Wall clock time and date at job start Wed Apr 1 2020 02:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47100 * 67.00634 * 3 2 1 5 5 C 1.36937 * 120.00012 * 273.33123 * 4 3 2 6 6 H 1.08004 * 119.99989 * 187.24484 * 5 4 3 7 7 C 1.38808 * 120.00226 * 7.24149 * 5 4 3 8 8 N 1.31616 * 119.99739 * 25.59431 * 7 5 4 9 9 Si 1.86797 * 120.00094 * 205.59716 * 7 5 4 10 10 H 1.48499 * 109.47364 * 90.00047 * 9 7 5 11 11 H 1.48503 * 109.46942 * 209.99956 * 9 7 5 12 12 H 1.48501 * 109.47254 * 329.99759 * 9 7 5 13 13 S 1.65599 * 119.99910 * 93.33771 * 4 3 2 14 14 O 1.42097 * 106.40435 * 156.45687 * 13 4 3 15 15 O 1.42097 * 106.40441 * 23.53572 * 13 4 3 16 16 C 1.76201 * 107.21484 * 269.99623 * 13 4 3 17 17 C 1.38233 * 120.41276 * 269.71761 * 16 13 4 18 18 N 1.31862 * 120.78469 * 179.75163 * 17 16 13 19 19 C 1.31874 * 121.73575 * 0.53908 * 18 17 16 20 20 C 1.38276 * 120.74969 * 359.73203 * 19 18 17 21 21 Br 1.89106 * 120.42938 * 179.97438 * 20 19 18 22 22 C 1.38610 * 120.41723 * 90.00130 * 16 13 4 23 23 H 1.08998 * 109.47101 * 307.00326 * 3 2 1 24 24 H 1.09004 * 109.46747 * 187.00855 * 3 2 1 25 25 H 0.97001 * 119.99914 * 179.97438 * 8 7 5 26 26 H 1.08004 * 119.60963 * 0.03019 * 17 16 13 27 27 H 1.07993 * 119.62775 * 179.75143 * 19 18 17 28 28 H 1.08003 * 120.79286 * 359.95435 * 22 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0965 -0.5386 -1.2714 5 6 3.2604 -1.8895 -1.4243 6 1 3.7292 -2.2792 -2.3159 7 6 2.8240 -2.7582 -0.4335 8 7 1.8483 -2.3990 0.3735 9 14 3.6215 -4.4369 -0.2455 10 1 4.7681 -4.3380 0.6930 11 1 2.6261 -5.4007 0.2889 12 1 4.1042 -4.9066 -1.5690 13 16 3.4508 0.4854 -2.5237 14 8 4.3760 -0.2020 -3.3547 15 8 3.7220 1.7528 -1.9412 16 6 1.9783 0.6785 -3.4719 17 6 1.7083 -0.1735 -4.5264 18 7 0.6062 -0.0387 -5.2378 19 6 -0.2718 0.9117 -4.9833 20 6 -0.0668 1.8047 -3.9476 21 35 -1.3316 3.1646 -3.5911 22 6 1.0791 1.6903 -3.1736 23 1 2.9716 -0.6177 0.8207 24 1 2.9708 1.0209 0.1254 25 1 1.5431 -3.0062 1.0657 26 1 2.4060 -0.9618 -4.7677 27 1 -1.1612 0.9934 -5.5904 28 1 1.2658 2.3731 -2.3579 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044243653.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:49 Heat of formation + Delta-G solvation = 11.889803 kcal Electronic energy + Delta-G solvation = -20166.877442 eV Core-core repulsion = 16778.417678 eV Total energy + Delta-G solvation = -3388.459763 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 344.957 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.82949 -36.94095 -36.15790 -34.73112 -34.63390 -32.95034 -32.00884 -31.84653 -29.36921 -27.72773 -24.36307 -23.76074 -23.10804 -18.89697 -18.29694 -17.57099 -17.02027 -16.51917 -16.40977 -15.84019 -14.90552 -14.57179 -14.04919 -14.00979 -13.71644 -13.19473 -13.03510 -12.58190 -12.38055 -11.95773 -11.68923 -11.60785 -11.24223 -11.23243 -11.04757 -10.99852 -10.72355 -10.62855 -10.46137 -10.43006 -10.30070 -9.99232 -9.73356 -9.29694 -8.86389 -8.69757 -7.02841 -4.31281 0.82526 1.19471 1.37609 1.58849 2.93606 3.01786 3.06032 3.45337 3.73419 3.77952 3.96933 4.29061 4.36870 4.53895 4.75006 4.84751 5.04667 5.16355 5.21304 5.28027 5.72296 5.91557 5.96330 6.13136 6.30510 6.61042 6.66522 6.92213 7.80549 7.90096 8.17947 8.60874 8.70233 9.94948 Molecular weight = 344.96amu Principal moments of inertia in cm(-1) A = 0.017225 B = 0.004763 C = 0.004472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.119486 B = 5877.702683 C = 6259.350593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C 0.235 3.765 3 C 0.221 3.779 4 N -0.786 5.786 5 C -0.233 4.233 6 H 0.134 0.866 7 C 0.030 3.970 8 N -0.822 5.822 9 Si 0.942 3.058 10 H -0.267 1.267 11 H -0.280 1.280 12 H -0.260 1.260 13 S 2.513 3.487 14 O -0.972 6.972 15 O -0.989 6.989 16 C -0.705 4.705 17 C 0.200 3.800 18 N -0.492 5.492 19 C 0.156 3.844 20 C -0.167 4.167 21 Br -0.043 7.043 22 C 0.042 3.958 23 H 0.134 0.866 24 H 0.105 0.895 25 H 0.286 0.714 26 H 0.174 0.826 27 H 0.161 0.839 28 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.093 4.816 -2.658 5.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.148 5.148 2 C -0.084 4.084 3 C 0.092 3.908 4 N -0.608 5.608 5 C -0.383 4.383 6 H 0.151 0.849 7 C -0.184 4.184 8 N -0.461 5.461 9 Si 0.766 3.234 10 H -0.192 1.192 11 H -0.205 1.205 12 H -0.184 1.184 13 S 2.610 3.390 14 O -0.961 6.961 15 O -0.979 6.979 16 C -0.783 4.783 17 C 0.042 3.958 18 N -0.201 5.201 19 C -0.004 4.004 20 C -0.249 4.249 21 Br 0.042 6.958 22 C 0.013 3.987 23 H 0.152 0.848 24 H 0.123 0.877 25 H 0.098 0.902 26 H 0.191 0.809 27 H 0.179 0.821 28 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -3.748 5.399 -3.465 7.430 hybrid contribution -0.067 -0.639 0.477 0.801 sum -3.815 4.759 -2.988 6.792 Atomic orbital electron populations 1.80909 1.13566 1.12419 1.07933 1.29506 0.95625 0.90035 0.93231 1.19088 0.81248 1.00622 0.89864 1.55842 1.70430 1.17143 1.17375 1.20444 1.29526 0.80843 1.07511 0.84911 1.25748 0.94757 1.00996 0.96865 1.69945 1.20330 1.38017 1.17779 0.85637 0.78957 0.78836 0.79973 1.19173 1.20534 1.18353 1.13014 0.78505 0.74327 0.73117 1.93373 1.61592 1.73274 1.67877 1.93359 1.85479 1.42639 1.76390 1.33727 1.28008 1.03071 1.13472 1.22654 0.91818 0.94166 0.87121 1.67888 1.03356 1.19807 1.29060 1.22894 0.97164 0.88058 0.92239 1.22948 0.98123 1.00350 1.03494 1.96668 1.55324 1.48374 1.95477 1.21211 0.89171 0.93427 0.94849 0.84821 0.87688 0.90238 0.80875 0.82146 0.83396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.59 18.54 42.15 0.78 -9.81 15 2 C 0.24 4.91 13.29 -20.76 -0.28 4.63 15 3 C 0.22 4.13 5.45 -6.83 -0.04 4.09 15 4 N -0.79 -15.93 2.88 -62.77 -0.18 -16.11 15 5 C -0.23 -4.85 9.47 -15.06 -0.14 -4.99 15 6 H 0.13 2.70 7.22 -52.48 -0.38 2.33 15 7 C 0.03 0.61 4.90 -17.43 -0.09 0.53 15 8 N -0.82 -17.41 8.99 55.49 0.50 -16.91 15 9 Si 0.94 16.21 29.62 -169.99 -5.04 11.17 15 10 H -0.27 -4.51 7.11 56.52 0.40 -4.11 15 11 H -0.28 -4.95 7.11 56.52 0.40 -4.55 15 12 H -0.26 -4.46 7.11 56.52 0.40 -4.06 15 13 S 2.51 51.49 5.67 -107.50 -0.61 50.88 15 14 O -0.97 -21.56 16.08 -57.18 -0.92 -22.48 15 15 O -0.99 -21.11 15.93 -57.18 -0.91 -22.02 15 16 C -0.71 -13.82 5.99 -39.45 -0.24 -14.05 15 17 C 0.20 3.79 10.69 -17.54 -0.19 3.60 15 18 N -0.49 -8.98 10.36 -13.23 -0.14 -9.11 15 19 C 0.16 2.58 10.95 -17.52 -0.19 2.38 15 20 C -0.17 -2.86 6.25 -39.37 -0.25 -3.11 15 21 Br -0.04 -0.62 33.74 -68.01 -2.29 -2.91 15 22 C 0.04 0.78 9.42 -39.25 -0.37 0.41 15 23 H 0.13 2.39 6.47 -51.93 -0.34 2.05 15 24 H 0.11 1.70 6.95 -51.93 -0.36 1.34 15 25 H 0.29 5.81 8.31 -40.82 -0.34 5.47 15 26 H 0.17 3.04 7.62 -52.48 -0.40 2.64 15 27 H 0.16 2.12 8.06 -52.49 -0.42 1.70 15 28 H 0.15 2.66 7.71 -52.48 -0.40 2.25 15 LS Contribution 291.86 15.07 4.40 4.40 Total: -1.00 -26.72 291.86 -7.62 -34.34 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -1.44 Total: 5.06 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: -1.77 Total: -6.50 kcal Atomic # 7 Polarization: -52.91 SS G_CDS: 0.96 Total: -51.95 kcal Atomic # 8 Polarization: -42.66 SS G_CDS: -1.83 Total: -44.49 kcal Atomic # 14 Polarization: 16.21 SS G_CDS: -5.04 Total: 11.17 kcal Atomic # 16 Polarization: 51.49 SS G_CDS: -0.61 Total: 50.88 kcal Atomic # 35 Polarization: -0.62 SS G_CDS: -2.29 Total: -2.91 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -26.72 -7.62 -34.34 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044243653.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.232 kcal (2) G-P(sol) polarization free energy of solvation -26.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds