Wall clock time and date at job start Wed Apr 1 2020 03:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 119.99820 * 2 1 4 4 H 1.48503 * 109.46826 * 269.99525 * 3 2 1 5 5 H 1.48495 * 109.47256 * 29.99340 * 3 2 1 6 6 H 1.48491 * 109.47211 * 149.99802 * 3 2 1 7 7 C 1.38813 * 119.99911 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99639 * 170.58370 * 7 2 1 9 9 N 1.36933 * 120.00435 * 350.58564 * 7 2 1 10 10 C 1.48160 * 127.83751 * 164.37344 * 9 7 2 11 11 C 1.54379 * 104.54552 * 140.32570 * 10 9 7 12 12 H 1.08996 * 111.44204 * 264.07572 * 11 10 9 13 13 C 1.54160 * 104.99436 * 24.23754 * 11 10 9 14 14 H 1.08999 * 111.36770 * 239.45532 * 13 11 10 15 15 C 1.48143 * 127.83162 * 344.39716 * 9 7 2 16 16 C 1.53028 * 109.71557 * 116.38180 * 13 11 10 17 17 H 1.09005 * 109.64114 * 179.97438 * 16 13 11 18 18 C 1.53039 * 109.21859 * 300.71416 * 16 13 11 19 19 C 1.52936 * 110.01597 * 59.32430 * 18 16 13 20 20 C 1.53221 * 109.01714 * 141.37936 * 11 10 9 21 21 H 1.09000 * 110.49847 * 68.07994 * 20 11 10 22 22 N 1.47690 * 108.05780 * 189.08681 * 20 11 10 23 23 C 1.34772 * 122.07315 * 238.75690 * 22 20 11 24 24 O 1.21289 * 119.99739 * 359.97438 * 23 22 20 25 25 C 1.50698 * 120.00375 * 179.97438 * 23 22 20 26 26 C 1.55926 * 115.92023 * 297.93839 * 25 23 22 27 27 C 1.54581 * 104.64431 * 199.96877 * 26 25 23 28 28 C 1.55929 * 104.64398 * 359.97438 * 27 26 25 29 29 C 1.55929 * 105.22770 * 289.53297 * 28 27 26 30 30 C 1.55928 * 115.92310 * 62.05981 * 25 23 22 31 31 C 1.56950 * 100.65102 * 33.78022 * 28 27 26 32 32 C 1.47645 * 115.86131 * 58.77671 * 22 20 11 33 33 H 0.96999 * 119.99939 * 0.02562 * 1 2 3 34 34 H 1.08996 * 110.42364 * 259.08877 * 10 9 7 35 35 H 1.08996 * 110.42226 * 21.43742 * 10 9 7 36 36 H 1.08997 * 110.39437 * 100.58909 * 15 9 7 37 37 H 1.08996 * 110.39953 * 338.18125 * 15 9 7 38 38 H 1.09005 * 109.38045 * 179.49228 * 18 16 13 39 39 H 1.09000 * 109.38192 * 299.26626 * 18 16 13 40 40 H 1.08991 * 109.45521 * 240.65357 * 19 18 16 41 41 H 1.08996 * 109.45081 * 120.71913 * 19 18 16 42 42 H 1.09004 * 110.40403 * 318.75786 * 26 25 23 43 43 H 1.08996 * 110.40606 * 81.17237 * 26 25 23 44 44 H 1.09005 * 110.40297 * 241.20602 * 27 26 25 45 45 H 1.09004 * 110.50582 * 118.84037 * 27 26 25 46 46 H 1.08995 * 115.92420 * 160.03425 * 28 27 26 47 47 H 1.09003 * 110.40264 * 189.25800 * 29 28 27 48 48 H 1.08998 * 110.40417 * 311.55806 * 29 28 27 49 49 H 1.08999 * 110.40355 * 278.82607 * 30 25 23 50 50 H 1.09003 * 110.40126 * 41.24030 * 30 25 23 51 51 H 1.09003 * 112.02738 * 189.69994 * 31 28 27 52 52 H 1.09003 * 112.09044 * 63.19482 * 31 28 27 53 53 H 1.08995 * 109.99782 * 119.44001 * 32 22 20 54 54 H 1.08995 * 109.99459 * 240.83161 * 32 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5476 1.4403 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0794 -1.2085 -0.1525 9 7 1.3395 -2.3800 0.1950 10 6 1.8190 -3.7549 -0.0787 11 6 1.2932 -4.5922 1.1069 12 1 2.0492 -4.7004 1.8846 13 6 0.0699 -3.8150 1.6326 14 1 0.2003 -3.5277 2.6759 15 6 -0.0304 -2.5684 0.7265 16 6 -1.1937 -4.6597 1.4547 17 1 -2.0577 -4.1093 1.8272 18 6 -1.3770 -4.9857 -0.0293 19 6 -0.1611 -5.7529 -0.5508 20 6 0.8422 -5.9621 0.5896 21 1 1.6999 -6.5438 0.2519 22 7 0.1446 -6.6596 1.6888 23 6 0.5615 -7.8521 2.1583 24 8 1.5380 -8.3859 1.6760 25 6 -0.1855 -8.5223 3.2824 26 6 -0.2234 -7.7456 4.6340 27 6 -0.5611 -8.8200 5.6928 28 6 -0.6961 -10.1445 4.8813 29 6 -2.0122 -9.9892 4.0597 30 6 -1.6689 -8.9000 2.9854 31 6 0.3758 -9.9079 3.7594 32 6 -1.0382 -5.9697 2.2411 33 1 -0.4850 0.8400 -0.0004 34 1 1.4043 -4.1225 -1.0173 35 1 2.9082 -3.7786 -0.1100 36 1 -0.7327 -2.7463 -0.0879 37 1 -0.3350 -1.6989 1.3089 38 1 -2.2716 -5.5950 -0.1579 39 1 -1.4866 -4.0588 -0.5924 40 1 0.3119 -5.1832 -1.3505 41 1 -0.4807 -6.7214 -0.9354 42 1 0.7486 -7.2986 4.8428 43 1 -0.9978 -6.9789 4.6101 44 1 -1.5017 -8.5816 6.1895 45 1 0.2435 -8.9020 6.4236 46 1 -0.5980 -11.0665 5.4543 47 1 -2.2768 -10.9335 3.5838 48 1 -2.8236 -9.6483 4.7028 49 1 -2.3144 -8.0304 3.1085 50 1 -1.7634 -9.3048 1.9777 51 1 0.3205 -10.6631 2.9754 52 1 1.3833 -9.8222 4.1666 53 1 -1.9253 -6.5896 2.1119 54 1 -0.8837 -5.7537 3.2982 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089828380.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:28 Heat of formation + Delta-G solvation = -13.161925 kcal Electronic energy + Delta-G solvation = -32906.332172 eV Core-core repulsion = 29035.485132 eV Total energy + Delta-G solvation = -3870.847040 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 344.221 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.55792 -41.22739 -39.17304 -37.22483 -34.59370 -33.64973 -33.03849 -31.31567 -31.00868 -30.38922 -28.79976 -28.45962 -27.17505 -25.58286 -23.77549 -23.15998 -22.73624 -22.14637 -21.95608 -20.31032 -19.94788 -18.89995 -18.02165 -17.81571 -17.22063 -16.93173 -16.90177 -16.48797 -16.21969 -15.79062 -15.53691 -15.07359 -14.88449 -14.77117 -14.18687 -14.06662 -13.79767 -13.67051 -13.50263 -13.45328 -13.31029 -13.17385 -12.97708 -12.85580 -12.72809 -12.59598 -12.44164 -12.26776 -12.07848 -11.98371 -11.90501 -11.82427 -11.76622 -11.74800 -11.60455 -11.30081 -11.13478 -11.02444 -10.89971 -10.86609 -10.68315 -10.50826 -9.49654 -8.81897 -7.89492 -5.23553 1.45450 1.46173 1.55511 1.57939 1.93971 2.48729 3.27244 3.30762 3.45375 3.53205 3.59441 3.64315 3.71476 3.84442 3.92769 4.10055 4.14872 4.21640 4.22907 4.26683 4.28955 4.31826 4.38754 4.45615 4.52176 4.54699 4.55858 4.59306 4.67117 4.68031 4.74852 4.78869 4.82900 4.89661 4.97166 5.04156 5.05345 5.11710 5.16002 5.18649 5.21113 5.26795 5.26923 5.27445 5.32547 5.37249 5.37894 5.41652 5.48230 5.49078 5.59287 5.71689 5.81755 6.22377 6.52633 7.05700 7.17536 7.71579 8.51184 9.23337 Molecular weight = 344.22amu Principal moments of inertia in cm(-1) A = 0.022756 B = 0.002880 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.126782 B = 9718.471297 C = 9797.305352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.057 4.057 3 Si 0.974 3.026 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.274 1.274 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.620 5.620 10 C 0.125 3.875 11 C -0.092 4.092 12 H 0.056 0.944 13 C -0.091 4.091 14 H 0.063 0.937 15 C 0.168 3.832 16 C -0.084 4.084 17 H 0.103 0.897 18 C -0.111 4.111 19 C -0.124 4.124 20 C 0.157 3.843 21 H 0.080 0.920 22 N -0.598 5.598 23 C 0.541 3.459 24 O -0.592 6.592 25 C -0.104 4.104 26 C -0.109 4.109 27 C -0.113 4.113 28 C -0.096 4.096 29 C -0.111 4.111 30 C -0.106 4.106 31 C -0.102 4.102 32 C 0.116 3.884 33 H 0.249 0.751 34 H 0.042 0.958 35 H 0.036 0.964 36 H 0.024 0.976 37 H 0.043 0.957 38 H 0.085 0.915 39 H 0.058 0.942 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.047 0.953 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.066 0.934 46 H 0.116 0.884 47 H 0.071 0.929 48 H 0.086 0.914 49 H 0.089 0.911 50 H 0.058 0.942 51 H 0.062 0.938 52 H 0.055 0.945 53 H 0.100 0.900 54 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.254 -20.418 10.652 24.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.251 4.251 3 Si 0.802 3.198 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.199 1.199 7 C -0.370 4.370 8 H 0.089 0.911 9 N -0.344 5.344 10 C -0.001 4.001 11 C -0.113 4.113 12 H 0.075 0.925 13 C -0.112 4.112 14 H 0.082 0.918 15 C 0.043 3.957 16 C -0.103 4.103 17 H 0.121 0.879 18 C -0.148 4.148 19 C -0.162 4.162 20 C 0.054 3.946 21 H 0.099 0.901 22 N -0.329 5.329 23 C 0.330 3.670 24 O -0.473 6.473 25 C -0.107 4.107 26 C -0.146 4.146 27 C -0.151 4.151 28 C -0.114 4.114 29 C -0.149 4.149 30 C -0.144 4.144 31 C -0.140 4.140 32 C -0.005 4.005 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.042 0.958 37 H 0.062 0.938 38 H 0.103 0.897 39 H 0.076 0.924 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.066 0.934 43 H 0.106 0.894 44 H 0.105 0.895 45 H 0.084 0.916 46 H 0.134 0.866 47 H 0.090 0.910 48 H 0.105 0.895 49 H 0.107 0.893 50 H 0.077 0.923 51 H 0.081 0.919 52 H 0.074 0.926 53 H 0.118 0.882 54 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.777 -20.434 10.383 24.544 hybrid contribution 1.129 1.469 -0.537 1.929 sum -7.648 -18.965 9.846 22.696 Atomic orbital electron populations 1.70070 1.06144 1.25537 1.57052 1.25607 0.96501 1.00755 1.02257 0.85167 0.77707 0.79436 0.77508 1.21215 1.21652 1.19939 1.19292 0.91101 0.83997 1.42636 0.91124 1.45186 1.14842 1.00521 1.73852 1.22001 0.96854 0.85447 0.95750 1.22279 0.97400 0.93967 0.97666 0.92516 1.22145 0.94317 0.95772 0.98921 0.91845 1.21618 0.85944 0.94100 0.94078 1.21396 0.97916 0.94918 0.96032 0.87900 1.21550 0.97821 1.00216 0.95239 1.21930 0.96345 1.00671 0.97207 1.21127 0.95033 0.91267 0.87212 0.90137 1.48605 1.29738 1.19141 1.35461 1.20352 0.83489 0.80028 0.83081 1.90645 1.29462 1.65481 1.61672 1.22844 0.97556 0.97111 0.93189 1.22662 1.01727 0.98256 0.91984 1.22601 1.02523 0.93436 0.96520 1.23595 0.94228 0.98386 0.95180 1.22975 0.97080 0.98244 0.96585 1.23044 0.91668 1.00170 0.99489 1.23377 0.98483 0.94003 0.98151 1.22399 0.87623 0.92638 0.97879 0.94162 0.94089 0.94533 0.95806 0.93843 0.89663 0.92371 0.91171 0.91013 0.93373 0.89389 0.89462 0.91570 0.86591 0.91011 0.89518 0.89264 0.92293 0.91911 0.92577 0.88179 0.89815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.34 10.88 21.65 0.24 -55.10 16 2 C -0.06 -3.23 5.40 84.86 0.46 -2.77 16 3 Si 0.97 45.71 29.56 68.60 2.03 47.74 16 4 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 5 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 6 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 7 C -0.24 -13.70 10.35 84.03 0.87 -12.83 16 8 H 0.07 3.93 7.85 -2.91 -0.02 3.91 16 9 N -0.62 -31.95 3.38 -688.07 -2.32 -34.28 16 10 C 0.13 5.35 6.53 86.53 0.56 5.91 16 11 C -0.09 -3.34 3.33 -9.86 -0.03 -3.37 16 12 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 13 C -0.09 -3.23 3.14 -9.90 -0.03 -3.26 16 14 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 15 C 0.17 7.78 5.18 86.55 0.45 8.23 16 16 C -0.08 -2.17 2.86 -10.57 -0.03 -2.20 16 17 H 0.10 2.38 8.14 -2.38 -0.02 2.36 16 18 C -0.11 -2.95 5.31 30.59 0.16 -2.79 16 19 C -0.12 -3.52 5.52 30.68 0.17 -3.35 16 20 C 0.16 4.93 3.11 44.95 0.14 5.07 16 21 H 0.08 2.81 7.20 -2.39 -0.02 2.79 16 22 N -0.60 -16.04 2.81 -789.96 -2.22 -18.26 16 23 C 0.54 15.51 7.17 87.66 0.63 16.14 16 24 O -0.59 -22.06 16.10 -3.06 -0.05 -22.11 16 25 C -0.10 -2.09 0.86 -49.53 -0.04 -2.14 16 26 C -0.11 -1.81 5.03 32.15 0.16 -1.65 16 27 C -0.11 -1.38 6.23 32.15 0.20 -1.18 16 28 C -0.10 -1.17 5.14 -7.38 -0.04 -1.21 16 29 C -0.11 -1.18 6.33 32.94 0.21 -0.97 16 30 C -0.11 -1.53 5.13 32.94 0.17 -1.36 16 31 C -0.10 -2.00 5.63 33.35 0.19 -1.81 16 32 C 0.12 2.40 4.59 86.36 0.40 2.80 16 33 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 34 H 0.04 1.71 5.20 -2.39 -0.01 1.70 16 35 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.02 1.15 5.31 -2.39 -0.01 1.14 16 37 H 0.04 2.32 6.54 -2.39 -0.02 2.31 16 38 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 39 H 0.06 1.87 5.79 -2.39 -0.01 1.86 16 40 H 0.07 2.22 5.67 -2.39 -0.01 2.20 16 41 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 43 H 0.09 1.21 5.95 -2.39 -0.01 1.19 16 44 H 0.09 0.77 7.87 -2.38 -0.02 0.75 16 45 H 0.07 0.81 8.14 -2.38 -0.02 0.80 16 46 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 47 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 48 H 0.09 0.65 7.87 -2.39 -0.02 0.63 16 49 H 0.09 1.01 5.95 -2.39 -0.01 0.99 16 50 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 51 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 52 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 53 H 0.10 1.54 5.82 -2.39 -0.01 1.52 16 54 H 0.08 1.57 5.84 -2.39 -0.01 1.55 16 Total: -1.00 -70.07 377.93 3.15 -66.92 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: 0.90 Total: 17.83 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: 4.59 Total: -2.73 kcal Atomic # 7 Polarization: -103.33 SS G_CDS: -4.31 Total: -107.64 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: -0.05 Total: -22.11 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -70.07 3.15 -66.92 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089828380.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.758 kcal (2) G-P(sol) polarization free energy of solvation -70.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds