Wall clock time and date at job start Wed Apr 1 2020 03:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46986 * 2 1 4 4 C 1.50694 * 109.47271 * 239.99748 * 2 1 3 5 5 H 1.08001 * 120.00276 * 239.99639 * 4 2 1 6 6 C 1.37885 * 119.99892 * 60.00476 * 4 2 1 7 7 N 1.31517 * 119.99821 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 119.99820 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.47228 * 90.00049 * 8 6 4 10 10 H 1.48499 * 109.46997 * 209.99611 * 8 6 4 11 11 H 1.48499 * 109.47574 * 329.99743 * 8 6 4 12 12 N 1.46901 * 109.46988 * 119.99768 * 2 1 3 13 13 C 1.46904 * 110.99817 * 58.95392 * 12 2 1 14 14 C 1.38581 * 111.00391 * 295.00323 * 12 2 1 15 15 N 1.31223 * 126.47076 * 359.97438 * 14 12 2 16 16 N 1.28526 * 109.85979 * 180.02562 * 15 14 12 17 17 C 1.30296 * 110.05512 * 359.97438 * 16 15 14 18 18 C 1.50698 * 126.34640 * 180.02562 * 17 16 15 19 19 C 1.53005 * 109.46782 * 90.03404 * 18 17 16 20 20 C 1.53001 * 109.47368 * 59.99721 * 19 18 17 21 21 O 1.42900 * 109.46972 * 299.99691 * 19 18 17 22 22 C 1.50693 * 109.47256 * 179.97438 * 19 18 17 23 23 C 1.38233 * 120.00207 * 149.99417 * 22 19 18 24 24 C 1.38234 * 120.00037 * 179.72405 * 23 22 19 25 25 C 1.38234 * 120.00240 * 0.26327 * 24 23 22 26 26 C 1.38238 * 119.99693 * 359.97438 * 25 24 23 27 27 C 1.38234 * 120.00067 * 0.02562 * 26 25 24 28 28 N 1.36458 * 126.47675 * 180.28778 * 14 12 2 29 29 C 1.46493 * 127.13254 * 359.97438 * 28 14 12 30 30 H 1.09000 * 109.47642 * 300.00141 * 1 2 3 31 31 H 1.09001 * 109.47176 * 59.99998 * 1 2 3 32 32 H 1.09004 * 109.46986 * 179.97438 * 1 2 3 33 33 H 0.96993 * 119.99599 * 180.02562 * 7 6 4 34 34 H 1.08994 * 109.47231 * 296.04774 * 13 12 2 35 35 H 1.09001 * 109.47017 * 56.04738 * 13 12 2 36 36 H 1.09000 * 109.46920 * 176.04530 * 13 12 2 37 37 H 1.08992 * 109.47185 * 330.03475 * 18 17 16 38 38 H 1.08999 * 109.47051 * 210.03023 * 18 17 16 39 39 H 1.08998 * 109.47324 * 180.02562 * 20 19 18 40 40 H 1.08998 * 109.46740 * 300.00553 * 20 19 18 41 41 H 1.09007 * 109.46863 * 59.99976 * 20 19 18 42 42 H 0.96697 * 114.00151 * 300.00452 * 21 19 18 43 43 H 1.08002 * 120.00157 * 0.02562 * 23 22 19 44 44 H 1.07999 * 120.00009 * 180.28389 * 24 23 22 45 45 H 1.07997 * 120.00460 * 180.02562 * 25 24 23 46 46 H 1.08001 * 119.99624 * 180.02562 * 26 25 24 47 47 H 1.07999 * 120.00008 * 180.02562 * 27 26 25 48 48 H 1.08997 * 109.47197 * 270.17042 * 29 28 14 49 49 H 1.08999 * 109.47281 * 30.17937 * 29 28 14 50 50 H 1.09006 * 109.46691 * 150.17398 * 29 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3226 -1.1195 -4.0078 9 1 1.3449 -2.1616 -4.4123 10 1 2.4874 -0.1402 -5.1119 11 1 3.6310 -1.7566 -3.7119 12 7 2.0196 -0.6925 1.1995 13 6 1.5282 -2.0761 1.2460 14 6 1.6696 -0.0023 2.3491 15 7 0.9940 1.1210 2.4093 16 7 0.8501 1.4788 3.6353 17 6 1.4201 0.6120 4.4236 18 6 1.4719 0.6720 5.9285 19 6 0.2568 -0.0537 6.5099 20 6 0.2706 -1.5150 6.0569 21 8 -0.9400 0.5766 6.0489 22 6 0.3087 0.0058 8.0148 23 6 -0.8635 0.0089 8.7473 24 6 -0.8157 0.0577 10.1279 25 6 0.4043 0.1088 10.7759 26 6 1.5765 0.1106 10.0432 27 6 1.5287 0.0618 8.6626 28 7 1.9676 -0.3593 3.6320 29 6 2.7157 -1.5401 4.0703 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 0.7083 1.1609 -3.4844 34 1 0.4419 -2.0730 1.3347 35 1 1.8167 -2.5950 0.3319 36 1 1.9616 -2.5868 2.1059 37 1 1.4620 1.7131 6.2511 38 1 2.3847 0.1913 6.2801 39 1 -0.5952 -2.0319 6.4707 40 1 0.2333 -1.5583 4.9685 41 1 1.1836 -1.9958 6.4086 42 1 -1.0163 1.5072 6.3001 43 1 -1.8167 -0.0316 8.2411 44 1 -1.7315 0.0555 10.7004 45 1 0.4417 0.1465 11.8546 46 1 2.5296 0.1501 10.5495 47 1 2.4445 0.0628 8.0901 48 1 2.0256 -2.3684 4.2308 49 1 3.4417 -1.8149 3.3052 50 1 3.2363 -1.3154 5.0013 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772179663.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:56 Heat of formation + Delta-G solvation = 59.571168 kcal Electronic energy + Delta-G solvation = -31070.532631 eV Core-core repulsion = 27099.299192 eV Total energy + Delta-G solvation = -3971.233440 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.90110 -40.83092 -39.09100 -38.18889 -36.05092 -34.86024 -33.92501 -31.98066 -31.64957 -30.64604 -30.13376 -29.09166 -27.83073 -27.23936 -26.49935 -24.38957 -23.44576 -23.34337 -21.92662 -21.18013 -20.80381 -18.69129 -18.34902 -17.77878 -17.51943 -17.17128 -17.09089 -16.47459 -16.08725 -15.85872 -15.70588 -15.44751 -15.17873 -15.00943 -14.67062 -14.47424 -14.19072 -14.11178 -13.77982 -13.63505 -13.40058 -13.30981 -13.08737 -13.05833 -12.91646 -12.87441 -12.65496 -12.54533 -12.48054 -12.25061 -12.06561 -12.05994 -11.99288 -11.69853 -11.27675 -11.15606 -10.99280 -10.85182 -10.51705 -10.45967 -9.77561 -9.66117 -8.93618 -8.11770 -6.27122 0.42686 0.54567 0.93709 1.41873 1.45951 1.47674 1.57483 1.99942 2.42633 2.89554 3.05096 3.17470 3.21216 3.35524 3.69756 3.79096 3.87121 3.87234 4.14230 4.17982 4.21422 4.30086 4.30551 4.36693 4.43034 4.50417 4.60431 4.62788 4.67148 4.69814 4.75275 4.80555 4.85071 4.90887 4.99914 5.06136 5.10168 5.11858 5.17696 5.18554 5.21074 5.49128 5.60333 5.61121 5.64189 5.67844 5.69029 5.90283 6.10704 6.14149 6.21677 6.62095 6.78692 6.82582 7.41660 7.99104 8.95081 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.031012 B = 0.002371 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.645153 B =11808.518678 C =12085.823785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.242 3.758 3 H 0.003 0.997 4 C -0.524 4.524 5 H 0.073 0.927 6 C 0.009 3.991 7 N -0.920 5.920 8 Si 0.971 3.029 9 H -0.273 1.273 10 H -0.288 1.288 11 H -0.262 1.262 12 N -0.454 5.454 13 C 0.033 3.967 14 C 0.363 3.637 15 N -0.370 5.370 16 N -0.324 5.324 17 C 0.185 3.815 18 C -0.046 4.046 19 C 0.186 3.814 20 C -0.138 4.138 21 O -0.565 6.565 22 C -0.117 4.117 23 C -0.115 4.115 24 C -0.130 4.130 25 C -0.125 4.125 26 C -0.124 4.124 27 C -0.117 4.117 28 N -0.481 5.481 29 C 0.060 3.940 30 H 0.031 0.969 31 H 0.061 0.939 32 H 0.028 0.972 33 H 0.262 0.738 34 H 0.020 0.980 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.106 0.894 38 H 0.125 0.875 39 H 0.061 0.939 40 H 0.040 0.960 41 H 0.101 0.899 42 H 0.386 0.614 43 H 0.119 0.881 44 H 0.134 0.866 45 H 0.140 0.860 46 H 0.144 0.856 47 H 0.144 0.856 48 H 0.095 0.905 49 H 0.093 0.907 50 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.140 -7.806 29.170 30.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.137 3.863 3 H 0.021 0.979 4 C -0.562 4.562 5 H 0.091 0.909 6 C -0.190 4.190 7 N -0.558 5.558 8 Si 0.796 3.204 9 H -0.198 1.198 10 H -0.214 1.214 11 H -0.186 1.186 12 N -0.177 5.177 13 C -0.113 4.113 14 C 0.005 3.995 15 N -0.214 5.214 16 N -0.162 5.162 17 C -0.084 4.084 18 C -0.086 4.086 19 C 0.144 3.856 20 C -0.195 4.195 21 O -0.372 6.372 22 C -0.118 4.118 23 C -0.133 4.133 24 C -0.147 4.147 25 C -0.143 4.143 26 C -0.142 4.142 27 C -0.134 4.134 28 N -0.177 5.177 29 C -0.081 4.081 30 H 0.050 0.950 31 H 0.080 0.920 32 H 0.047 0.953 33 H 0.071 0.929 34 H 0.039 0.961 35 H 0.108 0.892 36 H 0.111 0.889 37 H 0.125 0.875 38 H 0.143 0.857 39 H 0.080 0.920 40 H 0.059 0.941 41 H 0.120 0.880 42 H 0.235 0.765 43 H 0.137 0.863 44 H 0.152 0.848 45 H 0.158 0.842 46 H 0.162 0.838 47 H 0.162 0.838 48 H 0.114 0.886 49 H 0.112 0.888 50 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.734 -7.111 28.273 29.282 hybrid contribution -0.143 -0.348 -0.788 0.874 sum 2.591 -7.459 27.485 28.597 Atomic orbital electron populations 1.22163 0.99527 0.98645 1.00784 1.18892 0.90634 0.92585 0.84237 0.97914 1.21326 1.31734 1.13121 0.90037 0.90918 1.25833 0.95147 0.95697 1.02299 1.70095 1.37348 1.24144 1.24259 0.85355 0.78996 0.77979 0.78057 1.19825 1.21363 1.18647 1.59178 1.55868 1.04017 0.98656 1.22518 0.97689 0.86629 1.04510 1.23137 0.96266 0.94819 0.85274 1.74696 1.19700 1.14034 1.12935 1.73802 1.20685 1.25336 0.96348 1.24828 0.98967 0.87856 0.96773 1.20985 1.01248 1.04546 0.81773 1.19871 0.83772 0.93478 0.88498 1.21932 1.03974 0.93053 1.00540 1.86595 1.40960 1.29684 1.79944 1.20315 0.94482 1.02476 0.94507 1.21084 0.98230 0.99581 0.94408 1.21393 0.99021 1.00133 0.94198 1.21516 0.92475 0.99162 1.01098 1.21471 0.99350 0.99428 0.93941 1.21342 0.97362 0.99556 0.95184 1.46187 1.44446 1.22833 1.04282 1.22585 0.96949 0.84806 1.03733 0.95046 0.91982 0.95302 0.92850 0.96111 0.89232 0.88944 0.87522 0.85664 0.92022 0.94084 0.88037 0.76465 0.86276 0.84848 0.84245 0.83797 0.83839 0.88635 0.88808 0.85823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -8.30 8.26 71.98 0.59 -7.71 16 2 C 0.24 13.18 2.03 44.17 0.09 13.27 16 3 H 0.00 0.18 7.95 -2.39 -0.02 0.17 16 4 C -0.52 -28.77 7.88 25.60 0.20 -28.57 16 5 H 0.07 3.77 6.77 -2.91 -0.02 3.75 16 6 C 0.01 0.53 5.30 84.66 0.45 0.98 16 7 N -0.92 -55.03 11.32 21.45 0.24 -54.79 16 8 Si 0.97 43.45 29.54 68.60 2.03 45.48 16 9 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 10 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 11 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 12 N -0.45 -20.22 4.80 -710.99 -3.42 -23.64 16 13 C 0.03 1.21 8.60 127.69 1.10 2.30 16 14 C 0.36 15.47 6.75 260.11 1.76 17.23 16 15 N -0.37 -18.13 9.32 -58.00 -0.54 -18.67 16 16 N -0.32 -13.64 12.18 -49.54 -0.60 -14.24 16 17 C 0.18 5.68 5.98 137.64 0.82 6.50 16 18 C -0.05 -0.85 4.14 29.85 0.12 -0.73 16 19 C 0.19 3.42 0.91 -11.54 -0.01 3.41 16 20 C -0.14 -2.50 7.37 71.98 0.53 -1.97 16 21 O -0.56 -13.87 11.59 -148.98 -1.73 -15.59 16 22 C -0.12 -1.76 4.81 -19.87 -0.10 -1.86 16 23 C -0.11 -1.83 9.35 22.27 0.21 -1.63 16 24 C -0.13 -1.70 10.05 22.27 0.22 -1.47 16 25 C -0.12 -1.36 10.05 22.27 0.22 -1.14 16 26 C -0.12 -1.27 10.05 22.27 0.22 -1.04 16 27 C -0.12 -1.32 9.14 22.27 0.20 -1.12 16 28 N -0.48 -14.72 2.73 -538.19 -1.47 -16.19 16 29 C 0.06 1.07 8.03 127.77 1.03 2.10 16 30 H 0.03 1.72 5.88 -2.39 -0.01 1.71 16 31 H 0.06 3.72 6.07 -2.39 -0.01 3.71 16 32 H 0.03 1.46 6.48 -2.39 -0.02 1.45 16 33 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 34 H 0.02 0.79 6.51 -2.39 -0.02 0.78 16 35 H 0.09 3.33 6.41 -2.39 -0.02 3.31 16 36 H 0.09 2.47 5.43 -2.39 -0.01 2.45 16 37 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.13 1.37 5.63 -2.39 -0.01 1.35 16 39 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.04 0.97 5.76 -2.39 -0.01 0.96 16 41 H 0.10 1.14 7.93 -2.38 -0.02 1.12 16 42 H 0.39 7.77 9.04 -74.06 -0.67 7.10 16 43 H 0.12 2.06 7.49 -2.91 -0.02 2.04 16 44 H 0.13 1.32 8.06 -2.91 -0.02 1.29 16 45 H 0.14 0.92 8.06 -2.91 -0.02 0.90 16 46 H 0.14 0.81 8.06 -2.91 -0.02 0.78 16 47 H 0.14 0.99 6.16 -2.91 -0.02 0.97 16 48 H 0.10 1.35 6.66 -2.39 -0.02 1.33 16 49 H 0.09 1.75 7.60 -2.39 -0.02 1.73 16 50 H 0.12 1.17 7.25 -2.38 -0.02 1.16 16 Total: -1.00 -80.02 385.28 2.49 -77.53 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: 0.31 Total: 21.56 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: 7.67 Total: -1.45 kcal Atomic # 7 Polarization: -121.74 SS G_CDS: -5.79 Total: -127.52 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: -1.73 Total: -15.59 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -80.02 2.49 -77.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772179663.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.098 kcal (2) G-P(sol) polarization free energy of solvation -80.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds