Wall clock time and date at job start Wed Apr 1 2020 02:58:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31634 * 1
3 3 Si 1.86801 * 119.99675 * 2 1
4 4 H 1.48500 * 109.46990 * 180.02562 * 3 2 1
5 5 H 1.48494 * 109.47522 * 300.00351 * 3 2 1
6 6 H 1.48500 * 109.47073 * 60.00717 * 3 2 1
7 7 C 1.38796 * 119.99941 * 180.02562 * 2 1 3
8 8 H 1.08001 * 119.99554 * 179.97438 * 7 2 1
9 9 S 1.76200 * 120.00095 * 359.97438 * 7 2 1
10 10 C 1.80999 * 99.99730 * 179.97438 * 9 7 2
11 11 C 1.50702 * 109.46903 * 179.97438 * 10 9 7
12 12 O 1.21283 * 120.00262 * 0.02562 * 11 10 9
13 13 N 1.34777 * 119.99928 * 179.72354 * 11 10 9
14 14 C 1.46499 * 120.00199 * 180.27479 * 13 11 10
15 15 C 1.50694 * 109.47550 * 180.02562 * 14 13 11
16 16 C 1.38278 * 119.94336 * 269.72827 * 15 14 13
17 17 C 1.38151 * 120.07525 * 179.76416 * 16 15 14
18 18 C 1.38725 * 119.94843 * 0.48718 * 17 16 15
19 19 O 1.35916 * 120.05482 * 179.74877 * 18 17 16
20 20 C 1.38787 * 119.88554 * 359.76598 * 18 17 16
21 21 Br 1.89093 * 120.03664 * 179.97438 * 20 18 17
22 22 C 1.38244 * 119.92732 * 359.97438 * 20 18 17
23 23 H 0.97002 * 120.00288 * 359.97438 * 1 2 3
24 24 H 1.09004 * 109.47193 * 60.00140 * 10 9 7
25 25 H 1.08994 * 109.47534 * 299.99814 * 10 9 7
26 26 H 0.97000 * 120.00317 * 0.28382 * 13 11 10
27 27 H 1.08998 * 109.47134 * 300.00670 * 14 13 11
28 28 H 1.09002 * 109.46857 * 59.99862 * 14 13 11
29 29 H 1.08000 * 119.96080 * 0.02562 * 16 15 14
30 30 H 1.07997 * 120.02595 * 180.23441 * 17 16 15
31 31 H 0.96703 * 113.99374 * 270.02082 * 19 18 17
32 32 H 1.07995 * 119.97760 * 179.97438 * 22 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2503 1.6178 0.0000
4 1 3.7103 1.3465 -0.0006
5 1 1.8915 2.3966 -1.2124
6 1 1.8916 2.3964 1.2126
7 6 2.0103 -1.2020 -0.0005
8 1 3.0903 -1.2019 -0.0010
9 16 1.1293 -2.7280 -0.0005
10 6 2.5159 -3.8913 -0.0021
11 6 1.9875 -5.3026 -0.0017
12 8 0.7912 -5.5023 -0.0009
13 7 2.8442 -6.3430 -0.0084
14 6 2.3306 -7.7150 -0.0141
15 6 3.4849 -8.6836 -0.0203
16 6 4.0082 -9.1260 -1.2213
17 6 5.0696 -10.0103 -1.2302
18 6 5.6043 -10.4626 -0.0327
19 8 6.6452 -11.3365 -0.0390
20 6 5.0742 -10.0214 1.1717
21 35 5.7992 -10.6357 2.8065
22 6 4.0156 -9.1324 1.1748
23 1 -0.4851 0.8400 0.0004
24 1 3.1252 -3.7316 0.8875
25 1 3.1238 -3.7309 -0.8925
26 1 3.8010 -6.1834 -0.0093
27 1 1.7235 -7.8794 0.8762
28 1 1.7203 -7.8707 -0.9037
29 1 3.5894 -8.7766 -2.1535
30 1 5.4802 -10.3524 -2.1687
31 1 6.3783 -12.2659 -0.0430
32 1 3.6022 -8.7888 2.1115
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000156517884.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:58:34
Heat of formation + Delta-G solvation = -80.154896 kcal
Electronic energy + Delta-G solvation = -18256.529098 eV
Core-core repulsion = 14967.618320 eV
Total energy + Delta-G solvation = -3288.910778 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 344.982 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-41.15207 -40.38524 -38.13547 -35.66331 -34.57689 -33.38708 -32.23850 -30.71474
-29.99033 -27.69956 -26.48457 -23.81151 -22.51530 -21.80666 -19.87488 -19.50967
-17.97582 -17.53426 -17.33244 -16.87564 -16.59936 -16.40343 -15.97154 -15.75019
-14.98249 -14.64085 -14.60959 -14.45728 -14.30498 -13.59069 -13.39920 -13.15232
-12.92466 -12.86944 -12.79753 -12.56463 -11.92574 -11.70479 -11.63614 -11.26976
-11.15251 -11.03009 -10.26722 -10.16421 -9.95426 -9.64859 -8.65532 -8.34322
-6.11898 -0.14101 0.06723 0.57802 1.28514 1.41943 1.48209 1.59268
1.61221 2.15103 2.27887 2.60364 2.99990 3.08056 3.33616 3.49858
3.74327 3.99613 4.08360 4.15406 4.30179 4.34182 4.52961 4.60566
4.69694 4.81405 4.94341 5.12603 5.35847 5.37297 5.43076 5.59280
6.20781 6.47075 6.67826 7.07399 7.21921 8.75086
Molecular weight = 344.98amu
Principal moments of inertia in cm(-1)
A = 0.021778 B = 0.002072 C = 0.002011
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1285.394938 B =13508.677550 C =13920.679615
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.911 5.911
2 C 0.013 3.987
3 Si 0.999 3.001
4 H -0.257 1.257
5 H -0.274 1.274
6 H -0.274 1.274
7 C -0.545 4.545
8 H 0.082 0.918
9 S -0.150 6.150
10 C -0.131 4.131
11 C 0.536 3.464
12 O -0.562 6.562
13 N -0.710 5.710
14 C 0.165 3.835
15 C -0.109 4.109
16 C -0.063 4.063
17 C -0.138 4.138
18 C 0.141 3.859
19 O -0.496 6.496
20 C -0.137 4.137
21 Br -0.042 7.042
22 C -0.061 4.061
23 H 0.271 0.729
24 H 0.108 0.892
25 H 0.111 0.889
26 H 0.414 0.586
27 H 0.072 0.928
28 H 0.081 0.919
29 H 0.154 0.846
30 H 0.162 0.838
31 H 0.413 0.587
32 H 0.139 0.861
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 16.154 -27.559 0.570 31.949
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.548 5.548
2 C -0.192 4.192
3 Si 0.820 3.180
4 H -0.181 1.181
5 H -0.199 1.199
6 H -0.200 1.200
7 C -0.693 4.693
8 H 0.100 0.900
9 S 0.077 5.923
10 C -0.282 4.282
11 C 0.322 3.678
12 O -0.440 6.440
13 N -0.364 5.364
14 C 0.042 3.958
15 C -0.111 4.111
16 C -0.081 4.081
17 C -0.157 4.157
18 C 0.093 3.907
19 O -0.309 6.309
20 C -0.217 4.217
21 Br 0.043 6.957
22 C -0.082 4.082
23 H 0.080 0.920
24 H 0.126 0.874
25 H 0.129 0.871
26 H 0.251 0.749
27 H 0.090 0.910
28 H 0.099 0.901
29 H 0.172 0.828
30 H 0.179 0.821
31 H 0.274 0.726
32 H 0.157 0.843
Dipole moment (debyes) X Y Z Total
from point charges 14.636 -27.573 1.196 31.240
hybrid contribution 1.425 0.984 -0.142 1.738
sum 16.061 -26.589 1.054 31.082
Atomic orbital electron populations
1.70187 1.07937 1.28539 1.48114 1.26122 0.95972 1.03308 0.93794
0.84906 0.78601 0.76384 0.78060 1.18080 1.19920 1.19988 1.23233
0.95329 0.92036 1.58678 0.89971 1.85552 1.10483 0.99183 1.97041
1.23382 1.03588 0.94396 1.06824 1.20018 0.86165 0.86510 0.75067
1.90702 1.17255 1.86014 1.50077 1.45826 1.10288 1.04635 1.75697
1.20163 0.93532 0.78619 1.03500 1.19725 0.98393 0.99650 0.93312
1.21389 0.94200 0.94199 0.98348 1.21642 0.96482 0.99432 0.98103
1.18357 0.87675 0.93771 0.90876 1.84798 1.29400 1.20640 1.96102
1.22425 1.01346 1.05834 0.92075 1.96740 1.84827 1.88016 1.26114
1.21070 0.93504 0.94335 0.99244 0.91997 0.87354 0.87122 0.74908
0.90994 0.90085 0.82837 0.82069 0.72630 0.84306
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -55.78 13.22 21.65 0.29 -55.49 16
2 C 0.01 0.72 5.49 84.86 0.47 1.19 16
3 Si 1.00 43.48 29.55 68.60 2.03 45.51 16
4 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16
5 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16
6 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16
7 C -0.54 -30.94 9.50 67.95 0.65 -30.29 16
8 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16
9 S -0.15 -8.23 20.57 -56.49 -1.16 -9.39 16
10 C -0.13 -5.06 6.16 71.24 0.44 -4.62 16
11 C 0.54 18.95 7.85 87.66 0.69 19.64 16
12 O -0.56 -25.08 15.86 -3.04 -0.05 -25.13 16
13 N -0.71 -16.78 5.55 -466.79 -2.59 -19.37 16
14 C 0.16 3.29 5.80 85.63 0.50 3.79 16
15 C -0.11 -1.66 5.25 -19.85 -0.10 -1.76 16
16 C -0.06 -0.75 9.69 22.26 0.22 -0.54 16
17 C -0.14 -1.52 9.99 22.37 0.22 -1.30 16
18 C 0.14 1.92 6.69 22.52 0.15 2.07 16
19 O -0.50 -5.78 12.84 -92.60 -1.19 -6.97 16
20 C -0.14 -2.18 6.24 22.40 0.14 -2.04 16
21 Br -0.04 -0.69 33.16 -20.37 -0.68 -1.36 16
22 C -0.06 -0.98 9.44 22.27 0.21 -0.77 16
23 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16
24 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16
25 H 0.11 3.83 8.14 -2.40 -0.02 3.81 16
26 H 0.41 7.54 8.46 -92.71 -0.78 6.75 16
27 H 0.07 1.57 8.08 -2.39 -0.02 1.55 16
28 H 0.08 1.65 8.08 -2.39 -0.02 1.63 16
29 H 0.15 1.37 8.06 -2.91 -0.02 1.35 16
30 H 0.16 1.08 8.06 -2.91 -0.02 1.06 16
31 H 0.41 1.20 9.06 -74.05 -0.67 0.53 16
32 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16
Total: -1.00 -76.78 324.43 -0.06 -76.84
By element:
Atomic # 1 Polarization: 10.28 SS G_CDS: -0.28 Total: 10.00 kcal
Atomic # 6 Polarization: -18.20 SS G_CDS: 3.57 Total: -14.63 kcal
Atomic # 7 Polarization: -72.56 SS G_CDS: -2.30 Total: -74.86 kcal
Atomic # 8 Polarization: -30.86 SS G_CDS: -1.24 Total: -32.10 kcal
Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal
Atomic # 16 Polarization: -8.23 SS G_CDS: -1.16 Total: -9.39 kcal
Atomic # 35 Polarization: -0.69 SS G_CDS: -0.68 Total: -1.36 kcal
Total: -76.78 -0.06 -76.84 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000156517884.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -3.317 kcal
(2) G-P(sol) polarization free energy of solvation -76.781 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.097 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.058 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.838 kcal
(6) G-S(sol) free energy of system = (1) + (5) -80.155 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds