Wall clock time and date at job start Wed Apr 1 2020 02:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36936 * 120.00326 * 2 1 4 4 H 1.08001 * 120.00260 * 203.85258 * 3 2 1 5 5 C 1.38812 * 119.99735 * 23.84666 * 3 2 1 6 6 N 1.31612 * 120.00392 * 0.20950 * 5 3 2 7 7 Si 1.86807 * 119.99754 * 180.20639 * 5 3 2 8 8 H 1.48503 * 109.46845 * 90.00175 * 7 5 3 9 9 H 1.48497 * 109.47144 * 210.00086 * 7 5 3 10 10 H 1.48501 * 109.47136 * 330.00397 * 7 5 3 11 11 C 1.46496 * 119.99725 * 180.02562 * 2 1 3 12 12 H 1.09000 * 110.64295 * 178.30901 * 11 2 1 13 13 C 1.55444 * 110.71442 * 54.99708 * 11 2 1 14 14 C 1.54902 * 101.45418 * 206.14593 * 13 11 2 15 15 N 1.47423 * 104.92986 * 37.00328 * 14 13 11 16 16 C 1.34781 * 125.65044 * 155.83746 * 15 14 13 17 17 O 1.21512 * 119.99735 * 179.97438 * 16 15 14 18 18 C 1.48181 * 119.99885 * 359.97155 * 16 15 14 19 19 C 1.39034 * 119.68889 * 179.72658 * 18 16 15 20 20 C 1.39449 * 118.95872 * 179.78222 * 19 18 16 21 21 N 1.39189 * 120.83842 * 180.22191 * 20 19 18 22 22 C 1.48530 * 111.00378 * 116.19371 * 21 20 19 23 23 C 1.54942 * 103.22604 * 159.72223 * 22 21 20 24 24 C 1.54594 * 102.92041 * 322.58632 * 23 22 21 25 25 C 1.47900 * 110.99884 * 233.59518 * 21 20 19 26 26 C 1.39422 * 118.33227 * 0.48738 * 20 19 18 27 27 C 1.38226 * 119.26673 * 359.75271 * 26 20 19 28 28 N 1.31649 * 120.99142 * 0.02562 * 27 26 20 29 29 C 1.47027 * 108.70312 * 335.81574 * 15 14 13 30 30 H 1.08997 * 109.47065 * 275.66534 * 1 2 3 31 31 H 1.09001 * 109.47269 * 35.66009 * 1 2 3 32 32 H 1.08995 * 109.47391 * 155.66515 * 1 2 3 33 33 H 0.96997 * 120.00523 * 179.97438 * 6 5 3 34 34 H 1.08996 * 111.11459 * 88.09023 * 13 11 2 35 35 H 1.08998 * 111.00781 * 324.15629 * 13 11 2 36 36 H 1.09003 * 110.36919 * 278.10932 * 14 13 11 37 37 H 1.09005 * 110.36645 * 155.89390 * 14 13 11 38 38 H 1.08004 * 120.52134 * 0.02562 * 19 18 16 39 39 H 1.08997 * 110.66760 * 278.15696 * 22 21 20 40 40 H 1.08994 * 110.66874 * 41.29213 * 22 21 20 41 41 H 1.09001 * 110.72497 * 204.22470 * 23 22 21 42 42 H 1.09001 * 110.87708 * 81.01532 * 23 22 21 43 43 H 1.09004 * 110.31004 * 263.03970 * 24 23 22 44 44 H 1.09005 * 110.30662 * 140.87255 * 24 23 22 45 45 H 1.08999 * 109.91904 * 333.49914 * 25 21 20 46 46 H 1.09002 * 109.92214 * 94.79957 * 25 21 20 47 47 H 1.07997 * 120.36901 * 179.73624 * 26 20 19 48 48 H 1.08002 * 119.50912 * 180.02562 * 27 26 20 49 49 H 1.09006 * 109.87854 * 120.47687 * 29 15 14 50 50 H 1.08996 * 109.88073 * 241.63905 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1606 1.2258 -0.3782 5 6 1.5446 2.3367 0.4860 6 7 0.3142 2.2873 0.9507 7 14 2.4766 3.9556 0.4807 8 1 2.2292 4.6650 -0.8003 9 1 2.0112 4.7985 1.6112 10 1 3.9304 3.6903 0.6268 11 6 2.1974 -1.2687 -0.0006 12 1 3.2725 -1.0918 -0.0306 13 6 1.7500 -2.1613 -1.1919 14 6 2.0637 -3.5780 -0.6497 15 7 1.7323 -3.5173 0.7856 16 6 1.4052 -4.5697 1.5615 17 8 1.1504 -4.4014 2.7376 18 6 1.3564 -5.9319 0.9803 19 6 1.0239 -7.0137 1.7879 20 6 0.9780 -8.2883 1.2241 21 7 0.6451 -9.3981 1.9954 22 6 -0.6193 -10.0162 1.5208 23 6 -0.5494 -11.4530 2.0966 24 6 0.9495 -11.8067 1.9622 25 6 1.6768 -10.4517 1.8811 26 6 1.2795 -8.4239 -0.1304 27 6 1.6063 -7.3000 -0.8658 28 7 1.6367 -6.1089 -0.3060 29 6 1.8182 -2.1186 1.2305 30 1 -0.3633 0.1014 1.0226 31 1 -0.3634 0.8350 -0.5991 32 1 -0.3634 -0.9363 -0.4234 33 1 -0.1086 3.0914 1.2906 34 1 2.3361 -1.9464 -2.0854 35 1 0.6842 -2.0453 -1.3885 36 1 3.1198 -3.8111 -0.7856 37 1 1.4441 -4.3218 -1.1508 38 1 0.8006 -6.8686 2.8346 39 1 -1.4819 -9.4832 1.9207 40 1 -0.6511 -10.0395 0.4316 41 1 -1.1611 -12.1353 1.5063 42 1 -0.8570 -11.4679 3.1422 43 1 1.1222 -12.3837 1.0538 44 1 1.2862 -12.3650 2.8358 45 1 2.1928 -10.3640 0.9250 46 1 2.3901 -10.3635 2.7006 47 1 1.2583 -9.3963 -0.5997 48 1 1.8401 -7.4005 -1.9154 49 1 0.8540 -1.7943 1.6221 50 1 2.5848 -2.0206 1.9991 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971882694.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:45:11 Heat of formation + Delta-G solvation = 61.345483 kcal Electronic energy + Delta-G solvation = -29977.295524 eV Core-core repulsion = 26006.139025 eV Total energy + Delta-G solvation = -3971.156500 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.17504 -39.71950 -38.52965 -37.27935 -34.77865 -33.78352 -31.88205 -31.34850 -29.79823 -29.56820 -29.41945 -27.83358 -26.01577 -25.16222 -23.57703 -23.15340 -22.25868 -21.65529 -21.39001 -19.59429 -19.09167 -17.69058 -17.31185 -16.99052 -16.57422 -15.94789 -15.84138 -15.39731 -15.29909 -14.93792 -14.65704 -14.45136 -14.18897 -13.73346 -13.37768 -13.29763 -13.16358 -12.94428 -12.80124 -12.59942 -12.45756 -12.19424 -12.05445 -11.87890 -11.72518 -11.70522 -11.42525 -11.11240 -10.84746 -10.77498 -10.52787 -10.33033 -10.26064 -10.15653 -9.83830 -9.80927 -9.72625 -9.44533 -9.38578 -9.10602 -8.51810 -8.19187 -6.76485 -5.71808 -3.20411 0.43828 0.87797 2.76471 3.04962 3.38488 3.42299 3.45461 3.46986 3.72491 4.01101 4.08664 4.27059 4.39796 4.48847 4.52437 4.56943 4.72890 4.82815 4.90879 4.95654 5.13027 5.21243 5.25284 5.31035 5.33694 5.39860 5.44863 5.47569 5.51183 5.56543 5.63640 5.69623 5.79530 5.85971 5.97503 6.00823 6.13699 6.18965 6.31084 6.44140 6.51358 6.66651 6.74741 6.79735 6.91257 6.96086 7.49261 7.52868 7.77580 7.85328 7.87252 8.36066 8.41575 9.24831 9.85508 10.34928 11.31936 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.032266 B = 0.002006 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.578652 B =13957.371712 C =14247.520557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.589 5.589 3 C -0.258 4.258 4 H 0.071 0.929 5 C 0.004 3.996 6 N -0.908 5.908 7 Si 0.908 3.092 8 H -0.288 1.288 9 H -0.290 1.290 10 H -0.279 1.279 11 C 0.173 3.827 12 H 0.078 0.922 13 C -0.158 4.158 14 C 0.105 3.895 15 N -0.588 5.588 16 C 0.573 3.427 17 O -0.539 6.539 18 C 0.101 3.899 19 C -0.091 4.091 20 C 0.121 3.879 21 N -0.484 5.484 22 C 0.039 3.961 23 C -0.123 4.123 24 C -0.131 4.131 25 C 0.036 3.964 26 C -0.191 4.191 27 C 0.106 3.894 28 N -0.453 5.453 29 C 0.085 3.915 30 H 0.027 0.973 31 H 0.052 0.948 32 H -0.003 1.003 33 H 0.253 0.747 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.062 0.938 37 H 0.098 0.902 38 H 0.154 0.846 39 H 0.089 0.911 40 H 0.053 0.947 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.069 0.931 44 H 0.076 0.924 45 H 0.054 0.946 46 H 0.085 0.915 47 H 0.134 0.866 48 H 0.162 0.838 49 H 0.075 0.925 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.793 -29.644 -3.862 29.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.310 5.310 3 C -0.387 4.387 4 H 0.089 0.911 5 C -0.194 4.194 6 N -0.553 5.553 7 Si 0.738 3.262 8 H -0.215 1.215 9 H -0.216 1.216 10 H -0.205 1.205 11 C 0.062 3.938 12 H 0.096 0.904 13 C -0.198 4.198 14 C -0.017 4.017 15 N -0.320 5.320 16 C 0.359 3.641 17 O -0.416 6.416 18 C -0.037 4.037 19 C -0.112 4.112 20 C 0.019 3.981 21 N -0.205 5.205 22 C -0.087 4.087 23 C -0.161 4.161 24 C -0.169 4.169 25 C -0.091 4.091 26 C -0.213 4.213 27 C -0.053 4.053 28 N -0.165 5.165 29 C -0.039 4.039 30 H 0.046 0.954 31 H 0.071 0.929 32 H 0.015 0.985 33 H 0.064 0.936 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.116 0.884 38 H 0.172 0.828 39 H 0.107 0.893 40 H 0.071 0.929 41 H 0.094 0.906 42 H 0.097 0.903 43 H 0.088 0.912 44 H 0.095 0.905 45 H 0.072 0.928 46 H 0.104 0.896 47 H 0.152 0.848 48 H 0.180 0.820 49 H 0.093 0.907 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.687 -28.469 -3.048 28.640 hybrid contribution 0.341 -0.135 -0.287 0.465 sum 1.027 -28.604 -3.334 28.816 Atomic orbital electron populations 1.20863 0.82202 0.95455 0.99528 1.43913 1.02044 0.99867 1.85155 1.19244 0.98612 0.85722 1.35140 0.91145 1.25155 0.96810 0.98816 0.98612 1.70082 1.12364 1.27594 1.45251 0.86207 0.79307 0.83540 0.77178 1.21490 1.21627 1.20458 1.21419 0.96305 0.85850 0.90182 0.90393 1.23468 1.02595 0.93970 0.99746 1.22623 1.00672 0.98458 0.79993 1.48375 1.64824 1.07374 1.11386 1.17474 0.78556 0.82730 0.85318 1.90792 1.50668 1.84702 1.15472 1.21222 0.98236 0.94450 0.89828 1.22002 0.96831 0.90152 1.02261 1.19198 0.96345 0.92335 0.90261 1.62252 1.03722 1.04555 1.50008 1.23388 0.92062 0.94821 0.98445 1.22501 0.96177 0.95178 1.02275 1.22423 0.95408 0.96461 1.02650 1.23054 0.94367 0.89743 1.01887 1.22791 1.02289 1.01031 0.95229 1.22721 0.95191 0.87020 1.00389 1.67970 1.12255 1.25241 1.11054 1.23000 1.02453 0.78501 0.99965 0.95430 0.92945 0.98489 0.93645 0.90574 0.90643 0.91970 0.88445 0.82839 0.89288 0.92896 0.90575 0.90273 0.91185 0.90522 0.92786 0.89638 0.84769 0.82041 0.90715 0.92004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.10 7.69 59.85 0.46 4.56 16 2 N -0.59 -14.69 2.94 -171.21 -0.50 -15.19 16 3 C -0.26 -7.01 9.64 -15.06 -0.15 -7.15 16 4 H 0.07 1.85 7.81 -52.49 -0.41 1.44 16 5 C 0.00 0.12 5.33 -17.43 -0.09 0.03 16 6 N -0.91 -26.51 10.17 55.49 0.56 -25.95 16 7 Si 0.91 21.84 29.55 -169.99 -5.02 16.81 16 8 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 9 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 11 C 0.17 3.54 3.45 -65.94 -0.23 3.31 16 12 H 0.08 1.56 7.93 -51.93 -0.41 1.15 16 13 C -0.16 -2.66 6.61 -24.43 -0.16 -2.82 16 14 C 0.11 1.59 5.93 -2.53 -0.02 1.58 16 15 N -0.59 -10.55 3.33 -171.50 -0.57 -11.13 16 16 C 0.57 10.39 7.84 -12.17 -0.10 10.29 16 17 O -0.54 -11.35 16.65 5.36 0.09 -11.27 16 18 C 0.10 1.48 6.72 -83.06 -0.56 0.92 16 19 C -0.09 -1.18 9.58 -38.84 -0.37 -1.55 16 20 C 0.12 1.24 4.87 -83.63 -0.41 0.83 16 21 N -0.48 -4.28 5.29 -166.99 -0.88 -5.16 16 22 C 0.04 0.27 6.44 -1.90 -0.01 0.26 16 23 C -0.12 -0.63 7.06 -24.87 -0.18 -0.81 16 24 C -0.13 -0.64 6.93 -25.37 -0.18 -0.81 16 25 C 0.04 0.24 6.50 -2.76 -0.02 0.23 16 26 C -0.19 -1.59 8.02 -39.15 -0.31 -1.91 16 27 C 0.11 0.97 11.17 -17.63 -0.20 0.78 16 28 N -0.45 -5.70 6.59 -9.89 -0.07 -5.76 16 29 C 0.09 1.73 6.51 -3.06 -0.02 1.71 16 30 H 0.03 0.75 7.35 -51.93 -0.38 0.37 16 31 H 0.05 1.41 7.06 -51.93 -0.37 1.05 16 32 H 0.00 -0.07 6.14 -51.93 -0.32 -0.39 16 33 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 34 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.07 1.36 6.15 -51.93 -0.32 1.04 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.10 1.38 5.87 -51.93 -0.31 1.07 16 38 H 0.15 2.11 7.64 -52.48 -0.40 1.71 16 39 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.05 0.34 7.15 -51.93 -0.37 -0.04 16 41 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 44 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.05 0.34 6.29 -51.93 -0.33 0.01 16 46 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 47 H 0.13 0.78 7.15 -52.49 -0.38 0.40 16 48 H 0.16 0.97 8.06 -52.49 -0.42 0.55 16 49 H 0.07 1.72 7.07 -51.93 -0.37 1.35 16 50 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 389.38 15.07 5.87 5.87 Total: -1.00 -32.23 389.38 -10.77 -43.00 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -7.72 Total: -0.66 kcal Atomic # 6 Polarization: 11.97 SS G_CDS: -2.53 Total: 9.44 kcal Atomic # 7 Polarization: -61.73 SS G_CDS: -1.46 Total: -63.19 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.09 Total: -11.27 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.23 -10.77 -43.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971882694.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.341 kcal (2) G-P(sol) polarization free energy of solvation -32.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds