Wall clock time and date at job start Wed Apr 1 2020 03:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46900 * 111.00277 * 2 1 4 4 C 1.38268 * 110.99931 * 123.95227 * 2 1 3 5 5 N 1.32424 * 119.82538 * 305.22861 * 4 2 1 6 6 C 1.31850 * 121.77476 * 179.97438 * 5 4 2 7 7 C 1.38374 * 121.21889 * 0.02562 * 6 5 4 8 8 C 1.38338 * 119.50662 * 359.68143 * 7 6 5 9 9 C 1.39980 * 118.36765 * 0.58512 * 8 7 6 10 10 C 1.47422 * 120.60834 * 179.71356 * 9 8 7 11 11 O 1.21610 * 119.99601 * 234.58962 * 10 9 8 12 12 N 1.34771 * 120.00242 * 54.58707 * 10 9 8 13 13 C 1.46943 * 120.44018 * 356.27962 * 12 10 9 14 14 C 1.53596 * 108.53127 * 125.77453 * 13 12 10 15 15 H 1.08998 * 110.59900 * 172.15832 * 14 13 12 16 16 C 1.53365 * 108.69220 * 294.35986 * 14 13 12 17 17 C 1.53011 * 109.27311 * 60.29791 * 16 14 13 18 18 C 1.53009 * 109.80019 * 60.56493 * 17 16 14 19 19 C 1.53372 * 109.25348 * 299.42743 * 18 17 16 20 20 H 1.09004 * 111.07911 * 177.82928 * 19 18 17 21 21 C 1.46948 * 120.44156 * 176.29768 * 12 10 9 22 22 N 1.47568 * 107.76499 * 51.14553 * 14 13 12 23 23 C 1.36943 * 121.61454 * 120.46196 * 22 14 13 24 24 H 1.08000 * 120.00160 * 214.81426 * 23 22 14 25 25 C 1.38809 * 119.99989 * 34.80095 * 23 22 14 26 26 N 1.31627 * 120.00015 * 5.50927 * 25 23 22 27 27 Si 1.86796 * 120.00396 * 185.50079 * 25 23 22 28 28 H 1.48507 * 109.46993 * 60.00232 * 27 25 23 29 29 H 1.48501 * 109.47485 * 180.02562 * 27 25 23 30 30 H 1.48506 * 109.47255 * 300.00953 * 27 25 23 31 31 H 1.09004 * 109.47380 * 296.04973 * 1 2 3 32 32 H 1.09004 * 109.46975 * 56.04432 * 1 2 3 33 33 H 1.08999 * 109.47713 * 176.04571 * 1 2 3 34 34 H 1.09002 * 109.47138 * 188.92680 * 3 2 1 35 35 H 1.09006 * 109.46908 * 308.92221 * 3 2 1 36 36 H 1.08998 * 109.47304 * 68.92035 * 3 2 1 37 37 H 1.08002 * 119.39073 * 179.97438 * 6 5 4 38 38 H 1.07998 * 120.24894 * 179.97438 * 7 6 5 39 39 H 1.07998 * 120.81395 * 180.31417 * 8 7 6 40 40 H 1.09002 * 109.62585 * 245.48345 * 13 12 10 41 41 H 1.08998 * 109.62824 * 6.06438 * 13 12 10 42 42 H 1.08998 * 109.50809 * 180.24040 * 16 14 13 43 43 H 1.09000 * 109.50186 * 300.32124 * 16 14 13 44 44 H 1.09000 * 109.41536 * 180.66504 * 17 16 14 45 45 H 1.08997 * 109.41733 * 300.53095 * 17 16 14 46 46 H 1.09000 * 109.51016 * 179.49180 * 18 17 16 47 47 H 1.09000 * 109.50428 * 59.35852 * 18 17 16 48 48 H 1.09000 * 109.62221 * 114.49197 * 21 12 10 49 49 H 1.09001 * 109.77918 * 354.02328 * 21 12 10 50 50 H 0.97000 * 120.00022 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9644 -0.7209 1.0708 5 7 1.5818 -0.4186 2.3019 6 6 2.0295 -1.0807 3.3505 7 6 2.9245 -2.1266 3.2097 8 6 3.3541 -2.4903 1.9460 9 6 2.8713 -1.7708 0.8467 10 6 3.3013 -2.1122 -0.5214 11 8 3.7860 -1.2571 -1.2376 12 7 3.1574 -3.3718 -0.9785 13 6 2.6490 -4.4306 -0.0955 14 6 1.4431 -5.0961 -0.7754 15 1 1.1242 -5.9753 -0.2156 16 6 0.3096 -4.0684 -0.8813 17 6 0.7830 -2.8789 -1.7193 18 6 1.1577 -3.3519 -3.1254 19 6 2.2948 -4.3765 -3.0281 20 1 2.5601 -4.7625 -4.0124 21 6 3.5072 -3.7048 -2.3663 22 7 1.8480 -5.4705 -2.1442 23 6 1.8112 -6.7704 -2.5734 24 1 2.5590 -7.1327 -3.2633 25 6 0.8130 -7.6225 -2.1215 26 7 -0.1596 -7.1554 -1.3676 27 14 0.8496 -9.4321 -2.5836 28 1 2.1028 -10.0471 -2.0768 29 1 -0.3195 -10.1209 -1.9803 30 1 0.7947 -9.5669 -4.0615 31 1 -0.3634 0.4513 0.9233 32 1 -0.3633 0.5740 -0.8525 33 1 -0.3634 -1.0252 -0.0709 34 1 3.0735 1.3467 -0.1595 35 1 1.5229 1.9420 -0.7996 36 1 1.7806 1.8431 0.9589 37 1 1.6920 -0.8012 4.3376 38 1 3.2814 -2.6581 4.0795 39 1 4.0484 -3.3066 1.8114 40 1 3.4294 -5.1726 0.0735 41 1 2.3398 -3.9971 0.8556 42 1 -0.5555 -4.5286 -1.3587 43 1 0.0352 -3.7253 0.1162 44 1 -0.0170 -2.1416 -1.7862 45 1 1.6544 -2.4263 -1.2461 46 1 1.4855 -2.4998 -3.7208 47 1 0.2906 -3.8142 -3.5970 48 1 4.3554 -4.3893 -2.3759 49 1 3.7642 -2.7958 -2.9102 50 1 -0.8574 -7.7508 -1.0521 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040001633.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:29 Heat of formation + Delta-G solvation = 80.770496 kcal Electronic energy + Delta-G solvation = -33519.764570 eV Core-core repulsion = 29549.450402 eV Total energy + Delta-G solvation = -3970.314168 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.22553 -39.77754 -37.46626 -36.90750 -33.97275 -33.02039 -32.38855 -31.62288 -30.59098 -30.27502 -27.56187 -26.93455 -25.65965 -24.98346 -24.48398 -23.29504 -21.78483 -21.38836 -21.06086 -19.72213 -18.26938 -17.49566 -17.08349 -16.83937 -16.09192 -15.65838 -15.20182 -15.02311 -14.66054 -14.63020 -14.00781 -13.86467 -13.73607 -13.47296 -13.34355 -13.22021 -12.93266 -12.76727 -12.53137 -12.36261 -12.21766 -11.98895 -11.92772 -11.81470 -11.52935 -11.32025 -11.08344 -10.89383 -10.71008 -10.29101 -10.19722 -10.03804 -10.00420 -9.90720 -9.80029 -9.56289 -9.31318 -9.21712 -8.99343 -8.52667 -8.48494 -7.79146 -6.49787 -5.83100 -3.36422 0.80027 1.08324 3.00734 3.33993 3.38194 3.39946 3.41533 3.65041 3.72798 4.36765 4.42847 4.72817 4.77177 4.99271 5.04842 5.21962 5.33269 5.33797 5.39252 5.42451 5.55384 5.65871 5.77592 5.81460 5.84499 5.89786 5.93395 5.93901 5.96252 5.99972 6.05759 6.07338 6.22438 6.30432 6.33033 6.46705 6.53469 6.56847 6.78427 6.81825 6.84345 6.96992 7.12028 7.17467 7.21011 7.26272 7.54351 7.64081 7.72928 7.77202 7.95028 8.42440 8.58746 9.15099 9.73365 10.39506 11.22582 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016193 B = 0.004197 C = 0.003973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.691733 B = 6670.124036 C = 7046.450403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.484 5.484 3 C 0.036 3.964 4 C 0.338 3.662 5 N -0.515 5.515 6 C 0.123 3.877 7 C -0.182 4.182 8 C -0.043 4.043 9 C -0.141 4.141 10 C 0.574 3.426 11 O -0.534 6.534 12 N -0.585 5.585 13 C 0.079 3.921 14 C 0.180 3.820 15 H 0.116 0.884 16 C -0.110 4.110 17 C -0.137 4.137 18 C -0.119 4.119 19 C 0.152 3.848 20 H 0.077 0.923 21 C 0.104 3.896 22 N -0.578 5.578 23 C -0.251 4.251 24 H 0.064 0.936 25 C 0.011 3.989 26 N -0.900 5.900 27 Si 0.904 3.096 28 H -0.284 1.284 29 H -0.291 1.291 30 H -0.283 1.283 31 H 0.041 0.959 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.035 0.965 37 H 0.157 0.843 38 H 0.141 0.859 39 H 0.143 0.857 40 H 0.063 0.937 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.026 0.974 44 H 0.030 0.970 45 H 0.089 0.911 46 H 0.041 0.959 47 H 0.054 0.946 48 H 0.061 0.939 49 H 0.082 0.918 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.150 11.303 8.282 14.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.207 5.207 3 C -0.110 4.110 4 C 0.109 3.891 5 N -0.227 5.227 6 C -0.036 4.036 7 C -0.202 4.202 8 C -0.069 4.069 9 C -0.147 4.147 10 C 0.362 3.638 11 O -0.412 6.412 12 N -0.317 5.317 13 C -0.045 4.045 14 C 0.073 3.927 15 H 0.134 0.866 16 C -0.149 4.149 17 C -0.175 4.175 18 C -0.159 4.159 19 C 0.044 3.956 20 H 0.095 0.905 21 C -0.020 4.020 22 N -0.299 5.299 23 C -0.381 4.381 24 H 0.081 0.919 25 C -0.188 4.188 26 N -0.543 5.543 27 Si 0.734 3.266 28 H -0.210 1.210 29 H -0.217 1.217 30 H -0.209 1.209 31 H 0.060 0.940 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.054 0.946 37 H 0.174 0.826 38 H 0.159 0.841 39 H 0.161 0.839 40 H 0.081 0.919 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.045 0.955 44 H 0.048 0.952 45 H 0.107 0.893 46 H 0.059 0.941 47 H 0.073 0.927 48 H 0.079 0.921 49 H 0.100 0.900 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.824 12.078 7.598 14.772 hybrid contribution -0.010 -1.417 0.459 1.490 sum 3.814 10.661 8.057 13.897 Atomic orbital electron populations 1.22472 0.85081 1.03244 1.01173 1.59795 1.09349 1.15097 1.36433 1.22359 1.01444 0.86486 1.00724 1.19637 0.91023 0.91122 0.87314 1.67781 1.25996 1.29434 0.99470 1.22665 0.92499 0.91287 0.97142 1.22034 1.00341 0.99789 0.98003 1.21779 0.96841 0.96771 0.91545 1.20720 1.00842 0.97840 0.95328 1.17453 0.78247 0.82404 0.85659 1.90745 1.45027 1.47828 1.57585 1.48056 1.62793 1.07873 1.12984 1.22881 0.99412 0.89303 0.92951 1.21123 0.88581 0.96161 0.86872 0.86623 1.21778 1.00540 0.95672 0.96898 1.22159 1.01373 0.97366 0.96617 1.21881 0.99493 0.97557 0.96928 1.21262 0.91395 0.88997 0.93973 0.90505 1.22227 0.98536 0.99958 0.81257 1.44289 1.76737 1.01948 1.06962 1.19070 1.07008 0.85749 1.26253 0.91872 1.25244 0.94982 0.98719 0.99898 1.69858 1.12699 1.34175 1.37587 0.86366 0.76933 0.85007 0.78329 1.21021 1.21675 1.20921 0.94049 0.90806 0.90832 0.90842 0.90745 0.94620 0.82591 0.84095 0.83915 0.91886 0.91200 0.90977 0.95495 0.95154 0.89328 0.94066 0.92711 0.92117 0.89975 0.93501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.23 60.06 0.55 0.93 16 2 N -0.48 -7.35 4.04 -188.74 -0.76 -8.11 16 3 C 0.04 0.48 9.57 60.06 0.57 1.05 16 4 C 0.34 5.20 5.35 -155.18 -0.83 4.37 16 5 N -0.51 -7.14 9.42 -12.20 -0.11 -7.26 16 6 C 0.12 1.35 11.16 -17.49 -0.20 1.16 16 7 C -0.18 -1.86 10.09 -39.49 -0.40 -2.26 16 8 C -0.04 -0.54 7.57 -38.89 -0.29 -0.83 16 9 C -0.14 -2.21 4.72 -104.64 -0.49 -2.70 16 10 C 0.57 10.32 4.24 -12.52 -0.05 10.27 16 11 O -0.53 -10.84 16.16 5.27 0.09 -10.75 16 12 N -0.58 -10.53 1.65 -173.52 -0.29 -10.82 16 13 C 0.08 1.41 5.05 -3.49 -0.02 1.40 16 14 C 0.18 3.89 2.61 -66.85 -0.17 3.72 16 15 H 0.12 2.85 5.99 -51.93 -0.31 2.54 16 16 C -0.11 -2.32 5.51 -26.54 -0.15 -2.47 16 17 C -0.14 -2.69 5.21 -26.72 -0.14 -2.83 16 18 C -0.12 -2.40 5.59 -26.53 -0.15 -2.55 16 19 C 0.15 3.09 3.62 -66.85 -0.24 2.85 16 20 H 0.08 1.54 8.01 -51.93 -0.42 1.13 16 21 C 0.10 1.92 5.87 -3.49 -0.02 1.90 16 22 N -0.58 -13.34 2.52 -155.43 -0.39 -13.73 16 23 C -0.25 -6.41 9.70 -15.06 -0.15 -6.55 16 24 H 0.06 1.60 7.83 -52.49 -0.41 1.19 16 25 C 0.01 0.28 5.21 -17.43 -0.09 0.19 16 26 N -0.90 -24.07 10.53 55.49 0.58 -23.48 16 27 Si 0.90 20.66 29.56 -169.99 -5.02 15.63 16 28 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 29 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 30 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 31 H 0.04 0.54 7.74 -51.93 -0.40 0.14 16 32 H 0.07 0.89 8.07 -51.93 -0.42 0.47 16 33 H 0.07 1.12 6.73 -51.93 -0.35 0.77 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.07 0.84 8.04 -51.93 -0.42 0.42 16 36 H 0.04 0.44 7.91 -51.93 -0.41 0.03 16 37 H 0.16 1.19 8.06 -52.49 -0.42 0.77 16 38 H 0.14 0.98 8.06 -52.49 -0.42 0.55 16 39 H 0.14 1.60 7.47 -52.49 -0.39 1.20 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.07 1.14 4.73 -51.93 -0.25 0.89 16 42 H 0.07 1.76 7.78 -51.93 -0.40 1.36 16 43 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.03 0.58 6.95 -51.93 -0.36 0.22 16 45 H 0.09 1.68 2.33 -52.47 -0.12 1.56 16 46 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 48 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 49 H 0.08 1.51 7.01 -51.93 -0.36 1.14 16 50 H 0.25 6.72 8.31 -40.82 -0.34 6.38 16 LS Contribution 375.38 15.07 5.66 5.66 Total: -1.00 -29.71 375.38 -10.06 -39.76 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -7.54 Total: 5.46 kcal Atomic # 6 Polarization: 9.90 SS G_CDS: -2.26 Total: 7.63 kcal Atomic # 7 Polarization: -62.43 SS G_CDS: -0.97 Total: -63.40 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.09 Total: -10.75 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -29.71 -10.06 -39.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040001633.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.535 kcal (2) G-P(sol) polarization free energy of solvation -29.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds