Wall clock time and date at job start Wed Apr 1 2020 02:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36937 * 119.99950 * 2 1 4 4 H 1.08002 * 120.00096 * 141.70894 * 3 2 1 5 5 C 1.38811 * 119.99831 * 321.70704 * 3 2 1 6 6 N 1.31622 * 120.00012 * 159.00321 * 5 3 2 7 7 Si 1.86797 * 120.00032 * 339.00666 * 5 3 2 8 8 H 1.48506 * 109.47105 * 95.31775 * 7 5 3 9 9 H 1.48496 * 109.47343 * 215.31112 * 7 5 3 10 10 H 1.48501 * 109.47531 * 335.31621 * 7 5 3 11 11 C 1.46504 * 120.00282 * 179.97438 * 2 1 3 12 12 H 1.08997 * 110.64240 * 176.86028 * 11 2 1 13 13 C 1.55148 * 110.71923 * 300.00692 * 11 2 1 14 14 C 1.54910 * 101.58336 * 153.86181 * 13 11 2 15 15 N 1.47420 * 104.82966 * 322.99280 * 14 13 11 16 16 C 1.34780 * 125.64811 * 204.08920 * 15 14 13 17 17 O 1.21588 * 120.00355 * 184.89808 * 16 15 14 18 18 C 1.47542 * 119.99926 * 4.90461 * 16 15 14 19 19 C 1.40346 * 120.47566 * 152.22051 * 18 16 15 20 20 C 1.36862 * 118.49139 * 179.97438 * 19 18 16 21 21 C 1.39398 * 119.37750 * 0.02562 * 20 19 18 22 22 N 1.38460 * 119.53611 * 180.02562 * 21 20 19 23 23 C 1.48536 * 110.99946 * 62.60228 * 22 21 20 24 24 C 1.54935 * 103.22616 * 159.71774 * 23 22 21 25 25 C 1.54593 * 102.92384 * 322.58783 * 24 23 22 26 26 C 1.47895 * 110.99815 * 179.97438 * 22 21 20 27 27 N 1.32593 * 120.92438 * 359.97438 * 21 20 19 28 28 C 1.31676 * 121.63727 * 0.02562 * 27 21 20 29 29 C 1.47016 * 108.70556 * 24.35035 * 15 14 13 30 30 H 1.08997 * 109.47476 * 267.66552 * 1 2 3 31 31 H 1.09004 * 109.47061 * 27.67359 * 1 2 3 32 32 H 1.08999 * 109.46460 * 147.66659 * 1 2 3 33 33 H 0.97002 * 119.99759 * 180.02562 * 6 5 3 34 34 H 1.09001 * 111.01087 * 35.78702 * 13 11 2 35 35 H 1.09004 * 111.03886 * 271.94877 * 13 11 2 36 36 H 1.08996 * 110.37113 * 204.15077 * 14 13 11 37 37 H 1.09005 * 110.45587 * 81.87404 * 14 13 11 38 38 H 1.07995 * 120.75847 * 0.02562 * 19 18 16 39 39 H 1.08000 * 120.30706 * 180.29610 * 20 19 18 40 40 H 1.09003 * 110.66871 * 278.15314 * 23 22 21 41 41 H 1.08996 * 110.66683 * 41.28625 * 23 22 21 42 42 H 1.08995 * 110.72496 * 204.22513 * 24 23 22 43 43 H 1.09002 * 110.72336 * 80.94877 * 24 23 22 44 44 H 1.08995 * 110.30731 * 263.04128 * 25 24 23 45 45 H 1.09001 * 110.30867 * 140.87386 * 25 24 23 46 46 H 1.08997 * 109.92002 * 333.50922 * 26 22 21 47 47 H 1.09002 * 109.91468 * 94.80797 * 26 22 21 48 48 H 1.07999 * 119.74251 * 179.97438 * 28 27 21 49 49 H 1.09000 * 109.88298 * 118.13634 * 29 15 14 50 50 H 1.09004 * 109.88453 * 239.29773 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.0555 1.2865 0.5796 5 6 1.6796 2.2587 -0.7450 6 7 2.0600 3.4832 -0.4479 7 14 0.5070 1.9645 -2.1690 8 1 -0.8919 2.1408 -1.7029 9 1 0.7931 2.9364 -3.2547 10 1 0.6875 0.5825 -2.6816 11 6 2.1976 -1.2687 0.0006 12 1 3.2717 -1.0922 -0.0554 13 6 1.8436 -2.1064 1.2576 14 6 2.1172 -3.5471 0.7584 15 7 1.6780 -3.5487 -0.6488 16 6 1.2951 -4.6336 -1.3510 17 8 1.0364 -4.5315 -2.5346 18 6 1.1897 -5.9450 -0.6833 19 6 0.2934 -6.9153 -1.1576 20 6 0.2292 -8.1180 -0.5077 21 6 1.0485 -8.3427 0.5975 22 7 0.9866 -9.5586 1.2571 23 6 1.3921 -10.6716 0.3610 24 6 1.7695 -11.8032 1.3496 25 6 2.4506 -11.0379 2.5074 26 6 1.9310 -9.5930 2.3947 27 7 1.8869 -7.4088 1.0253 28 6 1.9799 -6.2385 0.4290 29 6 1.7327 -2.1719 -1.1614 30 1 -0.3634 -0.0419 1.0268 31 1 -0.3633 0.9101 -0.4773 32 1 -0.3632 -0.8684 -0.5497 33 1 1.7311 4.2329 -0.9682 34 1 0.7957 -1.9795 1.5294 35 1 2.4953 -1.8522 2.0935 36 1 1.5375 -4.2658 1.3376 37 1 3.1806 -3.7776 0.8242 38 1 -0.3309 -6.7177 -2.0163 39 1 -0.4467 -8.8874 -0.8506 40 1 0.5603 -10.9769 -0.2739 41 1 2.2532 -10.3852 -0.2427 42 1 2.4657 -12.5029 0.8874 43 1 0.8774 -12.3211 1.7018 44 1 3.5340 -11.0604 2.3899 45 1 2.1643 -11.4697 3.4664 46 1 2.7622 -8.9129 2.2081 47 1 1.4163 -9.3113 3.3133 48 1 2.6730 -5.4999 0.8036 49 1 2.4419 -2.1116 -1.9869 50 1 0.7431 -1.8615 -1.4967 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972557242.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:45:19 Heat of formation + Delta-G solvation = 47.129532 kcal Electronic energy + Delta-G solvation = -30138.750340 eV Core-core repulsion = 26166.977390 eV Total energy + Delta-G solvation = -3971.772950 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.17618 -41.04667 -39.35881 -38.76204 -36.74008 -34.19694 -33.82405 -33.55318 -31.85059 -30.73280 -29.93663 -29.23771 -28.11546 -26.11580 -25.02323 -24.59385 -23.65510 -22.29882 -21.62760 -21.16173 -20.77883 -19.05866 -18.71203 -18.61783 -17.83319 -17.59460 -17.12360 -16.76964 -16.32253 -15.91878 -15.76000 -15.54712 -15.40341 -14.90204 -14.72736 -14.62215 -14.52597 -14.36946 -14.12831 -14.03726 -13.75838 -13.66505 -13.47855 -13.21638 -13.13963 -13.07610 -12.58955 -12.41670 -12.32306 -12.23413 -12.11318 -12.06607 -11.66453 -11.54550 -11.46070 -11.36796 -11.14341 -10.91974 -10.68164 -10.49544 -9.79836 -9.27163 -8.81044 -8.23950 -5.64907 -0.44048 0.15551 1.26342 1.39153 1.48635 1.59022 1.81016 2.37119 2.41881 2.72759 3.01923 3.18776 3.27890 3.38912 3.61111 3.66521 3.77606 3.82936 3.89969 3.99353 4.01038 4.15771 4.21610 4.22331 4.32830 4.36774 4.45440 4.52463 4.56702 4.57291 4.65819 4.67354 4.78380 4.84619 4.89513 4.90709 4.95132 4.96566 4.97687 5.03786 5.14997 5.17032 5.22548 5.26094 5.31308 5.34097 5.56768 5.90135 5.99412 6.16439 6.38694 6.72418 6.90414 6.96585 7.55629 7.99053 8.94803 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.027848 B = 0.002201 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.211660 B =12717.917207 C =13358.970368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.608 5.608 3 C -0.257 4.257 4 H 0.056 0.944 5 C -0.015 4.015 6 N -0.942 5.942 7 Si 0.939 3.061 8 H -0.276 1.276 9 H -0.309 1.309 10 H -0.266 1.266 11 C 0.165 3.835 12 H 0.087 0.913 13 C -0.138 4.138 14 C 0.094 3.906 15 N -0.606 5.606 16 C 0.574 3.426 17 O -0.586 6.586 18 C -0.220 4.220 19 C -0.005 4.005 20 C -0.180 4.180 21 C 0.318 3.682 22 N -0.469 5.469 23 C 0.039 3.961 24 C -0.118 4.118 25 C -0.130 4.130 26 C 0.031 3.969 27 N -0.530 5.530 28 C 0.155 3.845 29 C 0.092 3.908 30 H 0.035 0.965 31 H 0.027 0.973 32 H 0.049 0.951 33 H 0.264 0.736 34 H 0.070 0.930 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.146 0.854 39 H 0.166 0.834 40 H 0.105 0.895 41 H 0.051 0.949 42 H 0.094 0.906 43 H 0.084 0.916 44 H 0.075 0.925 45 H 0.085 0.915 46 H 0.072 0.928 47 H 0.078 0.922 48 H 0.189 0.811 49 H 0.054 0.946 50 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.012 -33.827 6.138 34.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.331 5.331 3 C -0.387 4.387 4 H 0.073 0.927 5 C -0.212 4.212 6 N -0.586 5.586 7 Si 0.768 3.232 8 H -0.203 1.203 9 H -0.237 1.237 10 H -0.191 1.191 11 C 0.057 3.943 12 H 0.106 0.894 13 C -0.177 4.177 14 C -0.028 4.028 15 N -0.338 5.338 16 C 0.365 3.635 17 O -0.467 6.467 18 C -0.227 4.227 19 C -0.032 4.032 20 C -0.202 4.202 21 C 0.086 3.914 22 N -0.186 5.186 23 C -0.085 4.085 24 C -0.156 4.156 25 C -0.169 4.169 26 C -0.096 4.096 27 N -0.244 5.244 28 C -0.003 4.003 29 C -0.033 4.033 30 H 0.053 0.947 31 H 0.045 0.955 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.122 0.878 38 H 0.164 0.836 39 H 0.184 0.816 40 H 0.124 0.876 41 H 0.070 0.930 42 H 0.112 0.888 43 H 0.103 0.897 44 H 0.094 0.906 45 H 0.103 0.897 46 H 0.090 0.910 47 H 0.096 0.904 48 H 0.205 0.795 49 H 0.072 0.928 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.199 -33.955 6.384 34.571 hybrid contribution -0.491 1.344 -1.974 2.438 sum -1.690 -32.611 4.410 32.951 Atomic orbital electron populations 1.21351 0.84007 0.98903 0.99416 1.44101 1.01178 1.01567 1.86237 1.18713 1.09225 0.88266 1.22493 0.92655 1.26058 1.00355 0.95187 0.99624 1.69953 1.48739 0.98805 1.41098 0.85952 0.79078 0.77511 0.80613 1.20344 1.23724 1.19105 1.21657 0.96545 0.84015 0.92082 0.89439 1.23215 1.03035 0.92888 0.98599 1.22949 1.01353 0.98558 0.79930 1.48417 1.64548 1.06552 1.14238 1.18080 0.76376 0.83640 0.85429 1.90761 1.52913 1.86215 1.16842 1.20621 1.05407 0.95352 1.01294 1.21375 0.93707 0.90975 0.97103 1.21434 1.02639 0.98986 0.97178 1.20461 0.89316 0.92006 0.89656 1.61785 1.47614 1.00599 1.08640 1.23489 1.00708 0.89114 0.95196 1.22541 1.01727 0.96476 0.94894 1.22456 1.00758 0.93298 1.00338 1.22951 0.95107 0.98627 0.92917 1.67763 1.20624 1.02970 1.33033 1.23627 0.95006 0.93104 0.88612 1.22531 1.00890 0.81084 0.98776 0.94662 0.95456 0.93257 0.92709 0.91084 0.88065 0.88323 0.87825 0.83580 0.81641 0.87640 0.93019 0.88792 0.89687 0.90587 0.89655 0.90954 0.90383 0.79455 0.92776 0.93150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.47 8.35 127.77 1.07 5.54 16 2 N -0.61 -27.29 2.49 -696.14 -1.73 -29.02 16 3 C -0.26 -14.01 9.87 84.03 0.83 -13.18 16 4 H 0.06 3.26 8.06 -2.91 -0.02 3.24 16 5 C -0.01 -0.86 5.31 84.86 0.45 -0.41 16 6 N -0.94 -57.83 13.97 21.65 0.30 -57.53 16 7 Si 0.94 46.76 24.98 68.60 1.71 48.47 16 8 H -0.28 -13.17 6.69 99.48 0.67 -12.50 16 9 H -0.31 -15.63 7.11 99.48 0.71 -14.92 16 10 H -0.27 -13.04 7.11 99.48 0.71 -12.33 16 11 C 0.16 5.87 3.43 46.18 0.16 6.03 16 12 H 0.09 3.15 7.95 -2.39 -0.02 3.13 16 13 C -0.14 -3.63 6.66 31.98 0.21 -3.42 16 14 C 0.09 1.98 5.04 86.86 0.44 2.42 16 15 N -0.61 -17.79 3.33 -815.53 -2.71 -20.50 16 16 C 0.57 17.98 7.64 86.70 0.66 18.65 16 17 O -0.59 -23.10 17.05 -3.99 -0.07 -23.17 16 18 C -0.22 -5.37 5.71 -19.99 -0.11 -5.48 16 19 C -0.01 -0.11 9.66 22.46 0.22 0.10 16 20 C -0.18 -3.12 9.38 22.23 0.21 -2.91 16 21 C 0.32 5.97 6.20 133.25 0.83 6.80 16 22 N -0.47 -7.14 5.28 -689.53 -3.64 -10.78 16 23 C 0.04 0.40 6.03 86.65 0.52 0.92 16 24 C -0.12 -0.79 7.06 31.80 0.22 -0.57 16 25 C -0.13 -1.10 6.93 31.46 0.22 -0.89 16 26 C 0.03 0.43 6.34 86.44 0.55 0.98 16 27 N -0.53 -10.85 8.10 -192.33 -1.56 -12.41 16 28 C 0.15 3.17 9.11 85.04 0.77 3.94 16 29 C 0.09 3.29 6.46 86.73 0.56 3.85 16 30 H 0.04 1.35 8.00 -2.39 -0.02 1.34 16 31 H 0.03 1.25 3.37 -2.39 -0.01 1.24 16 32 H 0.05 1.88 6.08 -2.39 -0.01 1.86 16 33 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 34 H 0.07 1.98 7.23 -2.39 -0.02 1.96 16 35 H 0.10 2.37 8.14 -2.38 -0.02 2.35 16 36 H 0.10 1.75 6.09 -2.39 -0.01 1.74 16 37 H 0.10 1.66 7.35 -2.38 -0.02 1.65 16 38 H 0.15 3.04 7.95 -2.91 -0.02 3.01 16 39 H 0.17 1.96 8.01 -2.91 -0.02 1.94 16 40 H 0.11 0.77 8.10 -2.39 -0.02 0.75 16 41 H 0.05 0.60 7.99 -2.39 -0.02 0.58 16 42 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 43 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 44 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 45 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 46 H 0.07 1.21 6.48 -2.39 -0.02 1.19 16 47 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 48 H 0.19 3.10 4.59 -2.91 -0.01 3.08 16 49 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 50 H 0.05 2.02 5.93 -2.38 -0.01 2.01 16 Total: -1.00 -72.51 383.76 1.02 -71.49 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: 0.91 Total: 11.06 kcal Atomic # 6 Polarization: 14.58 SS G_CDS: 7.80 Total: 22.38 kcal Atomic # 7 Polarization: -120.90 SS G_CDS: -9.34 Total: -130.24 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: -0.07 Total: -23.17 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 1.71 Total: 48.47 kcal Total: -72.51 1.02 -71.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972557242.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.618 kcal (2) G-P(sol) polarization free energy of solvation -72.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds