Wall clock time and date at job start Wed Apr 1 2020 02:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42906 * 114.00384 * 2 1 4 4 C 1.53003 * 109.47051 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.46388 * 180.02562 * 4 3 2 6 6 N 1.46504 * 109.46788 * 180.02562 * 5 4 3 7 7 N 1.40085 * 126.03686 * 270.02554 * 6 5 4 8 8 C 1.30844 * 108.20503 * 179.97438 * 7 6 5 9 9 C 1.39867 * 108.20030 * 359.97438 * 8 7 6 10 10 C 1.34950 * 126.03905 * 90.00083 * 6 5 4 11 11 C 1.50702 * 126.12406 * 359.75246 * 10 6 5 12 12 N 1.46898 * 109.47341 * 275.00387 * 11 10 6 13 13 C 1.46901 * 111.00088 * 293.95503 * 12 11 10 14 14 C 1.50700 * 109.47258 * 295.18127 * 13 12 11 15 15 H 1.08003 * 119.99807 * 355.94903 * 14 13 12 16 16 C 1.37871 * 120.00373 * 175.94809 * 14 13 12 17 17 N 1.31515 * 120.00357 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 119.99869 * 0.02562 * 16 14 13 19 19 H 1.48503 * 109.47230 * 89.99988 * 18 16 14 20 20 H 1.48509 * 109.47087 * 209.99986 * 18 16 14 21 21 H 1.48498 * 109.47301 * 329.99796 * 18 16 14 22 22 C 1.46895 * 111.00348 * 170.00076 * 12 11 10 23 23 C 1.50703 * 109.47498 * 195.23869 * 22 12 11 24 24 C 1.38230 * 119.61584 * 94.69816 * 23 22 12 25 25 C 1.38629 * 119.15739 * 179.75956 * 24 23 22 26 26 C 1.38669 * 118.42137 * 0.49827 * 25 24 23 27 27 C 1.38183 * 119.16200 * 359.73973 * 26 25 24 28 28 N 1.31847 * 119.61744 * 274.96673 * 23 22 12 29 29 H 1.08997 * 109.47616 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46963 * 299.99734 * 1 2 3 31 31 H 1.08997 * 109.47113 * 59.99380 * 1 2 3 32 32 H 1.08999 * 109.46394 * 60.00444 * 3 2 1 33 33 H 1.08998 * 109.46676 * 300.00380 * 3 2 1 34 34 H 1.09000 * 109.47106 * 60.00355 * 4 3 2 35 35 H 1.08998 * 109.47146 * 300.00302 * 4 3 2 36 36 H 1.09000 * 109.47488 * 60.00245 * 5 4 3 37 37 H 1.08998 * 109.47443 * 299.99776 * 5 4 3 38 38 H 1.07999 * 125.89890 * 179.97438 * 8 7 6 39 39 H 1.08004 * 126.03883 * 180.02562 * 9 8 7 40 40 H 1.09002 * 109.47502 * 35.00499 * 11 10 6 41 41 H 1.09002 * 109.47338 * 155.00271 * 11 10 6 42 42 H 1.08996 * 109.47324 * 55.18130 * 13 12 11 43 43 H 1.09001 * 109.47372 * 175.17845 * 13 12 11 44 44 H 0.97001 * 120.00633 * 179.97438 * 17 16 14 45 45 H 1.09002 * 109.47326 * 315.24069 * 22 12 11 46 46 H 1.09008 * 109.47443 * 75.23635 * 22 12 11 47 47 H 1.08001 * 120.42004 * 359.97349 * 24 23 22 48 48 H 1.08000 * 120.78549 * 180.26126 * 25 24 23 49 49 H 1.07994 * 120.42016 * 179.71107 * 26 25 24 50 50 H 1.08003 * 119.61591 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1845 -0.0006 5 6 4.1578 2.5823 0.0000 6 7 5.6182 2.4666 -0.0012 7 7 6.4406 2.4001 1.1308 8 6 7.6820 2.3017 0.7291 9 6 7.6898 2.3017 -0.6695 10 6 6.4089 2.4048 -1.0931 11 6 5.9472 2.4372 -2.5273 12 7 5.5784 1.0807 -2.9538 13 6 6.7542 0.2007 -2.9850 14 6 7.7172 0.6861 -4.0377 15 1 7.4511 1.5208 -4.6692 16 6 8.9378 0.0646 -4.1946 17 7 9.7784 0.4885 -5.1130 18 14 9.3977 -1.3797 -3.1028 19 1 8.9514 -2.6443 -3.7407 20 1 10.8710 -1.4114 -2.9184 21 1 8.7366 -1.2316 -1.7814 22 6 4.9037 1.1042 -4.2584 23 6 4.2161 -0.2163 -4.4923 24 6 2.8806 -0.3584 -4.1652 25 6 2.2562 -1.5758 -4.3889 26 6 3.0044 -2.6124 -4.9261 27 6 4.3367 -2.3974 -5.2234 28 7 4.8966 -1.2242 -5.0016 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.6887 1.8463 0.8901 33 1 1.6886 1.8464 -0.8900 34 1 3.8568 0.6438 -0.8909 35 1 3.8575 0.6434 0.8891 36 1 3.8365 3.1227 0.8904 37 1 3.8358 3.1238 -0.8895 38 1 8.5505 2.2323 1.3673 39 1 8.5639 2.2322 -1.3001 40 1 5.0816 3.0937 -2.6157 41 1 6.7524 2.8106 -3.1600 42 1 7.2437 0.2136 -2.0112 43 1 6.4407 -0.8164 -3.2205 44 1 10.6373 0.0515 -5.2232 45 1 4.1651 1.9057 -4.2712 46 1 5.6390 1.2752 -5.0448 47 1 2.3297 0.4694 -3.7438 48 1 1.2129 -1.7146 -4.1471 49 1 2.5518 -3.5756 -5.1093 50 1 4.9264 -3.1998 -5.6416 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282885020.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:46:31 Heat of formation + Delta-G solvation = 83.253564 kcal Electronic energy + Delta-G solvation = -31473.032129 eV Core-core repulsion = 27502.825635 eV Total energy + Delta-G solvation = -3970.206494 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.81544 -39.79225 -38.09476 -36.82204 -34.61478 -32.38313 -32.18328 -31.73613 -30.68945 -29.81262 -27.80232 -27.04648 -26.23702 -25.02301 -23.98585 -23.08867 -22.11044 -21.86569 -20.57574 -20.13742 -18.91653 -17.12093 -16.64253 -16.38672 -16.31345 -16.02978 -15.80365 -15.32087 -15.09955 -14.98980 -14.62111 -14.25829 -14.10311 -13.94632 -13.61860 -13.12733 -13.10024 -12.93865 -12.81075 -12.37340 -12.19204 -12.13490 -12.09225 -11.87926 -11.60504 -11.22094 -11.11544 -11.07352 -11.00232 -10.89628 -10.77735 -10.30062 -10.15968 -9.82330 -9.80120 -9.52673 -9.43551 -8.88593 -8.83127 -8.63346 -8.45381 -7.97091 -7.30781 -5.98729 -3.95231 1.46676 1.66555 2.30363 2.85434 3.36368 3.38792 3.45265 3.51712 3.67527 4.16561 4.52623 4.69758 4.71961 4.91511 4.98382 5.02000 5.08432 5.12633 5.16000 5.16584 5.17764 5.27426 5.31030 5.36546 5.37700 5.38619 5.46472 5.47785 5.50407 5.65646 5.79944 5.96496 5.98333 6.04584 6.21400 6.28848 6.35296 6.37221 6.42992 6.47031 6.66350 6.80164 6.95233 7.01201 7.07231 7.19694 7.28460 7.49691 7.61393 7.94098 7.99143 8.19668 8.51644 8.55636 9.00139 9.66088 11.14333 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.007462 B = 0.005653 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3751.244815 B = 4951.935724 C = 7698.744805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.386 6.386 3 C 0.070 3.930 4 C -0.140 4.140 5 C 0.148 3.852 6 N -0.366 5.366 7 N -0.312 5.312 8 C 0.041 3.959 9 C -0.256 4.256 10 C 0.115 3.885 11 C 0.117 3.883 12 N -0.522 5.522 13 C 0.150 3.850 14 C -0.529 4.529 15 H 0.073 0.927 16 C 0.080 3.920 17 N -0.902 5.902 18 Si 0.870 3.130 19 H -0.278 1.278 20 H -0.290 1.290 21 H -0.264 1.264 22 C 0.099 3.901 23 C 0.157 3.843 24 C -0.160 4.160 25 C -0.082 4.082 26 C -0.187 4.187 27 C 0.096 3.904 28 N -0.450 5.450 29 H 0.084 0.916 30 H 0.038 0.962 31 H 0.040 0.960 32 H 0.046 0.954 33 H 0.050 0.950 34 H 0.100 0.900 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.176 0.824 39 H 0.151 0.849 40 H 0.065 0.935 41 H 0.080 0.920 42 H 0.035 0.965 43 H 0.034 0.966 44 H 0.261 0.739 45 H 0.068 0.932 46 H 0.079 0.921 47 H 0.126 0.874 48 H 0.125 0.875 49 H 0.125 0.875 50 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.189 1.886 6.436 19.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.305 6.305 3 C -0.008 4.008 4 C -0.179 4.179 5 C 0.025 3.975 6 N -0.150 5.150 7 N -0.133 5.133 8 C -0.145 4.145 9 C -0.285 4.285 10 C -0.012 4.012 11 C -0.012 4.012 12 N -0.246 5.246 13 C 0.024 3.976 14 C -0.568 4.568 15 H 0.091 0.909 16 C -0.122 4.122 17 N -0.541 5.541 18 Si 0.697 3.303 19 H -0.204 1.204 20 H -0.216 1.216 21 H -0.189 1.189 22 C -0.029 4.029 23 C 0.019 3.981 24 C -0.181 4.181 25 C -0.108 4.108 26 C -0.208 4.208 27 C -0.061 4.061 28 N -0.159 5.159 29 H 0.102 0.898 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.118 0.882 35 H 0.092 0.908 36 H 0.104 0.896 37 H 0.107 0.893 38 H 0.193 0.807 39 H 0.169 0.831 40 H 0.083 0.917 41 H 0.098 0.902 42 H 0.053 0.947 43 H 0.052 0.948 44 H 0.070 0.930 45 H 0.086 0.914 46 H 0.097 0.903 47 H 0.144 0.856 48 H 0.143 0.857 49 H 0.143 0.857 50 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -18.263 1.711 7.518 19.824 hybrid contribution 0.405 -0.729 -0.547 0.998 sum -17.858 0.982 6.971 19.195 Atomic orbital electron populations 1.22719 0.81295 1.02652 0.99762 1.87935 1.19380 1.27821 1.95348 1.22368 0.93730 0.84793 0.99866 1.21942 0.92739 0.97391 1.05814 1.21279 0.75514 0.97312 1.03360 1.48374 1.05692 1.57384 1.03516 1.77215 1.01914 1.25890 1.08310 1.23733 0.95004 1.00379 0.95339 1.21411 0.97339 1.15207 0.94557 1.20923 0.90795 0.99553 0.89920 1.20539 1.00080 0.91949 0.88659 1.62506 1.28547 1.08202 1.25392 1.20315 0.87050 0.92966 0.97289 1.21406 1.00234 1.17290 1.17843 0.90929 1.24769 0.96273 0.96391 0.94758 1.69912 1.08943 1.41665 1.33571 0.86938 0.77283 0.83895 0.82136 1.20433 1.21631 1.18862 1.20915 0.97411 0.90891 0.93721 1.21197 0.90117 0.94867 0.91939 1.21866 0.96194 0.98337 1.01692 1.21419 0.99711 0.93071 0.96564 1.22039 0.96218 0.99859 1.02655 1.22803 0.92329 0.94959 0.96033 1.67738 1.38184 0.99506 1.10432 0.89764 0.94304 0.94104 0.93569 0.93139 0.88193 0.90810 0.89636 0.89298 0.80694 0.83128 0.91707 0.90223 0.94730 0.94843 0.92950 0.91380 0.90300 0.85604 0.85736 0.85668 0.83425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.39 -4.72 10.70 -35.23 -0.38 -5.09 16 3 C 0.07 0.72 5.94 37.16 0.22 0.95 16 4 C -0.14 -1.83 5.91 -26.73 -0.16 -1.99 16 5 C 0.15 1.82 6.24 -4.04 -0.03 1.80 16 6 N -0.37 -6.00 3.61 -57.14 -0.21 -6.21 16 7 N -0.31 -5.50 12.58 30.62 0.39 -5.12 16 8 C 0.04 0.70 12.03 -17.36 -0.21 0.49 16 9 C -0.26 -4.82 9.54 -40.02 -0.38 -5.20 16 10 C 0.12 2.06 5.69 -82.26 -0.47 1.59 16 11 C 0.12 2.02 4.97 -4.98 -0.02 2.00 16 12 N -0.52 -9.86 4.53 -238.96 -1.08 -10.95 16 13 C 0.15 3.51 3.80 -4.98 -0.02 3.49 16 14 C -0.53 -13.99 7.92 -34.44 -0.27 -14.26 16 15 H 0.07 2.06 6.18 -52.48 -0.32 1.73 16 16 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 17 N -0.90 -27.08 13.96 55.43 0.77 -26.30 16 18 Si 0.87 22.07 27.55 -169.99 -4.68 17.38 16 19 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 20 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 21 H -0.26 -6.62 6.43 56.52 0.36 -6.25 16 22 C 0.10 1.75 5.10 -4.98 -0.03 1.72 16 23 C 0.16 2.76 5.85 -82.59 -0.48 2.28 16 24 C -0.16 -2.29 9.72 -39.44 -0.38 -2.67 16 25 C -0.08 -1.04 10.18 -39.28 -0.40 -1.44 16 26 C -0.19 -2.48 10.11 -39.44 -0.40 -2.88 16 27 C 0.10 1.56 11.18 -17.55 -0.20 1.36 16 28 N -0.45 -8.83 9.00 -9.47 -0.09 -8.92 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.10 1.58 8.02 -51.93 -0.42 1.17 16 35 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.09 0.92 7.15 -51.93 -0.37 0.55 16 38 H 0.18 2.42 8.06 -52.49 -0.42 2.00 16 39 H 0.15 3.02 8.06 -52.48 -0.42 2.59 16 40 H 0.06 0.91 6.97 -51.93 -0.36 0.54 16 41 H 0.08 1.55 6.71 -51.93 -0.35 1.20 16 42 H 0.03 0.87 5.04 -51.93 -0.26 0.61 16 43 H 0.03 0.85 6.21 -51.93 -0.32 0.53 16 44 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 45 H 0.07 0.96 7.73 -51.93 -0.40 0.56 16 46 H 0.08 1.65 6.04 -51.92 -0.31 1.34 16 47 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 48 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 49 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 50 H 0.15 2.11 8.06 -52.48 -0.42 1.68 16 LS Contribution 406.93 15.07 6.13 6.13 Total: -1.00 -33.59 406.93 -9.14 -42.74 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -7.79 Total: 5.55 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: -2.21 Total: -9.21 kcal Atomic # 7 Polarization: -57.28 SS G_CDS: -0.22 Total: -57.49 kcal Atomic # 8 Polarization: -4.72 SS G_CDS: -0.38 Total: -5.09 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.68 Total: 17.38 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.59 -9.14 -42.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282885020.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.990 kcal (2) G-P(sol) polarization free energy of solvation -33.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds