 21 O -0.54 -6.61 11.59 -35.23 -0.41 -7.01 16 22 C -0.11 -0.98 4.81 -104.63 -0.50 -1.48 16 23 C -0.10 -0.86 9.35 -39.58 -0.37 -1.23 16 24 C -0.12 -0.91 10.05 -39.58 -0.40 -1.31 16 25 C -0.12 -0.85 10.05 -39.58 -0.40 -1.24 16 26 C -0.12 -0.85 10.05 -39.58 -0.40 -1.25 16 27 C -0.11 -0.87 9.14 -39.58 -0.36 -1.23 16 28 N -0.49 -7.90 2.73 -121.46 -0.33 -8.23 16 29 C 0.08 0.83 8.03 59.84 0.48 1.31 16 30 H 0.04 1.00 5.88 -51.93 -0.31 0.70 16 31 H 0.09 2.57 6.07 -51.93 -0.32 2.25 16 32 H 0.02 0.52 6.48 -51.93 -0.34 0.18 16 33 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 34 H 0.03 0.67 6.51 -51.93 -0.34 0.33 16 35 H 0.09 1.81 6.41 -51.93 -0.33 1.48 16 36 H 0.05 0.70 5.43 -51.93 -0.28 0.42 16 37 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 38 H 0.09 0.70 5.63 -51.93 -0.29 0.41 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.88 5.76 -51.93 -0.30 0.58 16 41 H 0.07 0.55 7.93 -51.92 -0.41 0.14 16 42 H 0.38 3.71 9.04 45.56 0.41 4.12 16 43 H 0.13 1.11 7.49 -52.49 -0.39 0.72 16 44 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 45 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 46 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 47 H 0.12 0.76 6.16 -52.49 -0.32 0.44 16 48 H 0.07 0.69 6.66 -51.93 -0.35 0.34 16 49 H 0.09 1.04 7.60 -51.93 -0.39 0.65 16 50 H 0.08 0.62 7.25 -51.93 -0.38 0.25 16 LS Contribution 385.28 15.07 5.81 5.81 Total: -1.00 -33.95 385.28 -10.47 -44.42 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -6.35 Total: 5.58 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: -4.63 Total: -8.74 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: 0.13 Total: -56.05 kcal Atomic # 8 Polarization: -6.61 SS G_CDS: -0.41 Total: -7.01 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.95 -10.47 -44.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772179663.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.290 kcal (2) G-P(sol) polarization free energy of solvation -33.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds