Wall clock time and date at job start Wed Apr 1 2020 02:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36936 * 120.00326 * 2 1 4 4 H 1.08001 * 120.00260 * 203.85258 * 3 2 1 5 5 C 1.38812 * 119.99735 * 23.84666 * 3 2 1 6 6 N 1.31612 * 120.00392 * 0.20950 * 5 3 2 7 7 Si 1.86807 * 119.99754 * 180.20639 * 5 3 2 8 8 H 1.48503 * 109.46845 * 90.00175 * 7 5 3 9 9 H 1.48497 * 109.47144 * 210.00086 * 7 5 3 10 10 H 1.48501 * 109.47136 * 330.00397 * 7 5 3 11 11 C 1.46496 * 119.99725 * 180.02562 * 2 1 3 12 12 H 1.09000 * 110.64295 * 178.30901 * 11 2 1 13 13 C 1.55444 * 110.71442 * 54.99708 * 11 2 1 14 14 C 1.54902 * 101.45418 * 206.14593 * 13 11 2 15 15 N 1.47423 * 104.92986 * 37.00328 * 14 13 11 16 16 C 1.34781 * 125.65044 * 155.83746 * 15 14 13 17 17 O 1.21512 * 119.99735 * 179.97438 * 16 15 14 18 18 C 1.48181 * 119.99885 * 359.97155 * 16 15 14 19 19 C 1.39034 * 119.68889 * 179.72658 * 18 16 15 20 20 C 1.39449 * 118.95872 * 179.78222 * 19 18 16 21 21 N 1.39189 * 120.83842 * 180.22191 * 20 19 18 22 22 C 1.48530 * 111.00378 * 116.19371 * 21 20 19 23 23 C 1.54942 * 103.22604 * 159.72223 * 22 21 20 24 24 C 1.54594 * 102.92041 * 322.58632 * 23 22 21 25 25 C 1.47900 * 110.99884 * 233.59518 * 21 20 19 26 26 C 1.39422 * 118.33227 * 0.48738 * 20 19 18 27 27 C 1.38226 * 119.26673 * 359.75271 * 26 20 19 28 28 N 1.31649 * 120.99142 * 0.02562 * 27 26 20 29 29 C 1.47027 * 108.70312 * 335.81574 * 15 14 13 30 30 H 1.08997 * 109.47065 * 275.66534 * 1 2 3 31 31 H 1.09001 * 109.47269 * 35.66009 * 1 2 3 32 32 H 1.08995 * 109.47391 * 155.66515 * 1 2 3 33 33 H 0.96997 * 120.00523 * 179.97438 * 6 5 3 34 34 H 1.08996 * 111.11459 * 88.09023 * 13 11 2 35 35 H 1.08998 * 111.00781 * 324.15629 * 13 11 2 36 36 H 1.09003 * 110.36919 * 278.10932 * 14 13 11 37 37 H 1.09005 * 110.36645 * 155.89390 * 14 13 11 38 38 H 1.08004 * 120.52134 * 0.02562 * 19 18 16 39 39 H 1.08997 * 110.66760 * 278.15696 * 22 21 20 40 40 H 1.08994 * 110.66874 * 41.29213 * 22 21 20 41 41 H 1.09001 * 110.72497 * 204.22470 * 23 22 21 42 42 H 1.09001 * 110.87708 * 81.01532 * 23 22 21 43 43 H 1.09004 * 110.31004 * 263.03970 * 24 23 22 44 44 H 1.09005 * 110.30662 * 140.87255 * 24 23 22 45 45 H 1.08999 * 109.91904 * 333.49914 * 25 21 20 46 46 H 1.09002 * 109.92214 * 94.79957 * 25 21 20 47 47 H 1.07997 * 120.36901 * 179.73624 * 26 20 19 48 48 H 1.08002 * 119.50912 * 180.02562 * 27 26 20 49 49 H 1.09006 * 109.87854 * 120.47687 * 29 15 14 50 50 H 1.08996 * 109.88073 * 241.63905 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1606 1.2258 -0.3782 5 6 1.5446 2.3367 0.4860 6 7 0.3142 2.2873 0.9507 7 14 2.4766 3.9556 0.4807 8 1 2.2292 4.6650 -0.8003 9 1 2.0112 4.7985 1.6112 10 1 3.9304 3.6903 0.6268 11 6 2.1974 -1.2687 -0.0006 12 1 3.2725 -1.0918 -0.0306 13 6 1.7500 -2.1613 -1.1919 14 6 2.0637 -3.5780 -0.6497 15 7 1.7323 -3.5173 0.7856 16 6 1.4052 -4.5697 1.5615 17 8 1.1504 -4.4014 2.7376 18 6 1.3564 -5.9319 0.9803 19 6 1.0239 -7.0137 1.7879 20 6 0.9780 -8.2883 1.2241 21 7 0.6451 -9.3981 1.9954 22 6 -0.6193 -10.0162 1.5208 23 6 -0.5494 -11.4530 2.0966 24 6 0.9495 -11.8067 1.9622 25 6 1.6768 -10.4517 1.8811 26 6 1.2795 -8.4239 -0.1304 27 6 1.6063 -7.3000 -0.8658 28 7 1.6367 -6.1089 -0.3060 29 6 1.8182 -2.1186 1.2305 30 1 -0.3633 0.1014 1.0226 31 1 -0.3634 0.8350 -0.5991 32 1 -0.3634 -0.9363 -0.4234 33 1 -0.1086 3.0914 1.2906 34 1 2.3361 -1.9464 -2.0854 35 1 0.6842 -2.0453 -1.3885 36 1 3.1198 -3.8111 -0.7856 37 1 1.4441 -4.3218 -1.1508 38 1 0.8006 -6.8686 2.8346 39 1 -1.4819 -9.4832 1.9207 40 1 -0.6511 -10.0395 0.4316 41 1 -1.1611 -12.1353 1.5063 42 1 -0.8570 -11.4679 3.1422 43 1 1.1222 -12.3837 1.0538 44 1 1.2862 -12.3650 2.8358 45 1 2.1928 -10.3640 0.9250 46 1 2.3901 -10.3635 2.7006 47 1 1.2583 -9.3963 -0.5997 48 1 1.8401 -7.4005 -1.9154 49 1 0.8540 -1.7943 1.6221 50 1 2.5848 -2.0206 1.9991 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971882694.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:45:10 Heat of formation + Delta-G solvation = 41.121148 kcal Electronic energy + Delta-G solvation = -29978.172517 eV Core-core repulsion = 26006.139025 eV Total energy + Delta-G solvation = -3972.033493 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.06789 -40.88715 -39.44407 -38.80146 -36.59141 -34.50216 -33.47419 -32.55636 -31.21352 -30.47237 -29.89609 -29.38613 -28.09289 -26.39232 -24.73891 -24.20767 -23.75040 -22.48919 -21.83853 -20.92478 -20.58173 -18.98123 -18.71747 -18.19328 -17.46800 -17.39007 -16.72562 -16.71789 -16.48709 -16.20554 -15.80147 -15.33410 -15.14248 -15.00813 -14.93858 -14.65742 -14.37014 -14.09580 -13.88373 -13.78328 -13.51935 -13.36508 -13.26397 -13.09767 -12.97069 -12.72907 -12.50643 -12.36657 -12.28831 -12.21549 -12.16316 -12.10793 -11.81996 -11.55199 -11.47947 -11.34117 -10.63812 -10.61536 -10.45630 -10.33977 -9.69884 -9.65614 -8.80901 -7.83087 -5.34141 -0.49303 0.06340 1.47343 1.49255 1.58137 1.59035 1.79145 2.50011 2.69346 2.71719 2.99041 3.30311 3.59372 3.60341 3.67321 3.82684 3.84361 3.89027 3.92082 3.97916 4.09929 4.18744 4.26884 4.29732 4.41387 4.44161 4.48742 4.53912 4.70519 4.72618 4.75548 4.82368 4.82621 4.92346 5.00503 5.01348 5.02726 5.09098 5.18517 5.19079 5.24035 5.26442 5.34266 5.44684 5.49698 5.64292 5.70065 5.74924 6.12379 6.32039 6.42766 6.64521 6.99383 7.14272 7.83319 8.29004 9.19921 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.032266 B = 0.002006 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.578652 B =13957.371712 C =14247.520557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.185 3.815 2 N -0.604 5.604 3 C -0.264 4.264 4 H 0.081 0.919 5 C -0.056 4.056 6 N -0.943 5.943 7 Si 0.975 3.025 8 H -0.283 1.283 9 H -0.299 1.299 10 H -0.266 1.266 11 C 0.168 3.832 12 H 0.085 0.915 13 C -0.143 4.143 14 C 0.116 3.884 15 N -0.592 5.592 16 C 0.567 3.433 17 O -0.584 6.584 18 C 0.081 3.919 19 C -0.105 4.105 20 C 0.125 3.875 21 N -0.506 5.506 22 C 0.036 3.964 23 C -0.119 4.119 24 C -0.125 4.125 25 C 0.033 3.967 26 C -0.168 4.168 27 C 0.113 3.887 28 N -0.466 5.466 29 C 0.096 3.904 30 H -0.007 1.007 31 H 0.027 0.973 32 H 0.022 0.978 33 H 0.247 0.753 34 H 0.101 0.899 35 H 0.063 0.937 36 H 0.083 0.917 37 H 0.116 0.884 38 H 0.131 0.869 39 H 0.076 0.924 40 H 0.066 0.934 41 H 0.095 0.905 42 H 0.070 0.930 43 H 0.089 0.911 44 H 0.080 0.920 45 H 0.065 0.935 46 H 0.075 0.925 47 H 0.172 0.828 48 H 0.205 0.795 49 H 0.039 0.961 50 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.255 -33.027 -6.940 33.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.326 5.326 3 C -0.393 4.393 4 H 0.099 0.901 5 C -0.250 4.250 6 N -0.589 5.589 7 Si 0.803 3.197 8 H -0.209 1.209 9 H -0.225 1.225 10 H -0.191 1.191 11 C 0.059 3.941 12 H 0.103 0.897 13 C -0.183 4.183 14 C -0.006 4.006 15 N -0.322 5.322 16 C 0.355 3.645 17 O -0.465 6.465 18 C -0.056 4.056 19 C -0.128 4.128 20 C 0.022 3.978 21 N -0.229 5.229 22 C -0.089 4.089 23 C -0.157 4.157 24 C -0.163 4.163 25 C -0.093 4.093 26 C -0.190 4.190 27 C -0.047 4.047 28 N -0.178 5.178 29 C -0.030 4.030 30 H 0.011 0.989 31 H 0.046 0.954 32 H 0.041 0.959 33 H 0.057 0.943 34 H 0.119 0.881 35 H 0.082 0.918 36 H 0.101 0.899 37 H 0.133 0.867 38 H 0.149 0.851 39 H 0.095 0.905 40 H 0.084 0.916 41 H 0.113 0.887 42 H 0.089 0.911 43 H 0.107 0.893 44 H 0.098 0.902 45 H 0.084 0.916 46 H 0.093 0.907 47 H 0.190 0.810 48 H 0.221 0.779 49 H 0.057 0.943 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.180 -31.899 -6.153 32.560 hybrid contribution -0.111 0.717 0.665 0.984 sum 2.069 -31.182 -5.489 31.729 Atomic orbital electron populations 1.20484 0.82851 0.95579 0.97078 1.44092 1.01981 1.01042 1.85458 1.19658 0.98936 0.86610 1.34144 0.90110 1.25980 0.97687 1.02354 0.99002 1.70283 1.13905 1.27978 1.46764 0.85151 0.78532 0.79285 0.76747 1.20927 1.22541 1.19086 1.21608 0.96301 0.84585 0.91615 0.89655 1.23354 1.02144 0.93838 0.98930 1.22750 1.02234 0.97601 0.77982 1.48433 1.64997 1.06148 1.12662 1.18142 0.77261 0.84190 0.84877 1.90749 1.52483 1.85705 1.17527 1.20565 1.01522 0.92314 0.91193 1.21899 0.98044 0.91507 1.01319 1.19265 0.95623 0.91605 0.91302 1.62189 1.05079 1.04991 1.50596 1.23461 0.90702 0.95565 0.99219 1.22500 0.96848 0.94314 1.02068 1.22422 0.94643 0.95449 1.03823 1.23133 0.93972 0.90105 1.02091 1.23160 0.99332 1.02554 0.93922 1.23430 0.93416 0.85860 1.02007 1.67840 1.12880 1.27330 1.09732 1.22608 1.00034 0.80620 0.99725 0.98911 0.95398 0.95933 0.94341 0.88083 0.91790 0.89916 0.86653 0.85147 0.90550 0.91564 0.88660 0.91095 0.89284 0.90165 0.91650 0.90656 0.81017 0.77860 0.94296 0.93236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.63 7.69 127.77 0.98 10.61 16 2 N -0.60 -30.70 2.94 -695.60 -2.05 -32.75 16 3 C -0.26 -14.45 9.64 84.03 0.81 -13.64 16 4 H 0.08 4.18 7.81 -2.91 -0.02 4.16 16 5 C -0.06 -3.16 5.33 84.86 0.45 -2.71 16 6 N -0.94 -57.19 10.17 21.65 0.22 -56.97 16 7 Si 0.97 45.53 29.55 68.60 2.03 47.56 16 8 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 9 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 10 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 11 C 0.17 6.85 3.45 46.28 0.16 7.01 16 12 H 0.09 3.35 7.93 -2.39 -0.02 3.33 16 13 C -0.14 -4.57 6.61 32.09 0.21 -4.35 16 14 C 0.12 3.27 5.93 86.85 0.52 3.78 16 15 N -0.59 -21.51 3.33 -814.80 -2.71 -24.22 16 16 C 0.57 21.37 7.84 86.88 0.68 22.05 16 17 O -0.58 -26.45 16.65 -3.75 -0.06 -26.52 16 18 C 0.08 2.35 6.72 41.83 0.28 2.63 16 19 C -0.11 -2.79 9.58 22.75 0.22 -2.57 16 20 C 0.12 2.33 4.87 38.55 0.19 2.52 16 21 N -0.51 -8.17 5.29 -682.24 -3.61 -11.78 16 22 C 0.04 0.42 6.44 86.65 0.56 0.98 16 23 C -0.12 -0.91 7.06 31.80 0.22 -0.69 16 24 C -0.13 -0.82 6.93 31.47 0.22 -0.60 16 25 C 0.03 0.36 6.50 86.45 0.56 0.93 16 26 C -0.17 -2.08 8.02 22.55 0.18 -1.90 16 27 C 0.11 1.56 11.17 84.72 0.95 2.51 16 28 N -0.47 -10.51 6.59 -185.22 -1.22 -11.73 16 29 C 0.10 4.06 6.51 86.73 0.56 4.62 16 30 H -0.01 -0.44 7.35 -2.39 -0.02 -0.46 16 31 H 0.03 1.55 7.06 -2.39 -0.02 1.53 16 32 H 0.02 1.03 6.14 -2.39 -0.01 1.01 16 33 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 34 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 35 H 0.06 2.21 6.15 -2.39 -0.01 2.20 16 36 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.12 2.92 5.87 -2.38 -0.01 2.91 16 38 H 0.13 3.94 7.64 -2.91 -0.02 3.92 16 39 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.07 0.59 7.15 -2.39 -0.02 0.58 16 41 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 42 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.09 0.29 8.14 -2.38 -0.02 0.27 16 44 H 0.08 0.49 8.14 -2.38 -0.02 0.47 16 45 H 0.07 0.56 6.29 -2.39 -0.02 0.55 16 46 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 47 H 0.17 0.90 7.15 -2.91 -0.02 0.88 16 48 H 0.20 1.12 8.06 -2.91 -0.02 1.09 16 49 H 0.04 1.92 7.07 -2.38 -0.02 1.90 16 50 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -75.12 389.38 1.29 -73.82 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: 0.94 Total: 11.40 kcal Atomic # 6 Polarization: 23.42 SS G_CDS: 7.75 Total: 31.17 kcal Atomic # 7 Polarization: -128.08 SS G_CDS: -9.36 Total: -137.44 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: -0.06 Total: -26.52 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -75.12 1.29 -73.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971882694.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.943 kcal (2) G-P(sol) polarization free energy of solvation -75.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds