Wall clock time and date at job start Wed Apr 1 2020 02:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42906 * 114.00384 * 2 1 4 4 C 1.53003 * 109.47051 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.46388 * 180.02562 * 4 3 2 6 6 N 1.46504 * 109.46788 * 180.02562 * 5 4 3 7 7 N 1.40085 * 126.03686 * 270.02554 * 6 5 4 8 8 C 1.30844 * 108.20503 * 179.97438 * 7 6 5 9 9 C 1.39867 * 108.20030 * 359.97438 * 8 7 6 10 10 C 1.34950 * 126.03905 * 90.00083 * 6 5 4 11 11 C 1.50702 * 126.12406 * 359.75246 * 10 6 5 12 12 N 1.46898 * 109.47341 * 275.00387 * 11 10 6 13 13 C 1.46901 * 111.00088 * 293.95503 * 12 11 10 14 14 C 1.50700 * 109.47258 * 295.18127 * 13 12 11 15 15 H 1.08003 * 119.99807 * 355.94903 * 14 13 12 16 16 C 1.37871 * 120.00373 * 175.94809 * 14 13 12 17 17 N 1.31515 * 120.00357 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 119.99869 * 0.02562 * 16 14 13 19 19 H 1.48503 * 109.47230 * 89.99988 * 18 16 14 20 20 H 1.48509 * 109.47087 * 209.99986 * 18 16 14 21 21 H 1.48498 * 109.47301 * 329.99796 * 18 16 14 22 22 C 1.46895 * 111.00348 * 170.00076 * 12 11 10 23 23 C 1.50703 * 109.47498 * 195.23869 * 22 12 11 24 24 C 1.38230 * 119.61584 * 94.69816 * 23 22 12 25 25 C 1.38629 * 119.15739 * 179.75956 * 24 23 22 26 26 C 1.38669 * 118.42137 * 0.49827 * 25 24 23 27 27 C 1.38183 * 119.16200 * 359.73973 * 26 25 24 28 28 N 1.31847 * 119.61744 * 274.96673 * 23 22 12 29 29 H 1.08997 * 109.47616 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46963 * 299.99734 * 1 2 3 31 31 H 1.08997 * 109.47113 * 59.99380 * 1 2 3 32 32 H 1.08999 * 109.46394 * 60.00444 * 3 2 1 33 33 H 1.08998 * 109.46676 * 300.00380 * 3 2 1 34 34 H 1.09000 * 109.47106 * 60.00355 * 4 3 2 35 35 H 1.08998 * 109.47146 * 300.00302 * 4 3 2 36 36 H 1.09000 * 109.47488 * 60.00245 * 5 4 3 37 37 H 1.08998 * 109.47443 * 299.99776 * 5 4 3 38 38 H 1.07999 * 125.89890 * 179.97438 * 8 7 6 39 39 H 1.08004 * 126.03883 * 180.02562 * 9 8 7 40 40 H 1.09002 * 109.47502 * 35.00499 * 11 10 6 41 41 H 1.09002 * 109.47338 * 155.00271 * 11 10 6 42 42 H 1.08996 * 109.47324 * 55.18130 * 13 12 11 43 43 H 1.09001 * 109.47372 * 175.17845 * 13 12 11 44 44 H 0.97001 * 120.00633 * 179.97438 * 17 16 14 45 45 H 1.09002 * 109.47326 * 315.24069 * 22 12 11 46 46 H 1.09008 * 109.47443 * 75.23635 * 22 12 11 47 47 H 1.08001 * 120.42004 * 359.97349 * 24 23 22 48 48 H 1.08000 * 120.78549 * 180.26126 * 25 24 23 49 49 H 1.07994 * 120.42016 * 179.71107 * 26 25 24 50 50 H 1.08003 * 119.61591 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1845 -0.0006 5 6 4.1578 2.5823 0.0000 6 7 5.6182 2.4666 -0.0012 7 7 6.4406 2.4001 1.1308 8 6 7.6820 2.3017 0.7291 9 6 7.6898 2.3017 -0.6695 10 6 6.4089 2.4048 -1.0931 11 6 5.9472 2.4372 -2.5273 12 7 5.5784 1.0807 -2.9538 13 6 6.7542 0.2007 -2.9850 14 6 7.7172 0.6861 -4.0377 15 1 7.4511 1.5208 -4.6692 16 6 8.9378 0.0646 -4.1946 17 7 9.7784 0.4885 -5.1130 18 14 9.3977 -1.3797 -3.1028 19 1 8.9514 -2.6443 -3.7407 20 1 10.8710 -1.4114 -2.9184 21 1 8.7366 -1.2316 -1.7814 22 6 4.9037 1.1042 -4.2584 23 6 4.2161 -0.2163 -4.4923 24 6 2.8806 -0.3584 -4.1652 25 6 2.2562 -1.5758 -4.3889 26 6 3.0044 -2.6124 -4.9261 27 6 4.3367 -2.3974 -5.2234 28 7 4.8966 -1.2242 -5.0016 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.6887 1.8463 0.8901 33 1 1.6886 1.8464 -0.8900 34 1 3.8568 0.6438 -0.8909 35 1 3.8575 0.6434 0.8891 36 1 3.8365 3.1227 0.8904 37 1 3.8358 3.1238 -0.8895 38 1 8.5505 2.2323 1.3673 39 1 8.5639 2.2322 -1.3001 40 1 5.0816 3.0937 -2.6157 41 1 6.7524 2.8106 -3.1600 42 1 7.2437 0.2136 -2.0112 43 1 6.4407 -0.8164 -3.2205 44 1 10.6373 0.0515 -5.2232 45 1 4.1651 1.9057 -4.2712 46 1 5.6390 1.2752 -5.0448 47 1 2.3297 0.4694 -3.7438 48 1 1.2129 -1.7146 -4.1471 49 1 2.5518 -3.5756 -5.1093 50 1 4.9264 -3.1998 -5.6416 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282885020.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:46:30 Heat of formation + Delta-G solvation = 59.914799 kcal Electronic energy + Delta-G solvation = -31474.044174 eV Core-core repulsion = 27502.825635 eV Total energy + Delta-G solvation = -3971.218539 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.15925 -40.98162 -38.86893 -38.37929 -35.66903 -34.48775 -33.37329 -32.96261 -31.89931 -31.16085 -29.64981 -27.81718 -27.55881 -25.94399 -25.70719 -24.22449 -23.46722 -22.89990 -21.90127 -21.66587 -20.29602 -19.08276 -17.86166 -17.45845 -17.12469 -17.11319 -16.96311 -16.68692 -16.38909 -16.08723 -16.03662 -15.82555 -15.40375 -15.22741 -14.86744 -14.48346 -14.37714 -14.34941 -14.07412 -13.99500 -13.55268 -13.20542 -13.16794 -13.02325 -12.91469 -12.73086 -12.64622 -12.46999 -12.29101 -12.19195 -11.95786 -11.90581 -11.75261 -11.60641 -11.50795 -10.70965 -10.61004 -10.53147 -10.18006 -10.06138 -9.80009 -9.38039 -8.96907 -8.21875 -6.18847 0.32408 0.57860 0.94974 1.31343 1.33265 1.43553 1.67446 1.95604 2.37711 2.89948 2.96852 3.16514 3.45776 3.67377 3.71148 3.84369 3.96155 4.09872 4.13320 4.15588 4.22445 4.28468 4.34921 4.41050 4.41431 4.46509 4.55276 4.56904 4.62165 4.62420 4.75155 4.81218 4.88054 4.92341 4.93322 4.95902 5.07938 5.11708 5.15358 5.24513 5.30632 5.37438 5.39662 5.42172 5.60066 5.82385 5.97100 6.08551 6.18374 6.33297 6.36371 6.37769 6.81674 6.84233 7.37453 7.44782 8.94447 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.007462 B = 0.005653 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3751.244815 B = 4951.935724 C = 7698.744805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.420 6.420 3 C 0.074 3.926 4 C -0.130 4.130 5 C 0.139 3.861 6 N -0.360 5.360 7 N -0.323 5.323 8 C 0.040 3.960 9 C -0.286 4.286 10 C 0.112 3.888 11 C 0.121 3.879 12 N -0.509 5.509 13 C 0.171 3.829 14 C -0.506 4.506 15 H 0.046 0.954 16 C 0.027 3.973 17 N -0.946 5.946 18 Si 0.923 3.077 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.260 1.260 22 C 0.103 3.897 23 C 0.126 3.874 24 C -0.152 4.152 25 C -0.077 4.077 26 C -0.174 4.174 27 C 0.068 3.932 28 N -0.508 5.508 29 H 0.089 0.911 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.046 0.954 36 H 0.107 0.893 37 H 0.117 0.883 38 H 0.202 0.798 39 H 0.127 0.873 40 H 0.109 0.891 41 H 0.050 0.950 42 H 0.020 0.980 43 H 0.017 0.983 44 H 0.260 0.740 45 H 0.110 0.890 46 H 0.035 0.965 47 H 0.155 0.845 48 H 0.166 0.834 49 H 0.160 0.840 50 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.378 1.949 7.939 23.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.340 6.340 3 C -0.003 4.003 4 C -0.169 4.169 5 C 0.019 3.981 6 N -0.143 5.143 7 N -0.145 5.145 8 C -0.145 4.145 9 C -0.316 4.316 10 C -0.017 4.017 11 C -0.008 4.008 12 N -0.232 5.232 13 C 0.044 3.956 14 C -0.545 4.545 15 H 0.064 0.936 16 C -0.171 4.171 17 N -0.588 5.588 18 Si 0.750 3.250 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.185 1.185 22 C -0.025 4.025 23 C -0.012 4.012 24 C -0.172 4.172 25 C -0.103 4.103 26 C -0.194 4.194 27 C -0.089 4.089 28 N -0.217 5.217 29 H 0.108 0.892 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.065 0.935 36 H 0.126 0.874 37 H 0.135 0.865 38 H 0.219 0.781 39 H 0.145 0.855 40 H 0.127 0.873 41 H 0.069 0.931 42 H 0.038 0.962 43 H 0.035 0.965 44 H 0.069 0.931 45 H 0.128 0.872 46 H 0.053 0.947 47 H 0.173 0.827 48 H 0.184 0.816 49 H 0.178 0.822 50 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -22.492 1.778 9.039 24.305 hybrid contribution 1.554 -0.735 -1.047 2.013 sum -20.938 1.043 7.992 22.436 Atomic orbital electron populations 1.22901 0.79359 1.03533 1.01085 1.87884 1.21572 1.28887 1.95651 1.22364 0.91396 0.84671 1.01873 1.21782 0.95138 0.96911 1.03023 1.21693 0.73023 0.97551 1.05853 1.48661 1.07049 1.56120 1.02501 1.77169 1.02145 1.26155 1.09025 1.24104 0.95861 0.99702 0.94814 1.21415 0.97368 1.17272 0.95520 1.20916 0.90896 0.99370 0.90512 1.20558 1.00904 0.91547 0.87839 1.62451 1.25982 1.08447 1.26348 1.19887 0.87792 0.93064 0.94892 1.21588 1.00253 1.15478 1.17148 0.93624 1.25441 0.96711 0.98833 0.96072 1.70029 1.09571 1.43442 1.35711 0.86078 0.77143 0.81089 0.80707 1.20577 1.21077 1.18472 1.20953 0.97197 0.93180 0.91173 1.21222 0.91749 0.94290 0.93963 1.22116 0.94672 0.99996 1.00425 1.21920 1.01439 0.91963 0.94943 1.22389 0.94786 1.01582 1.00637 1.23042 0.94205 0.94311 0.97308 1.67573 1.40558 1.01229 1.12391 0.89248 0.93184 0.92522 0.91727 0.90814 0.91047 0.93477 0.87437 0.86489 0.78139 0.85477 0.87327 0.93145 0.96235 0.96503 0.93055 0.87157 0.94665 0.82702 0.81629 0.82211 0.83120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 113.37 1.25 1.60 16 2 O -0.42 -8.94 10.70 -148.98 -1.59 -10.53 16 3 C 0.07 1.25 5.94 71.98 0.43 1.68 16 4 C -0.13 -3.08 5.91 30.59 0.18 -2.90 16 5 C 0.14 3.00 6.24 86.38 0.54 3.54 16 6 N -0.36 -11.25 3.61 -334.70 -1.21 -12.46 16 7 N -0.32 -11.05 12.58 -57.02 -0.72 -11.77 16 8 C 0.04 1.35 12.03 85.23 1.02 2.38 16 9 C -0.29 -11.05 9.54 21.99 0.21 -10.84 16 10 C 0.11 3.96 5.69 41.40 0.24 4.20 16 11 C 0.12 4.12 4.97 85.56 0.43 4.54 16 12 N -0.51 -19.23 4.53 -909.93 -4.13 -23.35 16 13 C 0.17 8.27 3.80 85.56 0.32 8.59 16 14 C -0.51 -28.13 7.92 25.60 0.20 -27.92 16 15 H 0.05 2.76 6.18 -2.91 -0.02 2.74 16 16 C 0.03 1.59 5.47 84.65 0.46 2.05 16 17 N -0.95 -59.45 13.96 21.45 0.30 -59.16 16 18 Si 0.92 47.33 27.55 68.60 1.89 49.22 16 19 H -0.28 -14.30 7.11 99.48 0.71 -13.59 16 20 H -0.28 -14.25 7.11 99.48 0.71 -13.55 16 21 H -0.26 -13.06 6.43 99.48 0.64 -12.42 16 22 C 0.10 3.62 5.10 85.56 0.44 4.06 16 23 C 0.13 4.34 5.85 42.56 0.25 4.59 16 24 C -0.15 -3.85 9.72 22.36 0.22 -3.63 16 25 C -0.08 -1.64 10.18 22.47 0.23 -1.41 16 26 C -0.17 -4.11 10.11 22.36 0.23 -3.88 16 27 C 0.07 2.20 11.18 84.67 0.95 3.14 16 28 N -0.51 -20.35 9.00 -183.88 -1.66 -22.00 16 29 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 31 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.07 2.13 8.02 -2.39 -0.02 2.11 16 35 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.12 1.88 7.15 -2.39 -0.02 1.86 16 38 H 0.20 5.42 8.06 -2.91 -0.02 5.40 16 39 H 0.13 5.44 8.06 -2.91 -0.02 5.42 16 40 H 0.11 2.73 6.97 -2.39 -0.02 2.71 16 41 H 0.05 2.04 6.71 -2.39 -0.02 2.02 16 42 H 0.02 1.01 5.04 -2.39 -0.01 1.00 16 43 H 0.02 0.89 6.21 -2.39 -0.01 0.87 16 44 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 45 H 0.11 2.85 7.73 -2.39 -0.02 2.83 16 46 H 0.04 1.55 6.04 -2.38 -0.01 1.53 16 47 H 0.16 2.92 8.06 -2.91 -0.02 2.90 16 48 H 0.17 2.20 8.06 -2.91 -0.02 2.18 16 49 H 0.16 2.59 8.06 -2.91 -0.02 2.57 16 50 H 0.15 4.41 8.06 -2.91 -0.02 4.39 16 Total: -1.00 -78.87 406.93 1.33 -77.54 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: 0.86 Total: 22.74 kcal Atomic # 6 Polarization: -17.82 SS G_CDS: 7.59 Total: -10.23 kcal Atomic # 7 Polarization: -121.33 SS G_CDS: -7.41 Total: -128.74 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: -1.59 Total: -10.53 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 1.89 Total: 49.22 kcal Total: -78.87 1.33 -77.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282885020.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.455 kcal (2) G-P(sol) polarization free energy of solvation -78.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds