Wall clock time and date at job start Wed Apr 1 2020 02:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36937 * 119.99950 * 2 1 4 4 H 1.08002 * 120.00096 * 141.70894 * 3 2 1 5 5 C 1.38811 * 119.99831 * 321.70704 * 3 2 1 6 6 N 1.31622 * 120.00012 * 159.00321 * 5 3 2 7 7 Si 1.86797 * 120.00032 * 339.00666 * 5 3 2 8 8 H 1.48506 * 109.47105 * 95.31775 * 7 5 3 9 9 H 1.48496 * 109.47343 * 215.31112 * 7 5 3 10 10 H 1.48501 * 109.47531 * 335.31621 * 7 5 3 11 11 C 1.46504 * 120.00282 * 179.97438 * 2 1 3 12 12 H 1.08997 * 110.64240 * 176.86028 * 11 2 1 13 13 C 1.55148 * 110.71923 * 300.00692 * 11 2 1 14 14 C 1.54910 * 101.58336 * 153.86181 * 13 11 2 15 15 N 1.47420 * 104.82966 * 322.99280 * 14 13 11 16 16 C 1.34780 * 125.64811 * 204.08920 * 15 14 13 17 17 O 1.21588 * 120.00355 * 184.89808 * 16 15 14 18 18 C 1.47542 * 119.99926 * 4.90461 * 16 15 14 19 19 C 1.40346 * 120.47566 * 152.22051 * 18 16 15 20 20 C 1.36862 * 118.49139 * 179.97438 * 19 18 16 21 21 C 1.39398 * 119.37750 * 0.02562 * 20 19 18 22 22 N 1.38460 * 119.53611 * 180.02562 * 21 20 19 23 23 C 1.48536 * 110.99946 * 62.60228 * 22 21 20 24 24 C 1.54935 * 103.22616 * 159.71774 * 23 22 21 25 25 C 1.54593 * 102.92384 * 322.58783 * 24 23 22 26 26 C 1.47895 * 110.99815 * 179.97438 * 22 21 20 27 27 N 1.32593 * 120.92438 * 359.97438 * 21 20 19 28 28 C 1.31676 * 121.63727 * 0.02562 * 27 21 20 29 29 C 1.47016 * 108.70556 * 24.35035 * 15 14 13 30 30 H 1.08997 * 109.47476 * 267.66552 * 1 2 3 31 31 H 1.09004 * 109.47061 * 27.67359 * 1 2 3 32 32 H 1.08999 * 109.46460 * 147.66659 * 1 2 3 33 33 H 0.97002 * 119.99759 * 180.02562 * 6 5 3 34 34 H 1.09001 * 111.01087 * 35.78702 * 13 11 2 35 35 H 1.09004 * 111.03886 * 271.94877 * 13 11 2 36 36 H 1.08996 * 110.37113 * 204.15077 * 14 13 11 37 37 H 1.09005 * 110.45587 * 81.87404 * 14 13 11 38 38 H 1.07995 * 120.75847 * 0.02562 * 19 18 16 39 39 H 1.08000 * 120.30706 * 180.29610 * 20 19 18 40 40 H 1.09003 * 110.66871 * 278.15314 * 23 22 21 41 41 H 1.08996 * 110.66683 * 41.28625 * 23 22 21 42 42 H 1.08995 * 110.72496 * 204.22513 * 24 23 22 43 43 H 1.09002 * 110.72336 * 80.94877 * 24 23 22 44 44 H 1.08995 * 110.30731 * 263.04128 * 25 24 23 45 45 H 1.09001 * 110.30867 * 140.87386 * 25 24 23 46 46 H 1.08997 * 109.92002 * 333.50922 * 26 22 21 47 47 H 1.09002 * 109.91468 * 94.80797 * 26 22 21 48 48 H 1.07999 * 119.74251 * 179.97438 * 28 27 21 49 49 H 1.09000 * 109.88298 * 118.13634 * 29 15 14 50 50 H 1.09004 * 109.88453 * 239.29773 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.0555 1.2865 0.5796 5 6 1.6796 2.2587 -0.7450 6 7 2.0600 3.4832 -0.4479 7 14 0.5070 1.9645 -2.1690 8 1 -0.8919 2.1408 -1.7029 9 1 0.7931 2.9364 -3.2547 10 1 0.6875 0.5825 -2.6816 11 6 2.1976 -1.2687 0.0006 12 1 3.2717 -1.0922 -0.0554 13 6 1.8436 -2.1064 1.2576 14 6 2.1172 -3.5471 0.7584 15 7 1.6780 -3.5487 -0.6488 16 6 1.2951 -4.6336 -1.3510 17 8 1.0364 -4.5315 -2.5346 18 6 1.1897 -5.9450 -0.6833 19 6 0.2934 -6.9153 -1.1576 20 6 0.2292 -8.1180 -0.5077 21 6 1.0485 -8.3427 0.5975 22 7 0.9866 -9.5586 1.2571 23 6 1.3921 -10.6716 0.3610 24 6 1.7695 -11.8032 1.3496 25 6 2.4506 -11.0379 2.5074 26 6 1.9310 -9.5930 2.3947 27 7 1.8869 -7.4088 1.0253 28 6 1.9799 -6.2385 0.4290 29 6 1.7327 -2.1719 -1.1614 30 1 -0.3634 -0.0419 1.0268 31 1 -0.3633 0.9101 -0.4773 32 1 -0.3632 -0.8684 -0.5497 33 1 1.7311 4.2329 -0.9682 34 1 0.7957 -1.9795 1.5294 35 1 2.4953 -1.8522 2.0935 36 1 1.5375 -4.2658 1.3376 37 1 3.1806 -3.7776 0.8242 38 1 -0.3309 -6.7177 -2.0163 39 1 -0.4467 -8.8874 -0.8506 40 1 0.5603 -10.9769 -0.2739 41 1 2.2532 -10.3852 -0.2427 42 1 2.4657 -12.5029 0.8874 43 1 0.8774 -12.3211 1.7018 44 1 3.5340 -11.0604 2.3899 45 1 2.1643 -11.4697 3.4664 46 1 2.7622 -8.9129 2.2081 47 1 1.4163 -9.3113 3.3133 48 1 2.6730 -5.4999 0.8036 49 1 2.4419 -2.1116 -1.9869 50 1 0.7431 -1.8615 -1.4967 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972557242.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:45:20 Heat of formation + Delta-G solvation = 68.069927 kcal Electronic energy + Delta-G solvation = -30137.842296 eV Core-core repulsion = 26166.977390 eV Total energy + Delta-G solvation = -3970.864906 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.31112 -39.96161 -38.44971 -37.49932 -35.09239 -33.34110 -32.85879 -31.88163 -30.48346 -29.75414 -29.40752 -28.00614 -26.26451 -24.93175 -24.08684 -23.37140 -22.41445 -21.61836 -21.06044 -19.97788 -19.33613 -17.91246 -17.64772 -17.15329 -16.75896 -16.31478 -16.06621 -15.41907 -15.20073 -14.99086 -14.76029 -14.37053 -14.06558 -14.01971 -13.69653 -13.46452 -13.31774 -13.06454 -12.88817 -12.74780 -12.61022 -12.49282 -12.32484 -12.09674 -11.86912 -11.84906 -11.73443 -11.61794 -11.04259 -10.98783 -10.81886 -10.59445 -10.36226 -10.25011 -10.23820 -10.07298 -9.97236 -9.65040 -9.56608 -8.61720 -8.57708 -8.41904 -6.92179 -6.07063 -3.52645 0.45226 0.98087 2.70339 3.00810 3.16463 3.28445 3.45047 3.50503 3.59356 3.92290 4.12888 4.32729 4.41923 4.46155 4.47722 4.61598 4.74983 4.77224 4.80021 4.83425 4.96727 4.97668 5.11302 5.20308 5.27076 5.29373 5.33435 5.34905 5.36738 5.50064 5.54394 5.57939 5.62700 5.68907 5.76341 5.81585 5.84668 6.05527 6.07589 6.14698 6.21562 6.26264 6.38647 6.40930 6.61820 6.64156 6.72482 6.75212 7.54547 7.59609 7.95857 8.18497 8.29664 8.87197 9.61099 10.00339 11.07613 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.027848 B = 0.002201 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.211660 B =12717.917207 C =13358.970368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.595 5.595 3 C -0.275 4.275 4 H 0.082 0.918 5 C 0.038 3.962 6 N -0.896 5.896 7 Si 0.882 3.118 8 H -0.286 1.286 9 H -0.301 1.301 10 H -0.268 1.268 11 C 0.171 3.829 12 H 0.090 0.910 13 C -0.150 4.150 14 C 0.089 3.911 15 N -0.606 5.606 16 C 0.574 3.426 17 O -0.541 6.541 18 C -0.202 4.202 19 C -0.001 4.001 20 C -0.186 4.186 21 C 0.319 3.681 22 N -0.463 5.463 23 C 0.043 3.957 24 C -0.124 4.124 25 C -0.134 4.134 26 C 0.034 3.966 27 N -0.520 5.520 28 C 0.147 3.853 29 C 0.083 3.917 30 H 0.019 0.981 31 H 0.047 0.953 32 H 0.032 0.968 33 H 0.265 0.735 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.146 0.854 39 H 0.141 0.859 40 H 0.091 0.909 41 H 0.057 0.943 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.070 0.930 45 H 0.075 0.925 46 H 0.085 0.915 47 H 0.083 0.917 48 H 0.174 0.826 49 H 0.067 0.933 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.564 -30.089 5.031 30.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.317 5.317 3 C -0.404 4.404 4 H 0.100 0.900 5 C -0.163 4.163 6 N -0.537 5.537 7 Si 0.713 3.287 8 H -0.214 1.214 9 H -0.229 1.229 10 H -0.192 1.192 11 C 0.061 3.939 12 H 0.108 0.892 13 C -0.190 4.190 14 C -0.034 4.034 15 N -0.339 5.339 16 C 0.363 3.637 17 O -0.419 6.419 18 C -0.208 4.208 19 C -0.028 4.028 20 C -0.208 4.208 21 C 0.087 3.913 22 N -0.181 5.181 23 C -0.082 4.082 24 C -0.162 4.162 25 C -0.172 4.172 26 C -0.093 4.093 27 N -0.234 5.234 28 C -0.011 4.011 29 C -0.041 4.041 30 H 0.038 0.962 31 H 0.065 0.935 32 H 0.050 0.950 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.164 0.836 39 H 0.159 0.841 40 H 0.110 0.890 41 H 0.075 0.925 42 H 0.096 0.904 43 H 0.097 0.903 44 H 0.089 0.911 45 H 0.094 0.906 46 H 0.103 0.897 47 H 0.101 0.899 48 H 0.191 0.809 49 H 0.086 0.914 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.747 -30.144 5.237 30.605 hybrid contribution -0.664 0.351 -1.738 1.893 sum -1.411 -29.793 3.499 30.031 Atomic orbital electron populations 1.21351 0.84798 0.99198 0.98419 1.44034 1.00540 1.01338 1.85778 1.18776 1.10431 0.86805 1.24364 0.90041 1.25519 0.98072 0.95309 0.97437 1.69848 1.46178 0.98005 1.39644 0.86871 0.80210 0.78133 0.83518 1.21404 1.22852 1.19233 1.21545 0.97096 0.85312 0.89899 0.89191 1.23332 1.02958 0.92521 1.00181 1.22739 0.99183 0.99643 0.81877 1.48417 1.64641 1.07816 1.13031 1.17621 0.77514 0.82715 0.85899 1.90792 1.50886 1.85415 1.14838 1.20838 1.03340 0.96552 1.00105 1.21272 0.93890 0.90660 0.96934 1.21240 1.02670 0.99143 0.97777 1.20124 0.89891 0.91528 0.89788 1.61753 1.47528 1.00742 1.08086 1.23346 1.00326 0.89544 0.95002 1.22520 1.01161 0.96880 0.95638 1.22459 1.00443 0.94830 0.99458 1.22923 0.95752 0.97200 0.93437 1.67672 1.20121 1.02855 1.32760 1.23479 0.95441 0.92766 0.89389 1.22904 1.02620 0.79255 0.99320 0.96247 0.93463 0.94960 0.92538 0.90597 0.89798 0.90553 0.90801 0.83644 0.84093 0.89038 0.92483 0.90366 0.90288 0.91088 0.90632 0.89677 0.89885 0.80890 0.91433 0.90995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.28 8.35 59.85 0.50 2.78 16 2 N -0.60 -13.47 2.49 -171.38 -0.43 -13.90 16 3 C -0.28 -7.40 9.87 -15.06 -0.15 -7.54 16 4 H 0.08 2.33 8.06 -52.49 -0.42 1.91 16 5 C 0.04 1.07 5.31 -17.43 -0.09 0.98 16 6 N -0.90 -26.79 13.97 55.49 0.78 -26.02 16 7 Si 0.88 22.18 24.98 -169.99 -4.25 17.93 16 8 H -0.29 -7.02 6.69 56.52 0.38 -6.64 16 9 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 10 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 11 C 0.17 3.12 3.43 -66.09 -0.23 2.90 16 12 H 0.09 1.64 7.95 -51.93 -0.41 1.23 16 13 C -0.15 -2.16 6.66 -24.59 -0.16 -2.33 16 14 C 0.09 1.07 5.04 -2.53 -0.01 1.06 16 15 N -0.61 -9.32 3.33 -171.74 -0.57 -9.89 16 16 C 0.57 9.21 7.64 -12.46 -0.10 9.12 16 17 O -0.54 -10.58 17.05 5.29 0.09 -10.49 16 18 C -0.20 -2.62 5.71 -104.82 -0.60 -3.21 16 19 C 0.00 -0.01 9.66 -39.29 -0.38 -0.39 16 20 C -0.19 -1.83 9.38 -39.65 -0.37 -2.20 16 21 C 0.32 3.37 6.20 -155.28 -0.96 2.41 16 22 N -0.46 -4.11 5.28 -169.29 -0.89 -5.01 16 23 C 0.04 0.28 6.03 -1.90 -0.01 0.27 16 24 C -0.12 -0.61 7.06 -24.87 -0.18 -0.79 16 25 C -0.13 -0.75 6.93 -25.39 -0.18 -0.92 16 26 C 0.03 0.27 6.34 -2.77 -0.02 0.25 16 27 N -0.52 -5.92 8.10 -12.14 -0.10 -6.02 16 28 C 0.15 1.68 9.11 -17.13 -0.16 1.53 16 29 C 0.08 1.50 6.46 -3.06 -0.02 1.48 16 30 H 0.02 0.39 8.00 -51.93 -0.42 -0.03 16 31 H 0.05 1.10 3.37 -51.93 -0.18 0.93 16 32 H 0.03 0.63 6.08 -51.93 -0.32 0.31 16 33 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 34 H 0.08 1.16 7.23 -51.93 -0.38 0.78 16 35 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.08 0.82 6.09 -51.93 -0.32 0.50 16 37 H 0.07 0.74 7.35 -51.93 -0.38 0.36 16 38 H 0.15 1.57 7.95 -52.49 -0.42 1.15 16 39 H 0.14 1.05 8.01 -52.49 -0.42 0.63 16 40 H 0.09 0.48 8.10 -51.93 -0.42 0.06 16 41 H 0.06 0.40 7.99 -51.93 -0.42 -0.01 16 42 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 44 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.09 0.79 6.48 -51.93 -0.34 0.45 16 47 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.17 1.71 4.59 -52.49 -0.24 1.47 16 49 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 50 H 0.07 1.45 5.93 -51.93 -0.31 1.14 16 LS Contribution 383.76 15.07 5.78 5.78 Total: -1.00 -32.68 383.76 -10.19 -42.87 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -7.49 Total: -0.63 kcal Atomic # 6 Polarization: 8.48 SS G_CDS: -3.11 Total: 5.37 kcal Atomic # 7 Polarization: -59.62 SS G_CDS: -1.21 Total: -60.84 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.09 Total: -10.49 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.25 Total: 17.93 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.68 -10.19 -42.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972557242.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.937 kcal (2) G-P(sol) polarization free energy of solvation -32.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds