Wall clock time and date at job start Wed Apr 1 2020 02:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47100 * 67.00634 * 3 2 1 5 5 C 1.36937 * 120.00012 * 273.33123 * 4 3 2 6 6 H 1.08004 * 119.99989 * 187.24484 * 5 4 3 7 7 C 1.38808 * 120.00226 * 7.24149 * 5 4 3 8 8 N 1.31616 * 119.99739 * 25.59431 * 7 5 4 9 9 Si 1.86797 * 120.00094 * 205.59716 * 7 5 4 10 10 H 1.48499 * 109.47364 * 90.00047 * 9 7 5 11 11 H 1.48503 * 109.46942 * 209.99956 * 9 7 5 12 12 H 1.48501 * 109.47254 * 329.99759 * 9 7 5 13 13 S 1.65599 * 119.99910 * 93.33771 * 4 3 2 14 14 O 1.42097 * 106.40435 * 156.45687 * 13 4 3 15 15 O 1.42097 * 106.40441 * 23.53572 * 13 4 3 16 16 C 1.76201 * 107.21484 * 269.99623 * 13 4 3 17 17 C 1.38233 * 120.41276 * 269.71761 * 16 13 4 18 18 N 1.31862 * 120.78469 * 179.75163 * 17 16 13 19 19 C 1.31874 * 121.73575 * 0.53908 * 18 17 16 20 20 C 1.38276 * 120.74969 * 359.73203 * 19 18 17 21 21 Br 1.89106 * 120.42938 * 179.97438 * 20 19 18 22 22 C 1.38610 * 120.41723 * 90.00130 * 16 13 4 23 23 H 1.08998 * 109.47101 * 307.00326 * 3 2 1 24 24 H 1.09004 * 109.46747 * 187.00855 * 3 2 1 25 25 H 0.97001 * 119.99914 * 179.97438 * 8 7 5 26 26 H 1.08004 * 119.60963 * 0.03019 * 17 16 13 27 27 H 1.07993 * 119.62775 * 179.75143 * 19 18 17 28 28 H 1.08003 * 120.79286 * 359.95435 * 22 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0965 -0.5386 -1.2714 5 6 3.2604 -1.8895 -1.4243 6 1 3.7292 -2.2792 -2.3159 7 6 2.8240 -2.7582 -0.4335 8 7 1.8483 -2.3990 0.3735 9 14 3.6215 -4.4369 -0.2455 10 1 4.7681 -4.3380 0.6930 11 1 2.6261 -5.4007 0.2889 12 1 4.1042 -4.9066 -1.5690 13 16 3.4508 0.4854 -2.5237 14 8 4.3760 -0.2020 -3.3547 15 8 3.7220 1.7528 -1.9412 16 6 1.9783 0.6785 -3.4719 17 6 1.7083 -0.1735 -4.5264 18 7 0.6062 -0.0387 -5.2378 19 6 -0.2718 0.9117 -4.9833 20 6 -0.0668 1.8047 -3.9476 21 35 -1.3316 3.1646 -3.5911 22 6 1.0791 1.6903 -3.1736 23 1 2.9716 -0.6177 0.8207 24 1 2.9708 1.0209 0.1254 25 1 1.5431 -3.0062 1.0657 26 1 2.4060 -0.9618 -4.7677 27 1 -1.1612 0.9934 -5.5904 28 1 1.2658 2.3731 -2.3579 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044243653.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:49 Heat of formation + Delta-G solvation = -4.924205 kcal Electronic energy + Delta-G solvation = -20167.606552 eV Core-core repulsion = 16778.417678 eV Total energy + Delta-G solvation = -3389.188874 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 344.957 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.22883 -38.52047 -37.83752 -36.42210 -36.30545 -34.31940 -33.58246 -33.25651 -30.69416 -29.28317 -25.94393 -25.18221 -24.53274 -20.47343 -19.88661 -19.08076 -18.56982 -18.04160 -17.86032 -17.35590 -16.46110 -16.08809 -15.42641 -15.41902 -15.30093 -14.76949 -14.46758 -14.14549 -13.81545 -13.54524 -13.28401 -13.23920 -12.83752 -12.71167 -12.59379 -12.51888 -12.21292 -12.12235 -12.02940 -11.83190 -11.67629 -11.51491 -11.20061 -10.73324 -10.28338 -10.17287 -8.57684 -5.92838 -0.60117 -0.27466 -0.15928 0.27244 1.55691 1.62885 1.70922 1.88778 2.27571 2.29450 2.37098 2.71348 2.81060 3.13369 3.22031 3.47973 3.54550 3.63103 3.76307 3.89995 4.21880 4.43059 4.58985 4.67469 4.82364 5.15405 5.20656 5.36077 6.23211 6.49470 6.60771 7.03173 7.06549 8.40067 Molecular weight = 344.96amu Principal moments of inertia in cm(-1) A = 0.017225 B = 0.004763 C = 0.004472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.119486 B = 5877.702683 C = 6259.350593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C 0.249 3.751 3 C 0.218 3.782 4 N -0.792 5.792 5 C -0.254 4.254 6 H 0.132 0.868 7 C 0.008 3.992 8 N -0.845 5.845 9 Si 0.996 3.004 10 H -0.259 1.259 11 H -0.286 1.286 12 H -0.260 1.260 13 S 2.530 3.470 14 O -0.991 6.991 15 O -1.000 7.000 16 C -0.721 4.721 17 C 0.190 3.810 18 N -0.500 5.500 19 C 0.159 3.841 20 C -0.174 4.174 21 Br -0.014 7.014 22 C 0.030 3.970 23 H 0.143 0.857 24 H 0.130 0.870 25 H 0.287 0.713 26 H 0.180 0.820 27 H 0.196 0.804 28 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.427 4.898 -2.878 6.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.183 5.183 2 C -0.070 4.070 3 C 0.089 3.911 4 N -0.614 5.614 5 C -0.403 4.403 6 H 0.149 0.851 7 C -0.204 4.204 8 N -0.484 5.484 9 Si 0.818 3.182 10 H -0.183 1.183 11 H -0.212 1.212 12 H -0.183 1.183 13 S 2.629 3.371 14 O -0.981 6.981 15 O -0.990 6.990 16 C -0.801 4.801 17 C 0.032 3.968 18 N -0.210 5.210 19 C 0.000 4.000 20 C -0.256 4.256 21 Br 0.070 6.930 22 C 0.001 3.999 23 H 0.161 0.839 24 H 0.147 0.853 25 H 0.098 0.902 26 H 0.197 0.803 27 H 0.213 0.787 28 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -4.063 5.486 -3.673 7.752 hybrid contribution -0.058 -0.552 0.481 0.735 sum -4.121 4.934 -3.191 7.177 Atomic orbital electron populations 1.80898 1.14618 1.13739 1.09091 1.29904 0.95999 0.88929 0.92163 1.19370 0.80019 1.02126 0.89566 1.55747 1.70869 1.17011 1.17728 1.20600 1.30517 0.81192 1.08005 0.85085 1.26336 0.94610 1.03213 0.96195 1.69992 1.21148 1.38931 1.18299 0.84840 0.78094 0.75432 0.79813 1.18349 1.21200 1.18345 1.12230 0.78155 0.73827 0.72899 1.93341 1.62559 1.73718 1.68500 1.93335 1.85801 1.43127 1.76706 1.33511 1.27975 1.04282 1.14313 1.22823 0.92423 0.94336 0.87182 1.67939 1.03419 1.20528 1.29075 1.23498 0.97554 0.86911 0.92008 1.23151 0.98209 1.01141 1.03134 1.96691 1.53880 1.47007 1.95403 1.21358 0.89812 0.93372 0.95326 0.83925 0.85269 0.90175 0.80313 0.78716 0.83169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -22.55 18.54 20.01 0.37 -22.17 15 2 C 0.25 10.24 13.29 89.44 1.19 11.42 15 3 C 0.22 7.97 5.45 84.58 0.46 8.43 15 4 N -0.79 -31.68 2.88 -352.52 -1.02 -32.70 15 5 C -0.25 -10.45 9.47 84.03 0.80 -9.65 15 6 H 0.13 5.33 7.22 -2.91 -0.02 5.31 15 7 C 0.01 0.32 4.90 84.86 0.42 0.74 15 8 N -0.84 -35.28 8.99 21.65 0.19 -35.08 15 9 Si 1.00 32.37 29.62 68.60 2.03 34.40 15 10 H -0.26 -8.06 7.11 99.48 0.71 -7.36 15 11 H -0.29 -9.55 7.11 99.48 0.71 -8.84 15 12 H -0.26 -8.37 7.11 99.48 0.71 -7.66 15 13 S 2.53 102.69 5.67 -56.49 -0.32 102.37 15 14 O -0.99 -43.87 16.08 -128.00 -2.06 -45.93 15 15 O -1.00 -41.98 15.93 -128.00 -2.04 -44.02 15 16 C -0.72 -27.90 5.99 22.36 0.13 -27.77 15 17 C 0.19 7.09 10.69 84.69 0.90 8.00 15 18 N -0.50 -17.59 10.36 -195.77 -2.03 -19.62 15 19 C 0.16 4.94 10.95 84.70 0.93 5.87 15 20 C -0.17 -5.67 6.25 22.40 0.14 -5.53 15 21 Br -0.01 -0.38 33.74 -20.37 -0.69 -1.07 15 22 C 0.03 1.08 9.42 22.48 0.21 1.29 15 23 H 0.14 4.97 6.47 -2.39 -0.02 4.96 15 24 H 0.13 4.04 6.95 -2.38 -0.02 4.02 15 25 H 0.29 11.50 8.31 -92.71 -0.77 10.73 15 26 H 0.18 6.27 7.62 -2.91 -0.02 6.25 15 27 H 0.20 4.54 8.06 -2.91 -0.02 4.52 15 28 H 0.15 5.29 7.71 -2.91 -0.02 5.27 15 Total: -1.00 -54.66 291.86 0.86 -53.80 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: 1.23 Total: 17.21 kcal Atomic # 6 Polarization: -12.38 SS G_CDS: 5.18 Total: -7.20 kcal Atomic # 7 Polarization: -107.09 SS G_CDS: -2.48 Total: -109.57 kcal Atomic # 8 Polarization: -85.85 SS G_CDS: -4.10 Total: -89.95 kcal Atomic # 14 Polarization: 32.37 SS G_CDS: 2.03 Total: 34.40 kcal Atomic # 16 Polarization: 102.69 SS G_CDS: -0.32 Total: 102.37 kcal Atomic # 35 Polarization: -0.38 SS G_CDS: -0.69 Total: -1.07 kcal Total: -54.66 0.86 -53.80 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044243653.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.877 kcal (2) G-P(sol) polarization free energy of solvation -54.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds